Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Forward (+)

11127001 .. 11135744

Gene Structure 8744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0072300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGAAAGTGGCAGTGATTGGTTCTGGTATTAGTGGTTTGGTCTCAGCCTATTTTCTTGCAAAAGAAGGCGTTGAAGTGGTTCTATATGAGAAAAAAGACTACCTGGGTGATCATGCCAGGACTGTCACATATGATGGTGTTGATTTGGACCTTGGTTTCATGGTCTTCAATCATGTAATGTATCCAAATATGATGGAGTTCTTTGAGAGCCTTGGAGTGGATATGGAGACATGCCACATGTCCTTCTCAGTGAGTTTAGATAAAGGACGGGGCTGTGAATGGGGTAGTCGAAATAGTCTCTCAAGCTTGTTTGCAGAAAAGAAGAACTTGTTCAACCCATACTTCTGGAAAATGCTTCGAGAAATCACCAAGTTTAAAAATGATTTGATCAGTTATCTTGAGGTGCGTGAGAGTAACCCAGACATTGACCGGAATGAAACCTTGGGGCAGTTTATTGAGTCACATCACTACTCTGAACTATTTCAGAAGGCTTACCTTATTCCAATATGTTGTTCAATCTTGTCGTGTCCTTCAGAAGGAGTTCTAAGCTTCTCAGCTTTCTCAGTGCTTTCGGTTTGTCGCAATCATCATCTACTTCAGCTATTTGGCGGCCCACAATGGCTTACCATCAAATGGGGTTCACATTGTTATGTGAAGAAGGTGAAAGAAGTGTTGGAGAGTAAAGGGTGTCAGATAAGAACCGGCTGTGAGGTGCATAAAGTTTCCACAACTGAAGAGGGTTGCACTGTTTTTACTGGAGATGGTTTTGAGGAAATATACAATGGATGCATTATAGCTATCCAAGCCCCCAATGCCGTGAGAATATTAGGAGAACAGGCAACACCAGATGAACTGAGAATACTTGGCGCGTTCCAATATGTGTACTGTGATATTTTCCTTCATCGTGACAAAACTTTAATGCCCCTAAATCTAGCAGCATGGAGTGCATTAAACTATCTTGGAAGTACTGACAACAAAGTATGTTTGACATACTGGCTCAATCAGCTTCAGAACCTCGGTGAAACAAGTCAACCATATCTTGTGACACTCAATCCAGATCATACACCAAACCACACCTTGCTTAAGTGGTCAACAAGCCATCCAGTCCTATCTGTTGCTGCATCGAAAGCTTCGCTGGAGCTTCCTCATATTCAAGGAAAGAGAGGAATTTGGTTTTGTGGAGCATACCAGGGTTATGGCTTCCATGAGGATGGGCTAAAGGCTGGAGTGGCTGCAGCACATGGTATGCTTGGAAAAGGTTGTGCCCTGTTGGGAAACCCAAAACATATGGCTCTTTCATTGACGGAAACAGCAGCACGCCTATTTGTTACTAGATTTTTTAGACATTATATATCTACCGGATGTTTAGTCTTATTAGAAGAGGGAGGCACAATGTTCACCTTTGAGGGAAGCAGGAAGGACTGTTCTCTAAAATCCATTCTTAAAGTTCACAGTCCTCAGTTTTACTGGAAAGTAATGACACAGGCTGATCTAGGCATTGCAGATGCATATATCAGTGGTGATTTTTCTTTTGATGATAAAGACCGAGGTCTTCTAAATCTTTTTATGCTTCTCATTGCCAACAGAGATTCTAATGCCTCAAAATCAAACAAGAAAAGGGGATGGTGGCAGCCTTTGTTTTTCACAGCCACTATAGCGTCAGCCAAAGGTGTCTTTCAGCATGCTTTAAGGAAAAATACTCTTACACAGGCTCGAAGGAACATATCTCGTCATTATGATCTGAGTAATGAACTATTTTCGCTGTTCTTGGGTGAAACAATGATGTACTCCACTGCAATATTTAAGACAGAAGATGAGGATTTGAATACTGCACAGCTTAGGAAAATCTCTATTCTCATTGATAAGGCTAAAATAGATGAGAACCATGAGGTTCTAGATATTGGTTGTGGTTGGGGAACCTTTGCTATTGAAGCAGTCAAACAAACGGGCTGCAGATACACTGGCATCACTCTATCTGAGGAACAACTTAAATTTGCTGAAAAGAAAGTGAAAGATGCTGGACTTCAGCACCGGATCAAGTTCCTTCTGTGTGACTACCGCCAATTGCCTTCTTGCCACAAATACGACAGAATCATATCTTGCGAGATGCTAGAACATGTCGGCCATGAATTTGTGGATGACTTCTTTTCTTGCTGTGAGTCTGTACTGGCAAAAAATGGGCTTTTTATTCTCCAGTTCATATCTATGCCGGATGTATTCTATGATGAGTACCTACGAAGTTCAGGCTTCATGAAGGAATATATATTTCCTGGTGGATGTCTACCTTCATTAAGTAGGGTAACATCAGCCATGGCCACTTCTTCTAGACTCTGTGTGGAGCACTTGGAAAACATTGGAATTCATTATTATCAAACACTACGATGTTGGAGAAAGAATTTCTTAGAGAGACAGAGTGAAATACTCGCTCTTGGATTCAATGAAAATTTCATTCGAACATGGGAATATTATTTTGATTATTGTGCTGCTGGTTTCAAGTCACATACACTTGGAGACTACCAGATTGTGTTTTCACGTCCTGGTAATGCTCTCACATTCAACAATCCATATAAGGGTTTCCCTTCAGCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

863

Amino Acids

97.8

Weight (kDa)

6.57

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	2 - 39	1.3e-07	FAD dependent oxidoreductase
NAD_binding_8	PF13450	5 - 71	9.1e-16	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	10 - 276	6e-17	Flavin containing amine oxidoreductase
CMAS	PF02353	568 - 836	8.2e-79	Mycolic acid cyclopropane synthetase
MTS	PF05175	618 - 729	4.8e-06	Methyltransferase small domain
Methyltransf_23	PF13489	624 - 735	1.6e-09	Methyltransferase domain
Methyltransf_31	PF13847	626 - 735	3.4e-13	Methyltransferase domain
Methyltransf_25	PF13649	631 - 727	4.4e-17	Methyltransferase domain
Methyltransf_11	PF08241	632 - 731	2.6e-14	Methyltransferase domain
Methyltransf_12	PF08242	632 - 729	9.5e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	2281
AccII	CGCG	1 cut(s)	869
AciI	CCGC	2 cut(s)	609, 2059
AclWI	GGATC	1 cut(s)	2042
AcoI	YGGCCR	2 cut(s)	2122, 2313
AcsI	RAATTY	6 cut(s)	1167, 1991, 2129, 2358, 2395, 2443
AcuI	CTGAAG	6 cut(s)	516, 581, 753, 992, 2009, 2565
AfaI	GTAC	5 cut(s)	884, 967, 1787, 2166, 2231
AfiI	CCNNNNNNNGG	4 cut(s)	217, 536, 633, 2570
AflII	CTTAAG	1 cut(s)	1082
AflIII	ACRYGT	2 cut(s)	237, 2116
AjiI	CACGTC	1 cut(s)	2534
AjnI	CCWGG	5 cut(s)	102, 116, 1188, 2269, 2536
AjuI	GAANNNNNNNTTGG	6 cut(s)	425, 457, 496, 528, 656, 688
AloI	GAACNNNNNNTCC	2 cut(s)	1408, 1440
AluBI	AGCT	9 cut(s)	306, 549, 557, 601, 797, 1006, 1130, 1141, 1837
AluI	AGCT	9 cut(s)	306, 549, 557, 601, 797, 1006, 1130, 1141, 1837
Alw21I	GWGCWC	1 cut(s)	2343
Alw26I	GTCTC	5 cut(s)	46, 221, 302, 2401, 2505
AlwI	GGATC	1 cut(s)	2042
AoxI	GGCC	3 cut(s)	610, 2122, 2313
ApeKI	GCWGC	8 cut(s)	935, 1118, 1232, 1235, 1313, 1630, 1950, 2483
ApoI	RAATTY	6 cut(s)	1167, 1991, 2129, 2358, 2395, 2443
Asp700I	GAANNNNTTC	4 cut(s)	78, 329, 480, 540
AspLEI	GCGC	1 cut(s)	869
AspS9I	GGNCC	2 cut(s)	148, 611
