Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000261.1

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

61030 .. 63362

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000261.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgccggtgccttactttcctacgacccgaacctccgactaccattgtgggccttcacctgagaaggcacgcgaacaaataataagtatatgggaaaaggcaggagtgattaagatcctccttgtcactcttggtgaaaagggttgcagatactacactaagaatttccgtggatgtgtggaagcttttcatgtaactgcggtagatacaactggtgctggtgattcatttgtgggtgctctgctcgcaaagattgttaatgaccaatctgttcttgatgatgagcaaaggttaagggaagtactcaaattcgcaaatgcatgtggagcaataacaactactaagaagagagcaattcctgcactccccacagagtccgaactccgaagtcctcgccctaatcaaagaggcataatcaatcttttagtttttactgcaaatgctgaccttgcgaaatcactagccactgtgcagtggaatctcaagccagaggtcaatcatgtagcagaacttcgacagcaagttgagttaaaagaagttaaccatgaagaactcaggaggaagatctctgatactcatcagatcgaaatatttttatacagtgatacatcggctttggaaggtagaaatggaatagacatacagggaataccatgggagaggcttaatttcaccagagataagtaccgtgaagcgcgattgaagcaatataagaactgtgagagcctcgtaactcttgtgaatgttactggagtgcttgcaagtggagaaggtgaagagtttctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

262

Amino Acids

29.43

Weight (kDa)

