Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000261.1

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

63430 .. 63741

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000261.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ctgaaggcccccggtggcgcccccgccaacgtggcaatcgctgtggctcggcaaggcggcagctcctctttcgtcgggaagcttggtgacgacgagttcgggcacatgctcgctggaatcttgaaggagaacggtgtctccggacagggcatcctgttcgaccaaggcgcacgtaccgctctggccttcgtgaccctacgcgctgacggagagcgcgagttcatgttctaccggaaccctagcgctgatatgctgctcaagcccgaagagctcaatttggagctgatcagatccgccaaagtgttccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

103

Amino Acids

10.96

Weight (kDa)

6.11

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	179
AccII	CGCG	2 cut(s)	201, 216
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	4 cut(s)	24, 57, 177, 294
AclWI	GGATC	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	175
AfeI	AGCGCT	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	124
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	4 cut(s)	63, 82, 271, 283
AluI	AGCT	4 cut(s)	63, 82, 271, 283
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	140
Aor51HI	AGCGCT	1 cut(s)	244
AoxI	GGCC	2 cut(s)	6, 183
ApeKI	GCWGC	2 cut(s)	60, 253
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspLEI	GCGC	5 cut(s)	20, 170, 203, 216, 245
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	72, 240
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	2 cut(s)	21, 246
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	58, 61, 254
BlsI	GCNGC	3 cut(s)	59, 62, 255
Bme1390I	CCNGG	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	3 cut(s)	9, 19, 236
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	10, 163
BsaWI	WCCGGW	2 cut(s)	140, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
BseAI	TCCGGA	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	10, 163
BseGI	GGATG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	72, 240
Bsh1236I	CGCG	2 cut(s)	201, 216
BshFI	GGCC	2 cut(s)	8, 185
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	12, 141, 232
BsmAI	GTCTC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	8, 185
Bsp1286I	GDGCHC	2 cut(s)	105, 273
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	285, 290
BspACI	CCGC	4 cut(s)	24, 57, 177, 294
BspANI	GGCC	2 cut(s)	8, 185
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	201, 216
BspLI	GGNNCC	3 cut(s)	9, 19, 236
BspPI	GGATC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	10, 163
BssMI	GATC	2 cut(s)	285, 290
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	2 cut(s)	201, 216
BstH2I	RGCGCY	2 cut(s)	21, 246
BstHHI	GCGC	5 cut(s)	20, 170, 203, 216, 245
BstKTI	GATC	2 cut(s)	288, 293
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	2 cut(s)	285, 290
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 176, 259, 268
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	105
BstUI	CGCG	2 cut(s)	201, 216
BstV1I	GCAGC	2 cut(s)	72, 240
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	8, 185
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	5 cut(s)	20, 170, 203, 216, 245
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	174
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviAII	CATG	2 cut(s)	106, 223
CviJI	RGCY	8 cut(s)	8, 47, 63, 82, 185, 262, 271, 283
CviKI_1	RGCY	8 cut(s)	8, 47, 63, 82, 185, 262, 271, 283
CviQI	GTAC	1 cut(s)	174
DinI	GGCGCC	1 cut(s)	19
DpnI	GATC	2 cut(s)	287, 292
DpnII	GATC	2 cut(s)	285, 290
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	283
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	273
Eco47III	AGCGCT	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	273
EgeI	GGCGCC	1 cut(s)	19
EheI	GGCGCC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	109, 226
FaiI	YATR	3 cut(s)	107, 224, 251
FatI	CATG	2 cut(s)	105, 222
FauI	CCCGC	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	58, 61, 254
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	3 cut(s)	58, 61, 254
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	5 cut(s)	19, 169, 202, 215, 244
GluI	GCNGC	3 cut(s)	58, 61, 254
HaeII	RGCGCY	2 cut(s)	21, 246
HaeIII	GGCC	2 cut(s)	8, 185
HapII	CCGG	3 cut(s)	12, 141, 232
HhaI	GCGC	5 cut(s)	20, 170, 203, 216, 245
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	109, 226
Hin6I	GCGC	5 cut(s)	18, 168, 201, 214, 243
HinP1I	GCGC	5 cut(s)	18, 168, 201, 214, 243
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	3 cut(s)	12, 141, 232
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	4 cut(s)	76, 121, 141, 190
Hpy99I	CGWCG	2 cut(s)	77, 95
HpyAV	CCTTC	2 cut(s)	118, 196
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	2 cut(s)	30, 172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 176, 259, 268
HpySE526I	ACGT	2 cut(s)	30, 172
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	109, 226
HspAI	GCGC	5 cut(s)	18, 168, 201, 214, 243
KasI	GGCGCC	1 cut(s)	17
Kpn2I	TCCGGA	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	285, 290
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	68, 280
LpnPI	CCDG	7 cut(s)	25, 99, 131, 154, 167, 167, 245
Lsp1109I	GCAGC	2 cut(s)	72, 240
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	30, 172
MaeIII	GTNAC	2 cut(s)	86, 190
MalI	GATC	2 cut(s)	287, 292
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	2 cut(s)	285, 290
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	2 cut(s)	105, 273
MluCI	AATT	1 cut(s)	274
Mly113I	GGCGCC	1 cut(s)	18
MnlI	CCTC	1 cut(s)	76
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	310
MspI	CCGG	3 cut(s)	12, 141, 232
MspR9I	CCNGG	1 cut(s)	12
MvnI	CGCG	2 cut(s)	201, 216
MwoI	GCNNNNNNNGC	4 cut(s)	32, 176, 259, 268
NarI	GGCGCC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	285, 290
NlaIII	CATG	2 cut(s)	109, 226
NlaIV	GGNNCC	3 cut(s)	9, 19, 236
NmeAIII	GCCGAG	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	86, 190
NspI	RCATGY	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	59, 62, 255
PluTI	GGCGCC	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	273
PspN4I	GGNNCC	3 cut(s)	9, 19, 236
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	3 cut(s)	58, 61, 254
Sau3AI	GATC	2 cut(s)	285, 290
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	2 cut(s)	105, 273
SetI	ASST	6 cut(s)	33, 65, 84, 175, 273, 285
SfaNI	GCATC	1 cut(s)	159
SfoI	GGCGCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	4 cut(s)	24, 57, 177, 294
SspDI	GGCGCC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	2 cut(s)	33, 175
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	274
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	86, 190
TseI	GCWGC	2 cut(s)	60, 253
Tsp45I	GTSAC	2 cut(s)	86, 190
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	222
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.