FvH4_4g10860

Belongs to the carbohydrate kinase PfkB family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
14551162 .. 14556102
4941 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10860.t1

Sequence Viewer

Length: 972 bp
ATGGCCAACGACAAGGGTCTGATCGTTAGTTTCGGCGAGATGCTGATCGACTTCGTGCCGACGGCCTCGGGCGTCTCGCTGGCGGAAGCTCCGGGGTTCTTGAAGGCCCCTGGTGGCGCCCCCGCCAACGTGGCGATCGCGGTGGCTCGGCTCGGCGGACACGCCGCCTTCATCGGCAAACTCGGTGACGACGAGTTCGGGCACATGCTGGCCGGAATCTTGAAGGAGAACGACGTCTCCGGTGAAGGGATCCTGTTCGACCAAGGCGCACGCACCGCTCTGGCCTTCGTGACCCTACGCGCCGACGGAGAGCGCGAGTTCATGTTTTATCGGAACCCCAGCGCCGATATGCTGCTGAAGCCTGAAGAGCTCAATTTCGAGCTCATCAGATCGGCCAAAGTTTTCCACTATGGATCAATAAGTTTGATCGTGGAGCCATGCAGGTCAGCACATCTAAAGGCAATGGAGGTTGCCAAAGAAGCAGGTGCCTTGCTCTCCTATGACCCGAACCTCCGGCTACCACTGTGGCCCTCACCTGAGGAGGCATGCGAGCAGATAATGAGTATCTGGGAAAAGGCAGACGTGATCAAGGTCAGCGATGTGGAGCTTGAGTTCCTCACAGGAAATCCCAAGATTGATGATGAAAATGCACTGACTCTATGGCACTCTAACTTGAAGCTCCTCCTTGTCACTCTTGGTGAGCATGGTTGCAGATACTACACTAAGAATTTCCGTGGATGTGTTGAAGCTTTCCATGTAACTGCGGTAGATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGCTCGTGAAAATTGTTGATGACCAATCCATTCTTGATGATGAGCCAAGGTTGAGGGAAGTACTCAAATTTGCAAATGCATGTGGAGCAATTACAACAACCAAGAAGGGAGCAATTCCTGCACTTCCCAATGAGTCTGAAGCCCTCGCCCTAATCAAAGGGGCATAG

Protein Analysis

324

Amino Acids

34.77

Weight (kDa)

4.94

Isoelectric Point (pI)

