Rmu_ssc0000261.1_g000019

Belongs to the carbohydrate kinase PfkB family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000261.1
Physical Location & Seq
Reverse (-)
144853 .. 145824
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000261.1_g000019.1.cds

Sequence Viewer

Length: 972 bp
atggctaatgagaagggtctgatcgtgagtttcggggagatgctgatcgacttcgtccccaccgtttcgggcgtttcactggccgaagccccagctttcttgaaggcccccggtggcgcccccgccaacgtggcgatcgctgtggctcggctcggtggcaactcctccttcatcgggaagctcggcgacgacgagttcgggcacatgctctccggaatcttgaaagagaacggtgtctccgggcagggcatcctgttcgaccaaaatgcacgcaccgctctggcattcgtgaccctacgcgccgacggagagcgcgagttcatgttctaccgaaaccctagcgccgatatgctgctcaagcccgaagagctcgatttagagctgatcagatccgctaaagtgttccattatggatcaataagcttgatcgttgaaccatgcaggtcggcacatctgaaggcaatggaggtcgcaaaagatgccggtgccttactttcctacgacccgaacctccgactaccattgtggccttcacctgaggaggcacgcgaacaaataatgagtatatgggaaaaggcagaagtgatcaaggtcagtgatgtagagcttgagtttctcacaggaaatcccaacattgacgatgaatctgcgatgactctgtggcatcctaacttgaagctccttcttgtcactcttggtgaaaagggttgcagatactacactaagaatttccgtggatgtgtggaagcttttcatgtaactgcggtagatactactggtgctggtgattcatttgtgggtgctctgctcgcaaagattgttgatgaccaatatgttcttgatgatgagcaaaggttgagggaagtactcaaattcgcaaatgcatgtggagcaataacaactactaagaagggagcaattcctgcacttcccacagagttcgaagtcctcgccctaatcaaagaggcatag

Protein Analysis

323

Amino Acids

35.06

Weight (kDa)

