Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

35263501 .. 35264480

Gene Structure 980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G023990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTGATGAGAAGGGTCTAATCGTGAGTTTCGGGGAGATGCTGATCGACTTCGTGCCCACCGTTTCGGGTGTTTCGCTAGCAGAAGCCCCGGCTTTCTTGAAAGCCCCAGGTGGCGCCCCCGCCAAAGTGGCGATCGCTGTGTCTCGGCTCGGTGGCAACTCCTCCTTCGTCGGAAAGCTCGGCTTTGACGAGTTCGGGCACATGCTCGCTGGAATCTTGAAGGACAATGTGTTCGACCAAGGCGCACGCACCGCTCTGGCCTTCGTAACCCTACGAGCTGACGGGGAGCGCGAGTTCATGTTCTACCGAAACCCTAGCGCTGATATGCTGCTCAAGCCCGAAGAGCTCAATTTCGAGCTGATCAGATCAGCCAAAGTGTTCCATTATGGATCAATAAGCTTGATTATGGAACCATGTAGGTCGGCACATCTAAAGGCAATGGAGGTCGCTAAAGATGCTGGTGCCTTGCTTTCCTACGACCCGAACCTCAGGCTACCACTGTGGCCCTCACCGGAGGAGGCACGCGAGCAGATACTGAGTATATGGGAAAAGGCTGAAGTCATCAAGGTCAGTGATGTGGAGCTTGAGTTTCTCACCGGAAATCCCAACATTGATGATGAATCAGCCATGACCCTGTGGCACCCTAACTTGAAGCTCCTCCTCGTCACTCTTGGTGAAAAGGGTTGCAGATACTACACCAAGAATTTTCGTGGATGTGTGGAAGCTTTTCATGTAACTGCGGTAGATACTACTGGGGCTGGTGATTCATTTGTGGGTGCTCTGCTCGCAAAGATTGTTGATAACCAATCTGTTCTTGATGATGAGCAAAAGTTGAGGGAGGTACTCAAATTTGCAAATGCATGTGGAGCAATAACAACTACTAAGAAGGGAGCAATTCCTGCACTCCCCACTGAGTCTGAAGTCCTCGCCTTAATCAAAGGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

316

Amino Acids

34.22

Weight (kDa)