AsuHPI	GGTGA	7 cut(s)	119, 358, 673, 1031, 1390, 1532, 1784
AsuII	TTCGAA	1 cut(s)	2452
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	1267
BalI	TGGCCA	1 cut(s)	2315
BbsI	GAAGAC	2 cut(s)	157, 1544
Bbv12I	GWGCWC	1 cut(s)	2343
BbvI	GCAGC	8 cut(s)	947, 1105, 1219, 1247, 1325, 1642, 1937, 2470
BccI	CCATC	7 cut(s)	128, 187, 635, 755, 1107, 1205, 1617
BceAI	ACGGC	1 cut(s)	800
BciT130I	CCWGG	5 cut(s)	104, 118, 1190, 2271, 2538
BciVI	GTATCC	1 cut(s)	192
BclI	TGATCA	2 cut(s)	109, 387
BcoDI	GTCTC	5 cut(s)	46, 221, 302, 2401, 2505
BfaI	CTAG	6 cut(s)	932, 1332, 1493, 1895, 2111, 2325
BfmI	CTRYAG	3 cut(s)	1233, 1653, 1951
BfrI	CTTAAG	1 cut(s)	1082
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	9 cut(s)	610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
BlsI	GCNGC	9 cut(s)	611, 937, 1120, 1234, 1237, 1315, 1632, 1952, 2485
BmcAI	AGTACT	1 cut(s)	967
Bme1390I	CCNGG	5 cut(s)	104, 118, 1190, 2271, 2538
Bme18I	GGWCC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	2534
BmgT120I	GGNCC	2 cut(s)	148, 611
BmiI	GGNNCC	1 cut(s)	1918
BmrFI	CCNGG	5 cut(s)	104, 118, 1190, 2271, 2538
BmsI	GCATC	6 cut(s)	776, 1130, 1495, 1974, 2005, 2097
BoxI	GACNNNNGTC	1 cut(s)	1548
BpiI	GAAGAC	2 cut(s)	157, 1544
BpmI	CTGGAG	4 cut(s)	777, 1157, 1245, 2177
Bpu10I	CCTNAGC	1 cut(s)	1838
Bpu14I	TTCGAA	1 cut(s)	2452
BpuEI	CTTGAG	2 cut(s)	286, 419
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	8 cut(s)	103, 151, 211, 441, 1015, 1189, 1546, 2310
BsaWI	WCCGGW	3 cut(s)	429, 1358, 2031
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 536, 633, 2570
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	7 cut(s)	760, 998, 1103, 1472, 1966, 2172, 2194
Bse3DI	GCAATG	2 cut(s)	1497, 1575
BseBI	CCWGG	5 cut(s)	104, 118, 1190, 2271, 2538
BseDI	CCNNGG	8 cut(s)	103, 151, 211, 441, 1015, 1189, 1546, 2310
BseGI	GGATG	8 cut(s)	791, 1099, 1216, 1367, 1628, 2143, 2218, 2282
BseLI	CCNNNNNNNGG	4 cut(s)	217, 536, 633, 2570
BseMI	GCAATG	2 cut(s)	1497, 1575
BseMII	CTCAG	8 cut(s)	57, 261, 567, 576, 845, 1472, 1733, 1968
BseNI	ACTGG	7 cut(s)	760, 998, 1103, 1472, 1966, 2172, 2194
BseSI	GKGCMC	1 cut(s)	1267
BseXI	GCAGC	8 cut(s)	947, 1105, 1219, 1247, 1325, 1642, 1937, 2470
BsgI	GTGCAG	1 cut(s)	1815
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	3 cut(s)	612, 2124, 2315
BsiHKAI	GWGCWC	1 cut(s)	2343
BsiSI	CCGG	5 cut(s)	430, 702, 1359, 2032, 2210