4.9

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AccB1I GGYRCC 2 cut(s) 116, 485
AccBSI CCGCTC 1 cut(s) 278
AccII CGCG 3 cut(s) 300, 315, 549
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 4 cut(s) 123, 276, 393, 764
AclWI GGATC 2 cut(s) 384, 421
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 2 cut(s) 727, 872
AcuI CTGAAG 1 cut(s) 476
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 867
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 4 cut(s) 103, 223, 434, 676
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 8 cut(s) 95, 181, 370, 382, 423, 607, 679, 749
AluI AGCT 8 cut(s) 95, 181, 370, 382, 423, 607, 679, 749
Alw21I GWGCWC 2 cut(s) 372, 805
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 2 cut(s) 384, 421
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 3 cut(s) 81, 105, 527
ApeKI GCWGC 1 cut(s) 352
ApoI RAATTY 2 cut(s) 727, 872
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AsiSI GCGATCGC 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 750
AspLEI GCGC 4 cut(s) 119, 302, 315, 344
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 2 cut(s) 111, 241
AsuHPI GGTGA 3 cut(s) 525, 710, 797
AsuII TTCGAA 1 cut(s) 942
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 2 cut(s) 116, 485
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 372, 805
BbvI GCAGC 1 cut(s) 339
BcgI CGANNNNNNTGC 6 cut(s) 238, 248, 272, 282, 629, 663
BclI TGATCA 2 cut(s) 384, 585
BcnI CCSGG 2 cut(s) 111, 241
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 339
BfoI RGCGCY 2 cut(s) 120, 345
BfuAI ACCTGC 1 cut(s) 432
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 354
BmcAI AGTACT 1 cut(s) 867
Bme1390I CCNGG 2 cut(s) 111, 241
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 108, 118, 487
BmrFI CCNGG 2 cut(s) 111, 241
BmsI GCATC 4 cut(s) 30, 258, 469, 673
Bpu14I TTCGAA 1 cut(s) 942
BpuEI CTTGAG 2 cut(s) 341, 629
BpuMI CCSGG 2 cut(s) 111, 241
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 109, 733
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 4 cut(s) 194, 221, 224, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 84, 781
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 109, 733
BseGI GGATG 3 cut(s) 249, 664, 743
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 2 cut(s) 84, 781
BseRI GAGGAG 2 cut(s) 154, 554
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 339
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 3 cut(s) 300, 315, 549
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 83, 107, 529
BshNI GGYRCC 2 cut(s) 116, 485
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 372, 805
BsiSI CCGG 4 cut(s) 111, 213, 240, 483
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 3 cut(s) 83, 107, 529
Bsp119I TTCGAA 1 cut(s) 942
Bsp1286I GDGCHC 3 cut(s) 204, 372, 805
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 8 cut(s) 21, 45, 135, 384, 389, 413, 426, 585
BspACI CCGC 4 cut(s) 123, 276, 393, 764
BspANI GGCC 3 cut(s) 83, 107, 529
BspCNI CTCAG 1 cut(s) 529
BspEI TCCGGA 1 cut(s) 212
BspFNI CGCG 3 cut(s) 300, 315, 549
BspLI GGNNCC 3 cut(s) 108, 118, 487
BspMI ACCTGC 1 cut(s) 432
BspPI GGATC 2 cut(s) 384, 421
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 942
BspT107I GGYRCC 2 cut(s) 116, 485
BsrBI CCGCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 2 cut(s) 84, 781
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 109, 733
BssMI GATC 8 cut(s) 21, 45, 135, 384, 389, 413, 426, 585
BssNI GRCGYC 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 64, 233
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 2 cut(s) 479, 923
BstBI TTCGAA 1 cut(s) 942
BstC8I GCNNGC 3 cut(s) 271, 547, 810
BstDEI CTNAG 3 cut(s) 537, 723, 906
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 3 cut(s) 249, 664, 743
BstFNI CGCG 3 cut(s) 300, 315, 549
BstH2I RGCGCY 2 cut(s) 120, 345
BstHHI GCGC 4 cut(s) 119, 302, 315, 344
BstKTI GATC 8 cut(s) 24, 48, 138, 387, 392, 416, 429, 588
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 8 cut(s) 21, 45, 135, 384, 389, 413, 426, 585
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 8 cut(s) 131, 275, 358, 367, 479, 809, 890, 923
BstNSI RCATGY 2 cut(s) 208, 888
BstSCI CCNGG 2 cut(s) 109, 239
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 3 cut(s) 300, 315, 549
BstV1I GCAGC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 3 cut(s) 83, 107, 529
BtgI CCRYGG 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 665
BtsCI GGATG 3 cut(s) 249, 664, 743
BtsIMutI CAGTG 2 cut(s) 77, 601
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 271, 547, 810
CfoI GCGC 4 cut(s) 119, 302, 315, 344
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 866
CviAII CATG 5 cut(s) 205, 322, 438, 755, 885
CviQI GTAC 1 cut(s) 866
DdeI CTNAG 3 cut(s) 537, 723, 906
DinI GGCGCC 1 cut(s) 118
DpnI GATC 8 cut(s) 23, 47, 137, 386, 391, 415, 428, 587
