Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

12669481 .. 12670181

Gene Structure 701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17406

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCCGGTGCCTTACTTTCCTACGACCCGAACCTCCGACTACCATTGTGGGCCTTCACCTGAGAAGGCACGCGAACAAATAATAAGTATATGGGAAAAGGCTGGAGTGATTAAGGTCAGTGATGTGGAACTTGAGTTTCTCACAGGAAATCCCAACATTGACGATGAATCTGCGATGACTCTATACTACACTAAGAATTTCCGTGGATGTGTGGAAGCTTTTCATGTAACTGCGGTAGATACAACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGCTCGCAAAGATTGTTAATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGAAGTACTCAAATTCGCAAATGCATGTGGAGCAATAACAACTACTAAGAAGAGAGCAATTCCTGCACTCCCCACAGAGTCCGAACTCCGAAGTCCTCGCCCTAATCAAAGAGGCATAATCAATCTTTTAGTTTTTGTTTTTTGTAATAGCATAGATTCTTTTTGCAGTTCATCCATCTTTCTAGGACTTCTGCATGTGTTTTTAAACTTCATTGCTTTTGATTTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

186

Amino Acids

20.63

Weight (kDa)

5.39

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	60 - 135	6.6e-17	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	196, 341
AfaI	GTAC	1 cut(s)	336
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	196, 341
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	48, 266
BanI	GGYRCC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	274
BccI	CCATC	1 cut(s)	512
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BfaI	CTAG	1 cut(s)	512
BmcAI	AGTACT	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	2 cut(s)	212, 500
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	5
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	70, 279
BstDEI	CTNAG	3 cut(s)	60, 192, 375
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	212, 500
BstFNI	CGCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 359, 392
BstNSI	RCATGY	2 cut(s)	357, 527
BstUI	CGCG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	212, 500
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	70, 279
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	3 cut(s)	224, 354, 524
CviJI	RGCY	3 cut(s)	52, 101, 218
CviKI_1	RGCY	3 cut(s)	52, 101, 218
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	3 cut(s)	60, 192, 375
DraI	TTTAAA	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	355
FaeI	CATG	3 cut(s)	227, 357, 527
FaiI	YATR	8 cut(s)	89, 91, 184, 225, 355, 446, 482, 525
FatI	CATG	3 cut(s)	223, 353, 523
FokI	GGATG	2 cut(s)	219, 487
FspBI	CTAG	1 cut(s)	512
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	3 cut(s)	227, 357, 527
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	5 cut(s)	167, 178, 257, 407, 485
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	48, 266
Hpy188I	TCNGA	3 cut(s)	37, 412, 419
Hpy188III	TCNNGA	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	58, 63
HpyCH4V	TGCA	4 cut(s)	353, 395, 495, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 359, 392
HpyF3I	CTNAG	3 cut(s)	60, 192, 375
Hsp92II	CATG	3 cut(s)	227, 357, 527
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	7 cut(s)	18, 72, 87, 129, 231, 237, 405
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	3 cut(s)	196, 341, 387
MlyI	GAGTC	2 cut(s)	172, 416
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	4 cut(s)	43, 321, 434, 435
Mph1103I	ATGCAT	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	3 cut(s)	111, 291, 533
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	278, 359, 392
NlaIII	CATG	3 cut(s)	227, 357, 527
NlaIV	GGNNCC	1 cut(s)	9
NsiI	ATGCAT	1 cut(s)	355
NspI	RCATGY	2 cut(s)	357, 527
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	167, 257, 485
PleI	GAGTC	2 cut(s)	172, 415
PpsI	GAGTC	2 cut(s)	172, 415
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	111, 291, 533
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	2 cut(s)	172, 416
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	5 cut(s)	35, 61, 117, 220, 326
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	196, 341, 387
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	512
TasI	AATT	3 cut(s)	196, 341, 387
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	3 cut(s)	167, 257, 485
Tru1I	TTAA	3 cut(s)	111, 291, 533
Tru9I	TTAA	3 cut(s)	111, 291, 533
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	180, 212, 249, 489, 529
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	196, 341
XceI	RCATGY	2 cut(s)	357, 527
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	512
ZrmI	AGTACT	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.