BslI	CCNNNNNNNGG	4 cut(s)	217, 536, 633, 2570
BsmAI	GTCTC	5 cut(s)	46, 221, 302, 2401, 2505
BsnI	GGCC	3 cut(s)	612, 2124, 2315
Bso31I	GGTCTC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	2452
Bsp1286I	GDGCHC	2 cut(s)	1267, 2343
Bsp143I	GATC	6 cut(s)	109, 387, 1057, 1489, 1738, 2034
Bsp19I	CCATGG	1 cut(s)	2310
BspACI	CCGC	2 cut(s)	609, 2059
BspANI	GGCC	3 cut(s)	612, 2124, 2315
BspCNI	CTCAG	8 cut(s)	56, 260, 566, 575, 846, 1471, 1734, 1969
BspFNI	CGCG	1 cut(s)	869
BspHI	TCATGA	1 cut(s)	2250
BspLI	GGNNCC	1 cut(s)	1918
BspMAI	CTGCAG	2 cut(s)	1237, 1955
BspPI	GGATC	1 cut(s)	2042
BspT104I	TTCGAA	1 cut(s)	2452
BspTI	CTTAAG	1 cut(s)	1082
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	1497, 1575
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	7 cut(s)	760, 998, 1103, 1472, 1966, 2172, 2194
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	8 cut(s)	103, 151, 211, 441, 1015, 1189, 1546, 2310
BssMI	GATC	6 cut(s)	109, 387, 1057, 1489, 1738, 2034
BssT1I	CCWWGG	4 cut(s)	151, 211, 441, 2310
Bst2UI	CCWGG	5 cut(s)	104, 118, 1190, 2271, 2538
Bst4CI	ACNGT	5 cut(s)	124, 748, 887, 1424, 1454
Bst6I	CTCTTC	2 cut(s)	729, 1374
BstAFI	CTTAAG	1 cut(s)	1082
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstBI	TTCGAA	1 cut(s)	2452
BstC8I	GCNNGC	2 cut(s)	1318, 1683
BstDSI	CCRYGG	1 cut(s)	2310
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	8 cut(s)	791, 1099, 1216, 1367, 1628, 2143, 2218, 2282
BstFNI	CGCG	1 cut(s)	869
BstHHI	GCGC	1 cut(s)	869
BstKTI	GATC	6 cut(s)	112, 390, 1060, 1492, 1741, 2037
BstMAI	GTCTC	5 cut(s)	46, 221, 302, 2401, 2505
BstMBI	GATC	6 cut(s)	109, 387, 1057, 1489, 1738, 2034
BstMWI	GCNNNNNNNGC	8 cut(s)	803, 812, 944, 1003, 1127, 1229, 1655, 1931
BstNI	CCWGG	5 cut(s)	104, 118, 1190, 2271, 2538
BstNSI	RCATGY	4 cut(s)	234, 241, 1685, 2120
BstPAI	GACNNNNGTC	1 cut(s)	1548
BstSCI	CCNGG	5 cut(s)	102, 116, 1188, 2269, 2536
BstSFI	CTRYAG	3 cut(s)	1233, 1653, 1951
BstSLI	GKGCMC	1 cut(s)	1267
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	8 cut(s)	947, 1105, 1219, 1247, 1325, 1642, 1937, 2470
BstV2I	GAAGAC	2 cut(s)	157, 1544
BstXI	CCANNNNNNTGG	3 cut(s)	345, 1196, 1211
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	612, 2124, 2315
BtgI	CCRYGG	1 cut(s)	2310
BtrI	CACGTC	1 cut(s)	2534
BtsCI	GGATG	8 cut(s)	791, 1099, 1216, 1367, 1628, 2143, 2218, 2282
BtsI	GCAGTG	2 cut(s)	18, 1791
