Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

21982989 .. 21984598

Gene Structure 1610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTGCATCTAACGGCGAGAAAAGCTTGATCGTGAGCTTCGGTGAAATGCTCATCGATTTCGTCCCAACCGTCTCCGGTGTATCCCTCGCCGATGCTCCTGGCTTCATCAAAGCCCCCGGTGGTGCACCTGCCAACGTTGCCATCGCCATTTCCCGTCTAGGCGGTCGTGCCGCTTTCGTTGGAAAACTCGGTGACGACGAGTTCGGTCACATGCTCGCCGGAATCTTGAAACAGAACGGTGTCTCTGCTGAAGGTATCAATTTCGACACTGGAGCCAGGACTGCACTTGCGTTCGTGACACTAAGATCTGATGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTGCTAAGGTGTTCCACTACGGATCCATAAGCTTGATCGTTGAGCCATGTCGATCTGCTCACTTGAAAGCCATGGAGGTGGCTAAGGAAGCTGGTGCGTTGCTTTCATATGATCCGAACTTGAGGCTTCCTTTGTGGCCCTCGAAGGAGGAGGCTCAGAAGCAGATTCTTAGCATCTGGGACAAAGCTGAAGTGATCAAAGTCAGCGATGAAGAGCTTATGTTCTTGACTGGATCTGATAAGGTTGATGATGAGACTGCTTTGTCTCTGTGGCACTCTAATCTGAAACTTCTCTTGGTCACTCTAGGTGAAAAGGGTTGTAGATACTACACCAAGAGCTTCCGTGGATCTGTTGATCCCTTCCATGTGGATGCAGTAGATACAACTGGTGCTGGTGATTCATTTGTTGGTGCATTGCTTTGCAAGATTGTTGATGACCGTGCTGTGCTTGAGGACGAAGCTCGGCTGAGAGAAGTGCTTAGGCTTGCGAATGCTTGTGGAGCCATCACAACAACAAAGAAAGGAGCTATTCCAGCTCTCCCTACAGAGTCTGAAGTTCAGAGCCTCCTGAAAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

326

Amino Acids

35.04

Weight (kDa)

5.21

Isoelectric Point (pI)

