Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

55605290 .. 55606156

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCTCATCGACTTCGTCCCCACCGTTTCGGGCGTTTCACTGGCCGAAGCCCCAGCTTTCTTGAAGGCCCCCGGTGGCGCCCCCGCCAACGTGGCGATCGCTGTGGCTCGGCTCGGTGGCAACTCCTCCTTCGTCGGGAAGCTCGGCGACGACGAGTTCGGGCACATGCTCGCCGGAATCTTGAAAGAGAACGGTGTCTCCGGGCAGGGGATCCTGTTCGACCAAAACGCACGCACCGCTCTGGCCTTTGTCACCCTACGCGCTGATGGAGAACGCGAGTTCATGTTTTACCGGAACCCTAGCGCCGATATGCTGCTCAAGCCCGAAGAGCTCAATTTGGAGCTGATCAGATCCGCCAAAGTGTTCCATTATGGATCAATAAGCTTGATCGTTGAGCCATGCAGGTCGGCACAACTGAAGGCAATGGAGGTCGCAAAAGATGCTGGTGCCTTACTTTCCTACGACCCGAACCTCCGACTACCATTGTGGCCTTCACCTGAGGAGGCCCGCGAACAAATAATGAGTATATGGGAAAAGGCAGAAGTGATTAAGGTCAGTGATGTGGAGCTTGAGTTTCTCACAGGAAATCCCAACATTGACGATGAATCTGCGATGACTCTGTGGCACCCTAACTTGAAGCTCCTCCTTGTCACTCTTGGTGAAAAGGGTTGCAGATACTACACTAGGAATTTCCGTGGATGTGTGGAAGCTTTTCATGTAACTGCGGTAGATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGCTCGCAAAGATTGTTGATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGAAGTACTCAAATTCGCAAATGCATGTGGAGCAATAACAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

288

Amino Acids

31.26

Weight (kDa)