6.97

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	2 cut(s)	72, 697
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	163, 308
AfaI	GTAC	2 cut(s)	303, 686
AgsI	TTSAA	1 cut(s)	703
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	163, 308
Asp700I	GAANNNNTTC	2 cut(s)	186, 780
AspLEI	GCGC	1 cut(s)	697
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	5 cut(s)	48, 146, 233, 664, 785
BanI	GGYRCC	1 cut(s)	7
BarI	GAAGNNNNNNTAC	2 cut(s)	495, 527
Bbv12I	GWGCWC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	461
BglII	AGATCT	1 cut(s)	564
BmcAI	AGTACT	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	467
BsaBI	GATNNNNATC	2 cut(s)	113, 576
BsaJI	CCNNGG	2 cut(s)	169, 653
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	217, 754
Bse8I	GATNNNNATC	2 cut(s)	113, 576
BseDI	CCNNGG	2 cut(s)	169, 653
BseGI	GGATG	1 cut(s)	179
BseJI	GATNNNNATC	2 cut(s)	113, 576
BseMII	CTCAG	2 cut(s)	51, 568
BseNI	ACTGG	2 cut(s)	217, 754
BsgI	GTGCAG	2 cut(s)	345, 491
Bsh1236I	CGCG	2 cut(s)	72, 697
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	5
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	114, 564, 582
Bsp19I	CCATGG	1 cut(s)	653
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	2 cut(s)	52, 567
BspFNI	CGCG	2 cut(s)	72, 697
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	217, 754
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	169, 653
BssMI	GATC	3 cut(s)	114, 564, 582
BssT1I	CCWWGG	1 cut(s)	653
Bst4CI	ACNGT	4 cut(s)	469, 602, 689, 719
Bst6I	CTCTTC	2 cut(s)	341, 771
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	3 cut(s)	70, 246, 759
BstDEI	CTNAG	4 cut(s)	60, 159, 342, 554
BstDSI	CCRYGG	2 cut(s)	169, 653
BstF5I	GGATG	1 cut(s)	179
BstFNI	CGCG	2 cut(s)	72, 697
BstHHI	GCGC	1 cut(s)	697
BstKTI	GATC	3 cut(s)	117, 567, 585
BstMBI	GATC	3 cut(s)	114, 564, 582
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 326, 359, 449, 703
BstNSI	RCATGY	1 cut(s)	324
BstUI	CGCG	2 cut(s)	72, 697
BstX2I	RGATCY	2 cut(s)	114, 564
BstYI	RGATCY	2 cut(s)	114, 564
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	2 cut(s)	169, 653
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	3 cut(s)	465, 479, 607
Cac8I	GCNNGC	3 cut(s)	70, 246, 759
CfoI	GCGC	1 cut(s)	697
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	302, 685
CviAII	CATG	5 cut(s)	191, 321, 500, 545, 654
CviJI	RGCY	7 cut(s)	52, 185, 464, 487, 614, 664, 726
CviKI_1	RGCY	7 cut(s)	52, 185, 464, 487, 614, 664, 726
CviQI	GTAC	2 cut(s)	302, 685
DdeI	CTNAG	4 cut(s)	60, 159, 342, 554
DpnI	GATC	3 cut(s)	116, 566, 584
DpnII	GATC	3 cut(s)	114, 564, 582
Eam1104I	CTCTTC	2 cut(s)	341, 771
EarI	CTCTTC	2 cut(s)	341, 771
Eco130I	CCWWGG	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	5 cut(s)	194, 324, 503, 548, 657
FatI	CATG	5 cut(s)	190, 320, 499, 544, 653
FokI	GGATG	1 cut(s)	186
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	697
Hin1II	CATG	5 cut(s)	194, 324, 503, 548, 657
Hin6I	GCGC	1 cut(s)	695
HinP1I	GCGC	1 cut(s)	695
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	3 cut(s)	224, 374, 478
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	5 cut(s)	48, 146, 233, 664, 785
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	5 cut(s)	37, 379, 386, 571, 582
Hpy188III	TCNNGA	2 cut(s)	275, 556
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	4 cut(s)	58, 63, 614, 764
HpyCH4III	ACNGT	4 cut(s)	469, 602, 689, 719
HpyCH4V	TGCA	6 cut(s)	147, 320, 362, 437, 472, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 326, 359, 449, 703
HpyF3I	CTNAG	4 cut(s)	60, 159, 342, 554
Hsp92II	CATG	5 cut(s)	194, 324, 503, 548, 657
HspAI	GCGC	1 cut(s)	695
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	114, 564, 582
LmnI	GCTCC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	461
MaeIII	GTNAC	4 cut(s)	124, 193, 730, 745
MalI	GATC	3 cut(s)	116, 566, 584
MboI	GATC	3 cut(s)	114, 564, 582
MboII	GAAGA	4 cut(s)	358, 560, 574, 788
MflI	RGATCY	2 cut(s)	114, 564
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	4 cut(s)	163, 308, 354, 667
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	43, 128, 401, 402, 484, 552, 654, 737
Mph1103I	ATGCAT	1 cut(s)	322
MroXI	GAANNNNTTC	2 cut(s)	186, 780
MseI	TTAA	6 cut(s)	111, 258, 293, 530, 540, 666
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	2 cut(s)	72, 697
MwoI	GCNNNNNNNGC	5 cut(s)	245, 326, 359, 449, 703
NcoI	CCATGG	1 cut(s)	653
NdeII	GATC	3 cut(s)	114, 564, 582
NlaIII	CATG	5 cut(s)	194, 324, 503, 548, 657
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	324
PdmI	GAANNNNTTC	2 cut(s)	186, 780
PfeI	GAWTC	2 cut(s)	224, 478
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	114, 564
RsaI	GTAC	2 cut(s)	303, 686
RsaNI	GTAC	2 cut(s)	302, 685
SaqAI	TTAA	6 cut(s)	111, 258, 293, 530, 540, 666
Sau3AI	GATC	3 cut(s)	114, 564, 582
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	8 cut(s)	35, 61, 187, 293, 450, 495, 625, 775
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	163, 308, 354, 667
SsiI	CCGC	1 cut(s)	200
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	4 cut(s)	469, 602, 689, 719
TaqI	TCGA	2 cut(s)	514, 585
TasI	AATT	4 cut(s)	163, 308, 354, 667
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	224, 478
Tru1I	TTAA	6 cut(s)	111, 258, 293, 530, 540, 666
Tru9I	TTAA	6 cut(s)	111, 258, 293, 530, 540, 666
TscAI	CASTG	3 cut(s)	472, 479, 607
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	179, 216, 561
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	3 cut(s)	472, 479, 607
XapI	RAATTY	2 cut(s)	163, 308
XceI	RCATGY	1 cut(s)	324
XmnI	GAANNNNTTC	2 cut(s)	186, 780
XspI	CTAG	1 cut(s)	461
ZrmI	AGTACT	1 cut(s)	303
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.