5.13

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	7 - 305	1.8e-65	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	116, 464, 642
AccBSI	CCGCTC	1 cut(s)	257
AccII	CGCG	2 cut(s)	294, 528
AciI	CCGC	3 cut(s)	123, 255, 743
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	706, 851
AcuI	CTGAAG	2 cut(s)	579, 942
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	846
AfeI	AGCGCT	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	103, 223, 655
AjnI	CCWGG	1 cut(s)	109
AloI	GAACNNNNNNTCC	4 cut(s)	218, 250, 281, 313
AluBI	AGCT	8 cut(s)	181, 281, 349, 361, 402, 586, 658, 728
AluI	AGCT	8 cut(s)	181, 281, 349, 361, 402, 586, 658, 728
Alw21I	GWGCWC	2 cut(s)	351, 784
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	400
AlwNI	CAGNNNCTG	1 cut(s)	538
Aor51HI	AGCGCT	1 cut(s)	322
AoxI	GGCC	2 cut(s)	261, 506
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	2 cut(s)	706, 851
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AsiSI	GCGATCGC	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	729
AspLEI	GCGC	4 cut(s)	119, 248, 294, 323
AspS9I	GGNCC	1 cut(s)	507
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	4 cut(s)	504, 589, 689, 776
AsuNHI	GCTAGC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	491
BaeGI	GKGCMC	2 cut(s)	60, 204
BanI	GGYRCC	3 cut(s)	116, 464, 642
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	2 cut(s)	351, 784
BbvI	GCAGC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	2 cut(s)	80, 318
BfoI	RGCGCY	2 cut(s)	120, 324
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	92, 111
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	4 cut(s)	118, 414, 466, 644
BmrFI	CCNGG	2 cut(s)	92, 111
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	2 cut(s)	30, 448
BmtI	GCTAGC	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	765
BpuEI	CTTGAG	2 cut(s)	320, 608
BpuMI	CCSGG	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	90, 109, 241
BsaWI	WCCGGW	2 cut(s)	514, 599
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 575, 605
Bse1I	ACTGG	1 cut(s)	760
Bse21I	CCTNAGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	90, 109, 241
BseGI	GGATG	1 cut(s)	722
BseJI	GATNNNNATC	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	3 cut(s)	505, 530, 906
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	4 cut(s)	154, 533, 650, 653
BseSI	GKGCMC	2 cut(s)	60, 204
BseXI	GCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	888
Bsh1236I	CGCG	2 cut(s)	294, 528
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	263, 508
BshNI	GGYRCC	3 cut(s)	116, 464, 642
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	351, 784
BsiSI	CCGG	3 cut(s)	92, 515, 600
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	263, 508
Bsp1286I	GDGCHC	4 cut(s)	60, 204, 351, 784
Bsp143I	GATC	5 cut(s)	45, 135, 363, 368, 392
BspACI	CCGC	3 cut(s)	123, 255, 743
BspANI	GGCC	2 cut(s)	263, 508
BspCNI	CTCAG	3 cut(s)	504, 531, 907
BspFNI	CGCG	2 cut(s)	294, 528
BspLI	GGNNCC	4 cut(s)	118, 414, 466, 644
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	339
BspT107I	GGYRCC	3 cut(s)	116, 464, 642
BsrBI	CCGCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	760
BssECI	CCNNGG	3 cut(s)	90, 109, 241
BssMI	GATC	5 cut(s)	45, 135, 363, 368, 392
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	64, 504
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstC8I	GCNNGC	6 cut(s)	81, 210, 250, 526, 530, 789
BstDEI	CTNAG	4 cut(s)	491, 539, 885, 915
BstF5I	GGATG	1 cut(s)	722
BstFNI	CGCG	2 cut(s)	294, 528
BstH2I	RGCGCY	2 cut(s)	120, 324
BstHHI	GCGC	4 cut(s)	119, 248, 294, 323
BstKTI	GATC	5 cut(s)	48, 138, 366, 371, 395
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	5 cut(s)	45, 135, 363, 368, 392
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 254, 337, 346, 458, 788, 869, 902
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	2 cut(s)	208, 867
BstSCI	CCNGG	2 cut(s)	90, 109
BstSLI	GKGCMC	2 cut(s)	60, 204
BstUI	CGCG	2 cut(s)	294, 528
BstV1I	GCAGC	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	263, 508
BtsCI	GGATG	1 cut(s)	722
BtsIMutI	CAGTG	3 cut(s)	500, 580, 912
Cac8I	GCNNGC	6 cut(s)	81, 210, 250, 526, 530, 789
CaiI	CAGNNNCTG	1 cut(s)	538
CfoI	GCGC	4 cut(s)	119, 248, 294, 323
Cfr13I	GGNCC	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	845
CviAII	CATG	6 cut(s)	205, 301, 417, 631, 734, 864
CviQI	GTAC	1 cut(s)	845
DdeI	CTNAG	4 cut(s)	491, 539, 885, 915
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	5 cut(s)	47, 137, 365, 370, 394
DpnII	GATC	5 cut(s)	45, 135, 363, 368, 392