BtsIMutI	CAGTG	7 cut(s)	18, 255, 570, 744, 1522, 1791, 1959
Cac8I	GCNNGC	2 cut(s)	1318, 1683
CciI	TCATGA	1 cut(s)	2250
CfoI	GCGC	1 cut(s)	869
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	2 cut(s)	148, 611
CseI	GACGC	1 cut(s)	1647
Csp6I	GTAC	5 cut(s)	883, 966, 1786, 2165, 2230
CviQI	GTAC	5 cut(s)	883, 966, 1786, 2165, 2230
DpnI	GATC	6 cut(s)	111, 389, 1059, 1491, 1740, 2036
DpnII	GATC	6 cut(s)	109, 387, 1057, 1489, 1738, 2034
DraI	TTTAAA	1 cut(s)	376
EaeI	YGGCCR	2 cut(s)	2122, 2313
Eam1104I	CTCTTC	2 cut(s)	729, 1374
EarI	CTCTTC	2 cut(s)	729, 1374
Eco130I	CCWWGG	4 cut(s)	151, 211, 441, 2310
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	6 cut(s)	516, 581, 753, 992, 2009, 2565
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	2358
EcoRII	CCWGG	5 cut(s)	102, 116, 1188, 2269, 2536
EcoT14I	CCWWGG	4 cut(s)	151, 211, 441, 2310
EcoT22I	ATGCAT	2 cut(s)	791, 1510
ErhI	CCWWGG	4 cut(s)	151, 211, 441, 2310
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 2384, 2416
FauNDI	CATATG	2 cut(s)	130, 1287
FbaI	TGATCA	2 cut(s)	109, 387
FblI	GTMKAC	1 cut(s)	2281
Fnu4HI	GCNGC	9 cut(s)	610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
FokI	GGATG	8 cut(s)	798, 1086, 1223, 1374, 1635, 2150, 2225, 2289
Fsp4HI	GCNGC	9 cut(s)	610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
FspBI	CTAG	6 cut(s)	932, 1332, 1493, 1895, 2111, 2325
GlaI	GCGC	1 cut(s)	868
GluI	GCNGC	9 cut(s)	610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
GsuI	CTGGAG	4 cut(s)	777, 1157, 1245, 2177
HaeIII	GGCC	3 cut(s)	612, 2124, 2315
HapII	CCGG	5 cut(s)	430, 702, 1359, 2032, 2210
HgaI	GACGC	1 cut(s)	1647
HhaI	GCGC	1 cut(s)	869
Hin6I	GCGC	1 cut(s)	867
HinP1I	GCGC	1 cut(s)	867
HincII	GTYRAC	2 cut(s)	1031, 1092
HindII	GTYRAC	2 cut(s)	1031, 1092
HindIII	AAGCTT	3 cut(s)	304, 547, 1128
HinfI	GANTC	6 cut(s)	458, 1589, 2091, 2159, 2328, 2433
HpaII	CCGG	5 cut(s)	430, 702, 1359, 2032, 2210
HphI	GGTGA	7 cut(s)	119, 358, 673, 1031, 1390, 1532, 1784
Hpy166II	GTNNAC	7 cut(s)	641, 883, 1031, 1092, 1398, 1450, 2282
Hpy188I	TCNGA	7 cut(s)	475, 486, 535, 693, 1011, 1743, 1978
Hpy188III	TCNNGA	8 cut(s)	346, 359, 398, 905, 1055, 1895, 2251, 2325
Hpy8I	GTNNAC	7 cut(s)	641, 883, 1031, 1092, 1398, 1450, 2282
HpyCH4III	ACNGT	5 cut(s)	124, 748, 887, 1424, 1454
HpyCH4IV	ACGT	1 cut(s)	2533
HpyF10VI	GCNNNNNNNGC	8 cut(s)	803, 812, 944, 1003, 1127, 1229, 1655, 1931