24.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	9 - 315	4.5e-73	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	139
AasI	GACNNNNNNGTC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	139
AciI	CCGC	2 cut(s)	165, 174
AclI	AACGTT	1 cut(s)	138
AclWI	GGATC	6 cut(s)	417, 430, 506, 640, 749, 754
AcuI	CTGAAG	3 cut(s)	273, 609, 972
AgsI	TTSAA	2 cut(s)	232, 466
AjnI	CCWGG	2 cut(s)	100, 278
AjuI	GAANNNNNNNTTGG	2 cut(s)	677, 709
Alw21I	GWGCWC	2 cut(s)	130, 381
Alw26I	GTCTC	4 cut(s)	79, 250, 647, 669
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	6 cut(s)	417, 430, 506, 640, 749, 754
AlwNI	CAGNNNCTG	1 cut(s)	950
AoxI	GGCC	1 cut(s)	536
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspS9I	GGNCC	1 cut(s)	537
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	4 cut(s)	56, 206, 719, 806
BaeGI	GKGCMC	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	2 cut(s)	130, 381
BccI	CCATC	3 cut(s)	152, 308, 911
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	102, 280
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	4 cut(s)	79, 250, 647, 669
BfaI	CTAG	3 cut(s)	161, 348, 704
BfmI	CTRYAG	1 cut(s)	942
BfuAI	ACCTGC	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	94
BglII	AGATCT	2 cut(s)	308, 398
BisI	GCNGC	2 cut(s)	6, 174
BlsI	GCNGC	2 cut(s)	7, 175
Bme1390I	CCNGG	3 cut(s)	102, 120, 280
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	4 cut(s)	277, 344, 424, 901
BmrFI	CCNGG	3 cut(s)	102, 120, 280
BmsI	GCATC	4 cut(s)	17, 85, 582, 760
BpmI	CTGGAG	1 cut(s)	294
Bpu10I	CCTNAGC	3 cut(s)	405, 483, 878
BpuEI	CTTGAG	2 cut(s)	541, 869
BpuMI	CCSGG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	118, 471, 742
BsaWI	WCCGGW	2 cut(s)	77, 339
Bse1I	ACTGG	3 cut(s)	277, 634, 790
Bse3DI	GCAATG	1 cut(s)	812
BseBI	CCWGG	2 cut(s)	102, 280
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	118, 471, 742
BseGI	GGATG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	2 cut(s)	569, 857
BseNI	ACTGG	3 cut(s)	277, 634, 790
BseRI	GAGGAG	2 cut(s)	353, 563
BseSI	GKGCMC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	538
BshVI	ATCGAT	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	130, 381
BsiSI	CCGG	4 cut(s)	78, 120, 222, 340
BslFI	GGGAC	3 cut(s)	50, 354, 593
BsmAI	GTCTC	4 cut(s)	79, 250, 647, 669
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	3 cut(s)	50, 354, 593
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	130, 381
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	2 cut(s)	165, 174
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	2 cut(s)	568, 858
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	277, 344, 424, 901
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	6 cut(s)	417, 430, 506, 640, 749, 754
BspQI	GCTCTTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	812
BsrI	ACTGG	3 cut(s)	277, 634, 790
BssECI	CCNNGG	3 cut(s)	118, 471, 742
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	102, 280
Bst4CI	ACNGT	3 cut(s)	73, 242, 839
Bst6I	CTCTTC	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	219, 885
BstDEI	CTNAG	7 cut(s)	305, 405, 483, 555, 569, 866, 878
BstDSI	CCRYGG	2 cut(s)	471, 742
BstF5I	GGATG	1 cut(s)	775
BstMAI	GTCTC	4 cut(s)	79, 250, 647, 669
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 140, 284, 488, 899, 932
BstNI	CCWGG	2 cut(s)	102, 280
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	100, 118, 278
BstSFI	CTRYAG	1 cut(s)	942
BstSLI	GKGCMC	1 cut(s)	130
BstX2I	RGATCY	5 cut(s)	308, 398, 422, 632, 746
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	5 cut(s)	308, 398, 422, 632, 746
Bsu15I	ATCGAT	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	538
BsuTUI	ATCGAT	1 cut(s)	57
BtgI	CCRYGG	2 cut(s)	471, 742
BtgZI	GCGATG	2 cut(s)	130, 621
BtsCI	GGATG	1 cut(s)	775
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	219, 885
CaiI	CAGNNNCTG	1 cut(s)	950
Cfr13I	GGNCC	1 cut(s)	537
ClaI	ATCGAT	1 cut(s)	57
CviAII	CATG	5 cut(s)	214, 331, 447, 472, 764
DdeI	CTNAG	7 cut(s)	305, 405, 483, 555, 569, 866, 878
DrdI	GACNNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	3 cut(s)	273, 609, 972