25.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 7 - 311 8.5e-73 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 473
AatII GACGTC 1 cut(s) 237
Acc36I ACCTGC 2 cut(s) 432, 473
AccB1I GGYRCC 2 cut(s) 116, 485
AccBSI CCGCTC 1 cut(s) 278
AccII CGCG 3 cut(s) 140, 300, 315
AciI CCGC 7 cut(s) 83, 123, 140, 156, 165, 276, 764
AclWI GGATC 3 cut(s) 244, 257, 421
AcoI YGGCCR 3 cut(s) 3, 210, 393
AcsI RAATTY 2 cut(s) 727, 872
AcuI CTGAAG 3 cut(s) 377, 384, 963
AcyI GRCGYC 3 cut(s) 72, 117, 234
AfaI GTAC 1 cut(s) 867
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 4 cut(s) 103, 223, 676, 746
AjiI CACGTC 1 cut(s) 583
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 4 cut(s) 221, 253, 596, 628
AluBI AGCT 6 cut(s) 89, 370, 382, 607, 679, 749
AluI AGCT 6 cut(s) 89, 370, 382, 607, 679, 749
Alw21I GWGCWC 3 cut(s) 372, 384, 805
Alw26I GTCTC 2 cut(s) 79, 241
AlwI GGATC 3 cut(s) 244, 257, 421
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 7 cut(s) 3, 63, 105, 210, 282, 393, 527
ApeKI GCWGC 1 cut(s) 352
ApoI RAATTY 2 cut(s) 727, 872
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AsiSI GCGATCGC 1 cut(s) 138
AspLEI GCGC 5 cut(s) 119, 269, 302, 315, 344
AspS9I GGNCC 2 cut(s) 106, 528
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 5 cut(s) 197, 254, 525, 710, 797
AvaI CYCGRG 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 249
BanI GGYRCC 2 cut(s) 116, 485
BanII GRGCYC 2 cut(s) 372, 384
BauI CACGAG 1 cut(s) 809
Bbv12I GWGCWC 3 cut(s) 372, 384, 805
BbvI GCAGC 1 cut(s) 339
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 1 cut(s) 585
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 79, 241
BfoI RGCGCY 2 cut(s) 120, 345
BfuAI ACCTGC 2 cut(s) 432, 473
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 2 cut(s) 165, 353
BlsI GCNGC 2 cut(s) 166, 354
BmcAI AGTACT 1 cut(s) 867
Bme1390I CCNGG 2 cut(s) 93, 111
BmeT110I CYCGRG 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 2 cut(s) 106, 528
BmiI GGNNCC 6 cut(s) 108, 118, 251, 335, 435, 487
BmrFI CCNGG 2 cut(s) 93, 111
BmsI GCATC 1 cut(s) 30
BoxI GACNNNNGTC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 3 cut(s) 72, 117, 234
BsaJI CCNNGG 6 cut(s) 66, 92, 109, 262, 733, 851
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 781
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 6 cut(s) 66, 92, 109, 262, 733, 851
BseGI GGATG 1 cut(s) 743
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 781
BseRI GAGGAG 2 cut(s) 554, 671
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 339
BseYI CCCAGC 1 cut(s) 338
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 3 cut(s) 140, 300, 315
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 7 cut(s) 5, 65, 107, 212, 284, 395, 529
BshNI GGYRCC 2 cut(s) 116, 485
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 3 cut(s) 372, 384, 805
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 4 cut(s) 92, 213, 240, 514
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 2 cut(s) 79, 241
BsmBI CGTCTC 2 cut(s) 79, 241
BsnI GGCC 7 cut(s) 5, 65, 107, 212, 284, 395, 529
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 4 cut(s) 204, 372, 384, 805
Bsp143I GATC 8 cut(s) 21, 45, 135, 249, 389, 413, 426, 585
BspACI CCGC 7 cut(s) 83, 123, 140, 156, 165, 276, 764
BspANI GGCC 7 cut(s) 5, 65, 107, 212, 284, 395, 529
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 3 cut(s) 140, 300, 315
BspLI GGNNCC 6 cut(s) 108, 118, 251, 335, 435, 487
BspMI ACCTGC 2 cut(s) 432, 473
BspPI GGATC 3 cut(s) 244, 257, 421
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 2 cut(s) 116, 485
BsrBI CCGCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 1 cut(s) 781