HpySE526I	ACGT	1 cut(s)	2533
HspAI	GCGC	1 cut(s)	867
Ksp22I	TGATCA	2 cut(s)	109, 387
Kzo9I	GATC	6 cut(s)	109, 387, 1057, 1489, 1738, 2034
LmnI	GCTCC	3 cut(s)	1138, 1181, 2338
Lsp1109I	GCAGC	8 cut(s)	947, 1105, 1219, 1247, 1325, 1642, 1937, 2470
LweI	GCATC	6 cut(s)	776, 1130, 1495, 1974, 2005, 2097
MaeI	CTAG	6 cut(s)	932, 1332, 1493, 1895, 2111, 2325
MaeII	ACGT	1 cut(s)	2533
MaeIII	GTNAC	9 cut(s)	124, 413, 459, 905, 1042, 1327, 2051, 2299, 2496
MalI	GATC	6 cut(s)	111, 389, 1059, 1491, 1740, 2036
MboI	GATC	6 cut(s)	109, 387, 1057, 1489, 1738, 2034
MboII	GAAGA	8 cut(s)	157, 334, 667, 746, 1391, 1544, 1823, 2313
MfeI	CAATTG	1 cut(s)	2063
MhlI	GDGCHC	2 cut(s)	1267, 2343
MlsI	TGGCCA	1 cut(s)	2315
MluCI	AATT	7 cut(s)	1167, 1991, 2063, 2129, 2358, 2395, 2443
MluNI	TGGCCA	1 cut(s)	2315
MlyI	GAGTC	3 cut(s)	467, 2168, 2322
MmeI	TCCRAC	2 cut(s)	654, 2366
Mox20I	TGGCCA	1 cut(s)	2315
Mph1103I	ATGCAT	2 cut(s)	791, 1510
MroXI	GAANNNNTTC	4 cut(s)	78, 329, 480, 540
MscI	TGGCCA	1 cut(s)	2315
MseI	TTAA	9 cut(s)	375, 917, 950, 1083, 1443, 1688, 1803, 1989, 2291
MslI	CAYNNNNRTG	4 cut(s)	648, 1209, 2204, 2380
Msp20I	TGGCCA	1 cut(s)	2315
MspCI	CTTAAG	1 cut(s)	1082
MspI	CCGG	5 cut(s)	430, 702, 1359, 2032, 2210
MspR9I	CCNGG	5 cut(s)	104, 118, 1190, 2271, 2538
MunI	CAATTG	1 cut(s)	2063
MvaI	CCWGG	5 cut(s)	104, 118, 1190, 2271, 2538
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	8 cut(s)	803, 812, 944, 1003, 1127, 1229, 1655, 1931
NcoI	CCATGG	1 cut(s)	2310
NdeI	CATATG	2 cut(s)	130, 1287
NdeII	GATC	6 cut(s)	109, 387, 1057, 1489, 1738, 2034
NlaIV	GGNNCC	1 cut(s)	1918
NmuCI	GTSAC	6 cut(s)	124, 459, 905, 1042, 2051, 2496
NsiI	ATGCAT	2 cut(s)	791, 1510
NspI	RCATGY	4 cut(s)	234, 241, 1685, 2120
NspV	TTCGAA	1 cut(s)	2452
PaeI	GCATGC	1 cut(s)	1685
PagI	TCATGA	1 cut(s)	2250
PciI	ACATGT	2 cut(s)	237, 2116
PdmI	GAANNNNTTC	4 cut(s)	78, 329, 480, 540
PfeI	GAWTC	3 cut(s)	1589, 2091, 2433
PflMI	CCANNNNNTGG	1 cut(s)	633
PkrI	GCNGC	9 cut(s)	611, 937, 1120, 1234, 1237, 1315, 1632, 1952, 2485
PleI	GAGTC	3 cut(s)	466, 2167, 2322
PpsI	GAGTC	3 cut(s)	466, 2167, 2322
PscI	ACATGT	2 cut(s)	237, 2116
PshAI	GACNNNNGTC	1 cut(s)	1548
Psp6I	CCWGG	5 cut(s)	102, 116, 1188, 2269, 2536
PspGI	CCWGG	5 cut(s)	102, 116, 1188, 2269, 2536
PspN4I	GGNNCC	1 cut(s)	1918
PspPI	GGNCC	2 cut(s)	148, 611
PsrI	GAACNNNNNNTAC	2 cut(s)	843, 875
PstI	CTGCAG	2 cut(s)	1237, 1955