EcoICRI	GAGCTC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	100, 278
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	5 cut(s)	217, 334, 450, 475, 767
FaqI	GGGAC	3 cut(s)	50, 354, 593
FatI	CATG	5 cut(s)	213, 330, 446, 471, 763
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	2 cut(s)	6, 174
FokI	GGATG	1 cut(s)	782
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	6, 174
FspBI	CTAG	3 cut(s)	161, 348, 704
GluI	GCNGC	2 cut(s)	6, 174
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	4 cut(s)	78, 120, 222, 340
Hin1II	CATG	5 cut(s)	217, 334, 450, 475, 767
HindIII	AAGCTT	2 cut(s)	25, 430
HinfI	GANTC	4 cut(s)	225, 565, 797, 947
HpaII	CCGG	4 cut(s)	78, 120, 222, 340
HphI	GGTGA	4 cut(s)	56, 206, 719, 806
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	8 cut(s)	313, 398, 516, 558, 637, 684, 952, 960
Hpy188III	TCNNGA	7 cut(s)	34, 229, 298, 371, 386, 625, 967
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	2 cut(s)	203, 377
HpyAV	CCTTC	3 cut(s)	248, 538, 769
HpyCH4III	ACNGT	3 cut(s)	73, 242, 839
HpyCH4IV	ACGT	2 cut(s)	138, 322
HpyCH4V	TGCA	6 cut(s)	8, 128, 287, 773, 812, 822
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 140, 284, 488, 899, 932
HpyF3I	CTNAG	7 cut(s)	305, 405, 483, 555, 569, 866, 878
HpySE526I	ACGT	2 cut(s)	138, 322
Hsp92II	CATG	5 cut(s)	217, 334, 450, 475, 767
Ksp22I	TGATCA	1 cut(s)	594
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	5 cut(s)	103, 275, 366, 899, 923
LweI	GCATC	4 cut(s)	17, 85, 582, 760
MaeI	CTAG	3 cut(s)	161, 348, 704
MaeII	ACGT	2 cut(s)	138, 322
MaeIII	GTNAC	4 cut(s)	194, 209, 298, 697
MboII	GAAGA	1 cut(s)	623
MflI	RGATCY	5 cut(s)	308, 398, 422, 632, 746
MhlI	GDGCHC	2 cut(s)	130, 381
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	956
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	9 cut(s)	98, 374, 469, 516, 541, 544, 550, 844, 974
MslI	CAYNNNNRTG	2 cut(s)	476, 768
MspI	CCGG	4 cut(s)	78, 120, 222, 340
MspR9I	CCNGG	3 cut(s)	102, 120, 280
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	2 cut(s)	102, 280
MwoI	GCNNNNNNNGC	6 cut(s)	24, 140, 284, 488, 899, 932
NciI	CCSGG	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	471
NdeI	CATATG	1 cut(s)	508
NlaIII	CATG	5 cut(s)	217, 334, 450, 475, 767
NlaIV	GGNNCC	4 cut(s)	277, 344, 424, 901
NmeAIII	GCCGAG	1 cut(s)	841
NmuCI	GTSAC	4 cut(s)	194, 209, 298, 697
NspI	RCATGY	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 198
PctI	GAATGC	1 cut(s)	895
PfeI	GAWTC	3 cut(s)	225, 565, 797
PkrI	GCNGC	2 cut(s)	7, 175
PleI	GAGTC	1 cut(s)	955
PpsI	GAGTC	1 cut(s)	955
Psp124BI	GAGCTC	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	100, 278
PspGI	CCWGG	2 cut(s)	100, 278
PspN4I	GGNNCC	4 cut(s)	277, 344, 424, 901
PspPI	GGNCC	1 cut(s)	537
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	5 cut(s)	308, 398, 422, 632, 746
RseI	CAYNNNNRTG	2 cut(s)	476, 768
SacI	GAGCTC	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	606
SatI	GCNGC	2 cut(s)	6, 174
Sau96I	GGNCC	1 cut(s)	537
SchI	GAGTC	1 cut(s)	956
ScrFI	CCNGG	3 cut(s)	102, 120, 280
SduI	GDGCHC	2 cut(s)	130, 381
SfaNI	GCATC	4 cut(s)	17, 85, 582, 760
SfcI	CTRYAG	1 cut(s)	942
SmiMI	CAYNNNNRTG	2 cut(s)	476, 768
SmlI	CTYRAG	2 cut(s)	520, 848
SmoI	CTYRAG	2 cut(s)	520, 848
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	2 cut(s)	165, 174
SspMI	CTAG	3 cut(s)	161, 348, 704
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	3 cut(s)	100, 118, 278
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	73, 242, 839
TaiI	ACGT	2 cut(s)	141, 325
TaqI	TCGA	4 cut(s)	57, 267, 451, 542
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	1 cut(s)	262
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	3 cut(s)	225, 565, 797
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	4 cut(s)	194, 209, 298, 697
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	4 cut(s)	194, 209, 298, 697
TspDTI	ATGAA	5 cut(s)	97, 319, 495, 624, 789
TspGWI	ACGGA	3 cut(s)	356, 435, 731
TspRI	CASTG	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	126
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	3 cut(s)	161, 348, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.