DpnII GATC 8 cut(s) 21, 45, 135, 384, 389, 413, 426, 585
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 476
Eco81I CCTNAGG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
FaeI CATG 5 cut(s) 208, 325, 441, 758, 888
FaqI GGGAC 1 cut(s) 41
FatI CATG 5 cut(s) 204, 321, 437, 754, 884
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 2 cut(s) 384, 585
Fnu4HI GCNGC 1 cut(s) 353
FokI GGATG 3 cut(s) 236, 651, 750
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 353
FspBI CTAG 1 cut(s) 339
GlaI GCGC 4 cut(s) 118, 301, 314, 343
GluI GCNGC 1 cut(s) 353
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 2 cut(s) 120, 345
HaeIII GGCC 3 cut(s) 83, 107, 529
HapII CCGG 4 cut(s) 111, 213, 240, 483
HhaI GCGC 4 cut(s) 119, 302, 315, 344
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 5 cut(s) 208, 325, 441, 758, 888
Hin6I GCGC 4 cut(s) 117, 300, 313, 342
HinP1I GCGC 4 cut(s) 117, 300, 313, 342
HindIII AAGCTT 2 cut(s) 421, 747
HinfI GANTC 4 cut(s) 216, 644, 655, 788
HpaII CCGG 4 cut(s) 111, 213, 240, 483
HphI GGTGA 3 cut(s) 525, 710, 797
Hpy188I TCNGA 4 cut(s) 21, 389, 456, 515
Hpy188III TCNNGA 7 cut(s) 25, 100, 175, 213, 220, 289, 839
Hpy99I CGWCG 3 cut(s) 191, 194, 308
HpyAV CCTTC 7 cut(s) 7, 97, 178, 451, 540, 692, 904
HpyCH4III ACNGT 2 cut(s) 64, 233
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 269, 441, 711, 884, 926
HpyF10VI GCNNNNNNNGC 8 cut(s) 131, 275, 358, 367, 479, 809, 890, 923
HpyF3I CTNAG 3 cut(s) 537, 723, 906
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 5 cut(s) 208, 325, 441, 758, 888
HspAI GCGC 4 cut(s) 117, 300, 313, 342
KasI GGCGCC 1 cut(s) 116
Kpn2I TCCGGA 1 cut(s) 212
Ksp22I TGATCA 2 cut(s) 384, 585
Kzo9I GATC 8 cut(s) 21, 45, 135, 384, 389, 413, 426, 585
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 3 cut(s) 684, 890, 914
Lsp1109I GCAGC 1 cut(s) 339
LweI GCATC 4 cut(s) 30, 258, 469, 673
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 3 cut(s) 289, 688, 757
MalI GATC 8 cut(s) 23, 47, 137, 386, 391, 415, 428, 587
MbiI CCGCTC 1 cut(s) 278
MboI GATC 8 cut(s) 21, 45, 135, 384, 389, 413, 426, 585
MboII GAAGA 1 cut(s) 377
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 3 cut(s) 204, 372, 805
MluCI AATT 3 cut(s) 727, 872, 918
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 8 cut(s) 175, 460, 521, 532, 535, 852, 958, 959
Mph1103I ATGCAT 1 cut(s) 886
MroI TCCGGA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 750
MspI CCGG 4 cut(s) 111, 213, 240, 483
MspR9I CCNGG 2 cut(s) 111, 241
Mva1269I GAATGC 1 cut(s) 284
MvnI CGCG 3 cut(s) 300, 315, 549
MwoI GCNNNNNNNGC 8 cut(s) 131, 275, 358, 367, 479, 809, 890, 923
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 2 cut(s) 111, 241
NdeII GATC 8 cut(s) 21, 45, 135, 384, 389, 413, 426, 585
NlaIII CATG 5 cut(s) 208, 325, 441, 758, 888
NlaIV GGNNCC 3 cut(s) 108, 118, 487
NmeAIII GCCGAG 2 cut(s) 127, 162
NmuCI GTSAC 2 cut(s) 289, 688
NsiI ATGCAT 1 cut(s) 886
NspI RCATGY 2 cut(s) 208, 888
NspV TTCGAA 1 cut(s) 942
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 3 cut(s) 60, 189, 312
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 3 cut(s) 216, 644, 788
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 354
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 1 cut(s) 649
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 649
Psp124BI GAGCTC 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 3 cut(s) 108, 118, 487
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 389
PsyI GACNNNGTC 1 cut(s) 53
PvuI CGATCG 1 cut(s) 138
RgaI GCGATCGC 1 cut(s) 138
RsaI GTAC 1 cut(s) 867
RsaNI GTAC 1 cut(s) 866
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 1 cut(s) 353
Sau3AI GATC 8 cut(s) 21, 45, 135, 384, 389, 413, 426, 585
Sau96I GGNCC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 867
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 111, 241
SduI GDGCHC 3 cut(s) 204, 372, 805
SfaAI GCGATCGC 1 cut(s) 138
SfaNI GCATC 4 cut(s) 30, 258, 469, 673
SfoI GGCGCC 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 942
SgfI GCGATCGC 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 356, 608
SmoI CTYRAG 2 cut(s) 356, 608
Sse9I AATT 3 cut(s) 727, 872, 918
SsiI CCGC 4 cut(s) 123, 276, 393, 764
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 109, 239
TaaI ACNGT 2 cut(s) 64, 233
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 48, 258, 372, 942
TasI AATT 3 cut(s) 727, 872, 918
TatI WGTACW 1 cut(s) 865
TfiI GAWTC 3 cut(s) 216, 644, 788
TscAI CASTG 2 cut(s) 84, 601
TseFI GTSAC 2 cut(s) 289, 688
TseI GCWGC 1 cut(s) 352
Tsp45I GTSAC 2 cut(s) 289, 688
TspDTI ATGAA 5 cut(s) 160, 310, 657, 743, 780
TspGWI ACGGA 2 cut(s) 321, 722
TspRI CASTG 2 cut(s) 84, 601
Tth111I GACNNNGTC 1 cut(s) 53
XapI RAATTY 2 cut(s) 727, 872
XceI RCATGY 2 cut(s) 208, 888
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 867
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.