RsaI	GTAC	5 cut(s)	884, 967, 1787, 2166, 2231
RsaNI	GTAC	5 cut(s)	883, 966, 1786, 2165, 2230
RseI	CAYNNNNRTG	4 cut(s)	648, 1209, 2204, 2380
SaqAI	TTAA	9 cut(s)	375, 917, 950, 1083, 1443, 1688, 1803, 1989, 2291
SatI	GCNGC	9 cut(s)	610, 936, 1119, 1233, 1236, 1314, 1631, 1951, 2484
Sau3AI	GATC	6 cut(s)	109, 387, 1057, 1489, 1738, 2034
Sau96I	GGNCC	2 cut(s)	148, 611
ScaI	AGTACT	1 cut(s)	967
SchI	GAGTC	3 cut(s)	467, 2168, 2322
ScrFI	CCNGG	5 cut(s)	104, 118, 1190, 2271, 2538
SduI	GDGCHC	2 cut(s)	1267, 2343
SfaNI	GCATC	6 cut(s)	776, 1130, 1495, 1974, 2005, 2097
SfcI	CTRYAG	3 cut(s)	1233, 1653, 1951
SfuI	TTCGAA	1 cut(s)	2452
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	4 cut(s)	648, 1209, 2204, 2380
SmlI	CTYRAG	3 cut(s)	301, 398, 1082
SmoI	CTYRAG	3 cut(s)	301, 398, 1082
SphI	GCATGC	1 cut(s)	1685
Sse9I	AATT	7 cut(s)	1167, 1991, 2063, 2129, 2358, 2395, 2443
SsiI	CCGC	2 cut(s)	609, 2059
SspI	AATATT	3 cut(s)	825, 1800, 2465
SspMI	CTAG	6 cut(s)	932, 1332, 1493, 1895, 2111, 2325
StyD4I	CCNGG	5 cut(s)	102, 116, 1188, 2269, 2536
StyI	CCWWGG	4 cut(s)	151, 211, 441, 2310
TaaI	ACNGT	5 cut(s)	124, 748, 887, 1424, 1454
TaiI	ACGT	1 cut(s)	2536
TaqI	TCGA	5 cut(s)	289, 358, 1124, 1714, 2452
TaqII	GACCGA	1 cut(s)	1560
TasI	AATT	7 cut(s)	1167, 1991, 2063, 2129, 2358, 2395, 2443
TatI	WGTACW	4 cut(s)	882, 965, 1785, 2164
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	3 cut(s)	1589, 2091, 2433
Tru1I	TTAA	9 cut(s)	375, 917, 950, 1083, 1443, 1688, 1803, 1989, 2291
Tru9I	TTAA	9 cut(s)	375, 917, 950, 1083, 1443, 1688, 1803, 1989, 2291
TscAI	CASTG	7 cut(s)	18, 255, 570, 751, 1522, 1798, 1966
TseFI	GTSAC	6 cut(s)	124, 459, 905, 1042, 2051, 2496
TseI	GCWGC	8 cut(s)	935, 1118, 1232, 1235, 1313, 1630, 1950, 2483
Tsp45I	GTSAC	6 cut(s)	124, 459, 905, 1042, 2051, 2496
TspGWI	ACGGA	1 cut(s)	1319
TspRI	CASTG	7 cut(s)	18, 255, 570, 751, 1522, 1798, 1966
Van91I	CCANNNNNTGG	1 cut(s)	633
Vha464I	CTTAAG	1 cut(s)	1082
VpaK11BI	GGWCC	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	6 cut(s)	1167, 1991, 2129, 2358, 2395, 2443
XbaI	TCTAGA	2 cut(s)	1894, 2324
XceI	RCATGY	4 cut(s)	234, 241, 1685, 2120
XmiI	GTMKAC	1 cut(s)	2281
XmnI	GAANNNNTTC	4 cut(s)	78, 329, 480, 540
XspI	CTAG	6 cut(s)	932, 1332, 1493, 1895, 2111, 2325
ZrmI	AGTACT	1 cut(s)	967
Zsp2I	ATGCAT	2 cut(s)	791, 1510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.