4.87

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	2 - 287	5e-67	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AccB1I	GGYRCC	3 cut(s)	77, 446, 624
AccBSI	CCGCTC	1 cut(s)	239
AccII	CGCG	3 cut(s)	261, 276, 510
AciI	CCGC	5 cut(s)	84, 237, 354, 508, 725
AclWI	GGATC	4 cut(s)	205, 218, 345, 382
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	688, 833
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	2 cut(s)	135, 207
AgsI	TTSAA	3 cut(s)	64, 184, 637
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	8 cut(s)	56, 142, 331, 343, 384, 568, 640, 710
AluI	AGCT	8 cut(s)	56, 142, 331, 343, 384, 568, 640, 710
Alw21I	GWGCWC	2 cut(s)	333, 766
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	4 cut(s)	205, 218, 345, 382
AoxI	GGCC	5 cut(s)	42, 66, 243, 488, 504
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	2 cut(s)	688, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AsiSI	GCGATCGC	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	3 cut(s)	80, 263, 305
AspS9I	GGNCC	2 cut(s)	67, 505
AsuC2I	CCSGG	2 cut(s)	72, 202
AsuHPI	GGTGA	4 cut(s)	244, 486, 671, 758
AxyI	CCTNAGG	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	210
BanI	GGYRCC	3 cut(s)	77, 446, 624
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	333, 766
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BclI	TGATCA	1 cut(s)	345
BcnI	CCSGG	2 cut(s)	72, 202
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	300, 684
BfoI	RGCGCY	2 cut(s)	81, 306
BfuAI	ACCTGC	1 cut(s)	393
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
BmcAI	AGTACT	1 cut(s)	828
Bme1390I	CCNGG	2 cut(s)	72, 202
BmgT120I	GGNCC	2 cut(s)	67, 505
BmiI	GGNNCC	6 cut(s)	69, 79, 212, 296, 448, 626
BmrFI	CCNGG	2 cut(s)	72, 202
BmsI	GCATC	1 cut(s)	430
BpuEI	CTTGAG	2 cut(s)	302, 590
BpuMI	CCSGG	2 cut(s)	72, 202
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	70, 694
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 207
Bse1I	ACTGG	2 cut(s)	45, 742
Bse21I	CCTNAGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	70, 694
BseGI	GGATG	1 cut(s)	704
BseLI	CCNNNNNNNGG	2 cut(s)	135, 207
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	45, 742
BseRI	GAGGAG	3 cut(s)	115, 515, 632
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	3 cut(s)	261, 276, 510
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	44, 68, 245, 490, 506
BshNI	GGYRCC	3 cut(s)	77, 446, 624
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	333, 766
BsiSI	CCGG	4 cut(s)	72, 174, 201, 292
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	135, 207
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	5 cut(s)	44, 68, 245, 490, 506
Bsp1286I	GDGCHC	3 cut(s)	165, 333, 766
Bsp143I	GATC	6 cut(s)	96, 210, 345, 350, 374, 387
BspACI	CCGC	5 cut(s)	84, 237, 354, 508, 725
BspANI	GGCC	5 cut(s)	44, 68, 245, 490, 506
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	3 cut(s)	261, 276, 510
BspLI	GGNNCC	6 cut(s)	69, 79, 212, 296, 448, 626
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	4 cut(s)	205, 218, 345, 382
BspQI	GCTCTTC	1 cut(s)	321
BspT107I	GGYRCC	3 cut(s)	77, 446, 624
BsrBI	CCGCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	45, 742
BssECI	CCNNGG	2 cut(s)	70, 694
BssMI	GATC	6 cut(s)	96, 210, 345, 350, 374, 387
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	25, 194
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	171, 232, 508, 771
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	1 cut(s)	704
BstFNI	CGCG	3 cut(s)	261, 276, 510
BstH2I	RGCGCY	2 cut(s)	81, 306
BstHHI	GCGC	3 cut(s)	80, 263, 305
BstKTI	GATC	6 cut(s)	99, 213, 348, 353, 377, 390
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	6 cut(s)	96, 210, 345, 350, 374, 387
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 236, 319, 328, 440, 770, 851
BstNSI	RCATGY	2 cut(s)	169, 849
BstSCI	CCNGG	2 cut(s)	70, 200
BstSLI	GKGCMC	1 cut(s)	165
BstUI	CGCG	3 cut(s)	261, 276, 510
BstV1I	GCAGC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	210, 350
BstYI	RGATCY	2 cut(s)	210, 350
Bsu36I	CCTNAGG	1 cut(s)	498
BsuRI	GGCC	5 cut(s)	44, 68, 245, 490, 506
BtgI	CCRYGG	1 cut(s)	694
BtgZI	GCGATG	1 cut(s)	626
BtsCI	GGATG	1 cut(s)	704
BtsIMutI	CAGTG	2 cut(s)	38, 562
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	4 cut(s)	171, 232, 508, 771
CfoI	GCGC	3 cut(s)	80, 263, 305
Cfr13I	GGNCC	2 cut(s)	67, 505
Csp6I	GTAC	1 cut(s)	827
CviAII	CATG	5 cut(s)	166, 283, 399, 716, 846
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	1 cut(s)	498
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	6 cut(s)	98, 212, 347, 352, 376, 389
DpnII	GATC	6 cut(s)	96, 210, 345, 350, 374, 387
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	437