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	579, 942
Eco81I	CCTNAGG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	6 cut(s)	208, 304, 420, 634, 737, 867
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	6 cut(s)	204, 300, 416, 630, 733, 863
FauI	CCCGC	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	1 cut(s)	729
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	2 cut(s)	80, 318
GlaI	GCGC	4 cut(s)	118, 247, 293, 322
GluI	GCNGC	1 cut(s)	332
HaeII	RGCGCY	2 cut(s)	120, 324
HaeIII	GGCC	2 cut(s)	263, 508
HapII	CCGG	3 cut(s)	92, 515, 600
HhaI	GCGC	4 cut(s)	119, 248, 294, 323
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	6 cut(s)	208, 304, 420, 634, 737, 867
Hin6I	GCGC	4 cut(s)	117, 246, 292, 321
HinP1I	GCGC	4 cut(s)	117, 246, 292, 321
HindIII	AAGCTT	2 cut(s)	400, 726
HinfI	GANTC	4 cut(s)	216, 623, 767, 917
HpaII	CCGG	3 cut(s)	92, 515, 600
HphI	GGTGA	4 cut(s)	504, 589, 689, 776
Hpy188I	TCNGA	3 cut(s)	176, 368, 922
Hpy188III	TCNNGA	4 cut(s)	25, 100, 220, 818
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	5 cut(s)	7, 178, 217, 274, 883
HpyCH4III	ACNGT	2 cut(s)	64, 504
HpyCH4V	TGCA	4 cut(s)	690, 857, 863, 905
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 254, 337, 346, 458, 788, 869, 902
HpyF3I	CTNAG	4 cut(s)	491, 539, 885, 915
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	208, 304, 420, 634, 737, 867
HspAI	GCGC	4 cut(s)	117, 246, 292, 321
KasI	GGCGCC	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	5 cut(s)	45, 135, 363, 368, 392
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	5 cut(s)	289, 583, 663, 869, 893
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	2 cut(s)	30, 448
MaeI	CTAG	2 cut(s)	80, 318
MaeIII	GTNAC	3 cut(s)	268, 667, 736
MalI	GATC	5 cut(s)	47, 137, 365, 370, 394
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	5 cut(s)	45, 135, 363, 368, 392
MboII	GAAGA	1 cut(s)	356
MhlI	GDGCHC	4 cut(s)	60, 204, 351, 784
MluCI	AATT	4 cut(s)	352, 706, 851, 897
Mly113I	GGCGCC	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	926
MmeI	TCCRAC	1 cut(s)	154
Mph1103I	ATGCAT	1 cut(s)	865
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	1 cut(s)	935
MspI	CCGG	3 cut(s)	92, 515, 600
MspR9I	CCNGG	2 cut(s)	92, 111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	2 cut(s)	294, 528
MwoI	GCNNNNNNNGC	8 cut(s)	131, 254, 337, 346, 458, 788, 869, 902
NarI	GGCGCC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	5 cut(s)	45, 135, 363, 368, 392
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	6 cut(s)	208, 304, 420, 634, 737, 867
NlaIV	GGNNCC	4 cut(s)	118, 414, 466, 644
NmeAIII	GCCGAG	2 cut(s)	127, 162
NmuCI	GTSAC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	865
NspI	RCATGY	2 cut(s)	208, 867
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 189, 291
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	3 cut(s)	216, 623, 767
PkrI	GCNGC	1 cut(s)	333
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	1 cut(s)	925
PluTI	GGCGCC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	925
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	4 cut(s)	118, 414, 466, 644
PspPI	GGNCC	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	538
PvuI	CGATCG	1 cut(s)	138
RgaI	GCGATCGC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	846
RsaNI	GTAC	1 cut(s)	845
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	935
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	5 cut(s)	45, 135, 363, 368, 392
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	2 cut(s)	92, 111
SduI	GDGCHC	4 cut(s)	60, 204, 351, 784
SfaAI	GCGATCGC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	30, 448
SfoI	GGCGCC	1 cut(s)	118
SgfI	GCGATCGC	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	335, 587
SmoI	CTYRAG	2 cut(s)	335, 587
Sse9I	AATT	4 cut(s)	352, 706, 851, 897
SsiI	CCGC	3 cut(s)	123, 255, 743
SspDI	GGCGCC	1 cut(s)	116
SspMI	CTAG	2 cut(s)	80, 318
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	90, 109
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	64, 504
TaqI	TCGA	3 cut(s)	48, 237, 357
TasI	AATT	4 cut(s)	352, 706, 851, 897
TfiI	GAWTC	3 cut(s)	216, 623, 767
Tru1I	TTAA	1 cut(s)	935
Tru9I	TTAA	1 cut(s)	935
TscAI	CASTG	3 cut(s)	507, 580, 919
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	4 cut(s)	289, 636, 722, 759
TspRI	CASTG	3 cut(s)	507, 580, 919
XapI	RAATTY	2 cut(s)	706, 851
XceI	RCATGY	2 cut(s)	208, 867
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	2 cut(s)	80, 318
Zsp2I	ATGCAT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.