BssECI CCNNGG 6 cut(s) 66, 92, 109, 262, 733, 851
BssMI GATC 8 cut(s) 21, 45, 135, 249, 389, 413, 426, 585
BssNI GRCGYC 3 cut(s) 72, 117, 234
BssSI CACGAG 1 cut(s) 809
BssT1I CCWWGG 2 cut(s) 262, 851
Bst2BI CACGAG 1 cut(s) 809
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 525
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 3 cut(s) 72, 117, 234
BstAPI GCANNNNNTGC 1 cut(s) 923
BstC8I GCNNGC 5 cut(s) 81, 210, 271, 547, 551
BstDEI CTNAG 2 cut(s) 537, 723
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 1 cut(s) 743
BstFNI CGCG 3 cut(s) 140, 300, 315
BstH2I RGCGCY 2 cut(s) 120, 345
BstHHI GCGC 5 cut(s) 119, 269, 302, 315, 344
BstKTI GATC 8 cut(s) 24, 48, 138, 252, 392, 416, 429, 588
BstMAI GTCTC 2 cut(s) 79, 241
BstMBI GATC 8 cut(s) 21, 45, 135, 249, 389, 413, 426, 585
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 7 cut(s) 131, 275, 358, 367, 479, 890, 923
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 3 cut(s) 208, 549, 888
BstPAI GACNNNNGTC 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 91, 109
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 3 cut(s) 140, 300, 315
BstV1I GCAGC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 7 cut(s) 5, 65, 107, 212, 284, 395, 529
BtgI CCRYGG 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 1 cut(s) 743
BtsIMutI CAGTG 2 cut(s) 521, 650
BveI ACCTGC 2 cut(s) 432, 473
Cac8I GCNNGC 5 cut(s) 81, 210, 271, 547, 551
CfoI GCGC 5 cut(s) 119, 269, 302, 315, 344
Cfr13I GGNCC 2 cut(s) 106, 528
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 866
CviAII CATG 7 cut(s) 205, 322, 438, 546, 704, 755, 885
CviQI GTAC 1 cut(s) 866
DdeI CTNAG 2 cut(s) 537, 723
DinI GGCGCC 1 cut(s) 118
DpnI GATC 8 cut(s) 23, 47, 137, 251, 391, 415, 428, 587
DpnII GATC 8 cut(s) 21, 45, 135, 249, 389, 413, 426, 585
EaeI YGGCCR 3 cut(s) 3, 210, 393
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 2 cut(s) 98, 171
Ecl136II GAGCTC 2 cut(s) 370, 382
Eco130I CCWWGG 2 cut(s) 262, 851
Eco24I GRGCYC 2 cut(s) 372, 384
Eco53kI GAGCTC 2 cut(s) 370, 382
Eco57I CTGAAG 3 cut(s) 377, 384, 963
Eco81I CCTNAGG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 67
EcoICRI GAGCTC 2 cut(s) 370, 382
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 262, 851
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 2 cut(s) 372, 384
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 2 cut(s) 262, 851
Esp3I CGTCTC 2 cut(s) 79, 241
FaeI CATG 7 cut(s) 208, 325, 441, 549, 707, 758, 888
FatI CATG 7 cut(s) 204, 321, 437, 545, 703, 754, 884
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 585
Fnu4HI GCNGC 2 cut(s) 165, 353
FokI GGATG 1 cut(s) 750
FriOI GRGCYC 2 cut(s) 372, 384
Fsp4HI GCNGC 2 cut(s) 165, 353
GlaI GCGC 5 cut(s) 118, 268, 301, 314, 343
GluI GCNGC 2 cut(s) 165, 353
GsaI CCCAGC 1 cut(s) 342
HaeII RGCGCY 2 cut(s) 120, 345
HaeIII GGCC 7 cut(s) 5, 65, 107, 212, 284, 395, 529
HapII CCGG 4 cut(s) 92, 213, 240, 514
HgaI GACGC 1 cut(s) 61
HhaI GCGC 5 cut(s) 119, 269, 302, 315, 344
Hin1I GRCGYC 3 cut(s) 72, 117, 234
Hin1II CATG 7 cut(s) 208, 325, 441, 549, 707, 758, 888
Hin6I GCGC 5 cut(s) 117, 267, 300, 313, 342
HinP1I GCGC 5 cut(s) 117, 267, 300, 313, 342
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 4 cut(s) 216, 655, 788, 938
HpaII CCGG 4 cut(s) 92, 213, 240, 514
HphI GGTGA 5 cut(s) 197, 254, 525, 710, 797
Hpy188I TCNGA 4 cut(s) 21, 333, 389, 943
Hpy188III TCNNGA 5 cut(s) 100, 220, 289, 811, 839
Hpy99I CGWCG 4 cut(s) 64, 194, 236, 308
HpyAV CCTTC 6 cut(s) 97, 178, 217, 239, 295, 904
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 3 cut(s) 129, 234, 582
HpyCH4V TGCA 6 cut(s) 441, 650, 711, 878, 884, 926