Eco81I	CCTNAGG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	847
EcoT38I	GRGCYC	1 cut(s)	333
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
FaeI	CATG	5 cut(s)	169, 286, 402, 719, 849
FaiI	YATR	9 cut(s)	167, 284, 311, 372, 400, 527, 529, 717, 847
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	5 cut(s)	165, 282, 398, 715, 845
FauI	CCCGC	2 cut(s)	91, 515
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	711
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	2 cut(s)	300, 684
GlaI	GCGC	3 cut(s)	79, 262, 304
GluI	GCNGC	1 cut(s)	314
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	2 cut(s)	81, 306
HaeIII	GGCC	5 cut(s)	44, 68, 245, 490, 506
HapII	CCGG	4 cut(s)	72, 174, 201, 292
HhaI	GCGC	3 cut(s)	80, 263, 305
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	169, 286, 402, 719, 849
Hin6I	GCGC	3 cut(s)	78, 261, 303
HinP1I	GCGC	3 cut(s)	78, 261, 303
HindIII	AAGCTT	2 cut(s)	382, 708
HinfI	GANTC	4 cut(s)	177, 605, 616, 749
HpaII	CCGG	4 cut(s)	72, 174, 201, 292
HphI	GGTGA	4 cut(s)	244, 486, 671, 758
Hpy188I	TCNGA	2 cut(s)	350, 476
Hpy188III	TCNNGA	4 cut(s)	61, 136, 181, 800
Hpy99I	CGWCG	3 cut(s)	137, 152, 155
HpyAV	CCTTC	4 cut(s)	58, 139, 412, 501
HpyCH4III	ACNGT	2 cut(s)	25, 194
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	402, 672, 845
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 236, 319, 328, 440, 770, 851
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	169, 286, 402, 719, 849
HspAI	GCGC	3 cut(s)	78, 261, 303
KasI	GGCGCC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	6 cut(s)	96, 210, 345, 350, 374, 387
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	4 cut(s)	340, 565, 645, 851
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	300, 684
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	250, 649, 718
MalI	GATC	6 cut(s)	98, 212, 347, 352, 376, 389
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	6 cut(s)	96, 210, 345, 350, 374, 387
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	2 cut(s)	210, 350
MhlI	GDGCHC	3 cut(s)	165, 333, 766
MluCI	AATT	3 cut(s)	334, 688, 833
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	7 cut(s)	136, 421, 482, 493, 496, 653, 813
Mph1103I	ATGCAT	1 cut(s)	847
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	2 cut(s)	549, 865
MspI	CCGG	4 cut(s)	72, 174, 201, 292
MspR9I	CCNGG	2 cut(s)	72, 202
MvnI	CGCG	3 cut(s)	261, 276, 510
MwoI	GCNNNNNNNGC	7 cut(s)	92, 236, 319, 328, 440, 770, 851
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	72, 202
NdeII	GATC	6 cut(s)	96, 210, 345, 350, 374, 387
NlaIII	CATG	5 cut(s)	169, 286, 402, 719, 849
NlaIV	GGNNCC	6 cut(s)	69, 79, 212, 296, 448, 626
NmeAIII	GCCGAG	2 cut(s)	88, 123
NmuCI	GTSAC	2 cut(s)	250, 649
NsiI	ATGCAT	1 cut(s)	847
NspI	RCATGY	2 cut(s)	169, 849
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 150
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	177, 605, 749
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	315
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	610
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	6 cut(s)	69, 79, 212, 296, 448, 626
PspPI	GGNCC	2 cut(s)	67, 505
PsuI	RGATCY	2 cut(s)	210, 350
PsyI	GACNNNGTC	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	99
RgaI	GCGATCGC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	549, 865
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	6 cut(s)	96, 210, 345, 350, 374, 387
Sau96I	GGNCC	2 cut(s)	67, 505
ScaI	AGTACT	1 cut(s)	828
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	2 cut(s)	72, 202
SduI	GDGCHC	3 cut(s)	165, 333, 766
SfaAI	GCGATCGC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	430
SfoI	GGCGCC	1 cut(s)	79
SgfI	GCGATCGC	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	317, 569
SmoI	CTYRAG	2 cut(s)	317, 569
Sse9I	AATT	3 cut(s)	334, 688, 833
SsiI	CCGC	5 cut(s)	84, 237, 354, 508, 725
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	300, 684
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	70, 200
TaaI	ACNGT	2 cut(s)	25, 194
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	9, 219
TasI	AATT	3 cut(s)	334, 688, 833
TatI	WGTACW	1 cut(s)	826
TfiI	GAWTC	3 cut(s)	177, 605, 749
Tru1I	TTAA	2 cut(s)	549, 865
Tru9I	TTAA	2 cut(s)	549, 865
TscAI	CASTG	2 cut(s)	45, 562
TseFI	GTSAC	2 cut(s)	250, 649
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	2 cut(s)	250, 649
TspDTI	ATGAA	4 cut(s)	271, 618, 704, 741
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	2 cut(s)	45, 562
Tth111I	GACNNNGTC	1 cut(s)	14
XapI	RAATTY	2 cut(s)	688, 833
XceI	RCATGY	2 cut(s)	169, 849
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	300, 684
ZrmI	AGTACT	1 cut(s)	828
Zsp2I	ATGCAT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.