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 275, 358, 367, 479, 890, 923
HpyF3I CTNAG 2 cut(s) 537, 723
HpySE526I ACGT 3 cut(s) 129, 234, 582
Hsp92I GRCGYC 3 cut(s) 72, 117, 234
Hsp92II CATG 7 cut(s) 208, 325, 441, 549, 707, 758, 888
HspAI GCGC 5 cut(s) 117, 267, 300, 313, 342
KasI GGCGCC 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 8 cut(s) 21, 45, 135, 249, 389, 413, 426, 585
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 6 cut(s) 94, 433, 604, 684, 890, 914
Lsp1109I GCAGC 1 cut(s) 339
LweI GCATC 1 cut(s) 30
MaeII ACGT 3 cut(s) 129, 234, 582
MaeIII GTNAC 4 cut(s) 185, 289, 688, 757
MalI GATC 8 cut(s) 23, 47, 137, 251, 391, 415, 428, 587
MbiI CCGCTC 1 cut(s) 278
MboI GATC 8 cut(s) 21, 45, 135, 249, 389, 413, 426, 585
MboII GAAGA 1 cut(s) 377
MflI RGATCY 1 cut(s) 249
MhlI GDGCHC 4 cut(s) 204, 372, 384, 805
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 373, 727, 816, 872, 894, 918
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 2 cut(s) 649, 947
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 886
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 92, 213, 240, 514
MspR9I CCNGG 2 cut(s) 93, 111
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 3 cut(s) 140, 300, 315
MwoI GCNNNNNNNGC 7 cut(s) 131, 275, 358, 367, 479, 890, 923
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 1 cut(s) 93
NdeII GATC 8 cut(s) 21, 45, 135, 249, 389, 413, 426, 585
NlaIII CATG 7 cut(s) 208, 325, 441, 549, 707, 758, 888
NlaIV GGNNCC 6 cut(s) 108, 118, 251, 335, 435, 487
NmeAIII GCCGAG 2 cut(s) 127, 132
NmuCI GTSAC 3 cut(s) 185, 289, 688
NsiI ATGCAT 1 cut(s) 886
NspI RCATGY 3 cut(s) 208, 549, 888
PaeI GCATGC 1 cut(s) 549
PaqCI CACCTGC 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 312
PfeI GAWTC 2 cut(s) 216, 788
PkrI GCNGC 2 cut(s) 166, 354
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 2 cut(s) 649, 946
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 2 cut(s) 649, 946
PshAI GACNNNNGTC 1 cut(s) 15
Psp124BI GAGCTC 2 cut(s) 372, 384
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 6 cut(s) 108, 118, 251, 335, 435, 487
PspPI GGNCC 2 cut(s) 106, 528
PsuI RGATCY 1 cut(s) 249
PvuI CGATCG 1 cut(s) 138
RgaI GCGATCGC 1 cut(s) 138
RsaI GTAC 1 cut(s) 867
RsaNI GTAC 1 cut(s) 866
SacI GAGCTC 2 cut(s) 372, 384
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 2 cut(s) 165, 353
Sau3AI GATC 8 cut(s) 21, 45, 135, 249, 389, 413, 426, 585
Sau96I GGNCC 2 cut(s) 106, 528
ScaI AGTACT 1 cut(s) 867
SchI GAGTC 2 cut(s) 649, 947
ScrFI CCNGG 2 cut(s) 93, 111
SduI GDGCHC 4 cut(s) 204, 372, 384, 805
SfaAI GCGATCGC 1 cut(s) 138
SfaNI GCATC 1 cut(s) 30
SfoI GGCGCC 1 cut(s) 118
SgfI GCGATCGC 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SphI GCATGC 1 cut(s) 549
Sse9I AATT 6 cut(s) 373, 727, 816, 872, 894, 918
SsiI CCGC 7 cut(s) 83, 123, 140, 156, 165, 276, 764
SspDI GGCGCC 1 cut(s) 116
SstI GAGCTC 2 cut(s) 372, 384
StyD4I CCNGG 2 cut(s) 91, 109
StyI CCWWGG 2 cut(s) 262, 851
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 3 cut(s) 132, 237, 585
TaqI TCGA 3 cut(s) 48, 258, 378
TasI AATT 6 cut(s) 373, 727, 816, 872, 894, 918
TatI WGTACW 1 cut(s) 865
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 216, 788
TscAI CASTG 2 cut(s) 528, 657
TseFI GTSAC 3 cut(s) 185, 289, 688
TseI GCWGC 1 cut(s) 352
Tsp45I GTSAC 3 cut(s) 185, 289, 688
TspDTI ATGAA 4 cut(s) 160, 310, 657, 780
TspGWI ACGGA 2 cut(s) 321, 722
TspRI CASTG 2 cut(s) 528, 657
XapI RAATTY 2 cut(s) 727, 872
XceI RCATGY 3 cut(s) 208, 549, 888
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 867
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.