Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

23073209 .. 23074923

Gene Structure 1715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0231600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCGTTGGATGTTGCTGAATTCCTGTGGAACAAGTTCTTGAAGTCTCTAGCAGAGATGGAGTCTGAATTAGCAGGTACTATTACCATCCCTTTCTTCGACTCGATAAAAGATCTCATGAAGTGCTTCAACGAAATCAAAGGTGTTATGAATGAGATAGATATCATGCCGGAACCATATACCTACTCTAAAACTATTGATGTGCTCTACAAGCTCAACGATGCATTGGCGGAGTGCCGAGTGTTCACACTTGAGTGCAAGGAACTTAATAAGAATGTGTTAAGCTTCTATGTTCCAAGAATTAGATTTGTTGGAAGGATGAAGACTAAGGTGAAGGATATAGGGGAGCTTCTGAAGCCGGATCCGCAAGAAGAAACTGGCAAATCTCCGGAGATAATCGAACCTGAAGTTTTGTCAAAAGTTTTTGGATTTGATAAGGAAGTTTTTGGATTTGATAAGGAAGCCAAGGAGATTGAGAACCTGCTGGTGGGGGGTGCTAGTTCTAGCAGTACAAGATTTACGGCAATTGGGGTAGTGGGAATTGCTGGTGCGGGTAAGACAACCCTGGTGCAGAAAGTTTTGGAGAGAGAGGGAGTGAAGGAGAGGTTTAGTACTATACTTTGGTTGCCCTTTCATGGTATAAGTGAAGGAGAACAACAATACAGTAAGCTCGGCTTTAAGACATGTATTCTTGACAAGGGGGGCAAATCCCCTGATGAGAAGATTGTTGGCCTGGGGAAGCTCTTGGAAAGGCTGAAGCAACTGTTATCGGGTAAAAGGTATTTGATTGTGTTGGATGATGTGTGTCATCAGCACATTAACATTATGGAACGCTTAGTCAGTGGGTTGCCTAAAGAAAGTGGCGGCGCTGTCATTGTCACTAGCAGATTGAAGGAAGTGGCTCAAAAGAATATTGGAGAACAACAATACCTGATTCCTGTTGAGGCACAGGAAGATATTTGCTCGAAAATAATTGAGGAGACTATACAGAGTGATGAGGGATTGCCAATGACTAAGAAGGAAATGAAGGATCAATGCCATGGTCTACCGTTGGTTGCAGAAACACTAGCACATTTTATTCCTCAAATGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

364

Amino Acids

40.75

Weight (kDa)

5.45

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	173 - 310	2.4e-19	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	65, 489
AccI	GTMKAC	1 cut(s)	1045
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	4 cut(s)	230, 365, 551, 864
AclWI	GGATC	3 cut(s)	356, 369, 1038
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	3 cut(s)	374, 426, 776
AfaI	GTAC	3 cut(s)	79, 511, 613
AfiI	CCNNNNNNNGG	2 cut(s)	487, 635
AflIII	ACRYGT	1 cut(s)	683
AgsI	TTSAA	3 cut(s)	43, 130, 892
AjnI	CCWGG	2 cut(s)	564, 732
AleI	CACNNNNGTG	1 cut(s)	253
AluBI	AGCT	5 cut(s)	214, 285, 349, 670, 742
AluI	AGCT	5 cut(s)	214, 285, 349, 670, 742
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	51, 974
AlwI	GGATC	3 cut(s)	356, 369, 1038
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	1 cut(s)	730
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	2 cut(s)	35, 125
AspLEI	GCGC	1 cut(s)	869
AsuHPI	GGTGA	1 cut(s)	343
BamHI	GGATCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	2 cut(s)	52, 95
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	2 cut(s)	566, 734
BcoDI	GTCTC	2 cut(s)	51, 974
BfaI	CTAG	5 cut(s)	50, 498, 504, 882, 1067
BfoI	RGCGCY	1 cut(s)	870
BfuAI	ACCTGC	2 cut(s)	65, 489
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	1 cut(s)	865
BlsI	GCNGC	1 cut(s)	866
BmcAI	AGTACT	1 cut(s)	613
Bme1390I	CCNGG	2 cut(s)	566, 734
BmiI	GGNNCC	2 cut(s)	174, 363
BmrFI	CCNGG	2 cut(s)	566, 734
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	4 cut(s)	465, 564, 733, 1039
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 635
Bse1I	ACTGG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	566, 734
BseDI	CCNNGG	4 cut(s)	465, 564, 733, 1039
BseGI	GGATG	4 cut(s)	16, 87, 324, 802
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	487, 635
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	992
BsgI	GTGCAG	1 cut(s)	590
BshFI	GGCC	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	170, 359, 389
BslI	CCNNNNNNNGG	2 cut(s)	487, 635
BsmAI	GTCTC	2 cut(s)	51, 974
BsnI	GGCC	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	112, 361, 1030
Bsp19I	CCATGG	1 cut(s)	1039
BspACI	CCGC	4 cut(s)	230, 365, 551, 864
BspANI	GGCC	1 cut(s)	732
BspEI	TCCGGA	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	174, 363
BspMI	ACCTGC	2 cut(s)	65, 489
BspPI	GGATC	3 cut(s)	356, 369, 1038
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	4 cut(s)	465, 564, 733, 1039
BssMI	GATC	3 cut(s)	112, 361, 1030
BssT1I	CCWWGG	2 cut(s)	465, 1039
Bst2UI	CCWGG	2 cut(s)	566, 734
Bst4CI	ACNGT	3 cut(s)	665, 765, 1050
BstDEI	CTNAG	3 cut(s)	327, 835, 1014
BstDSI	CCRYGG	1 cut(s)	1039
BstF5I	GGATG	4 cut(s)	16, 87, 324, 802
BstH2I	RGCGCY	1 cut(s)	870
BstHHI	GCGC	1 cut(s)	869
BstKTI	GATC	3 cut(s)	115, 364, 1033
BstMAI	GTCTC	2 cut(s)	51, 974
BstMBI	GATC	3 cut(s)	112, 361, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 355, 364
BstNI	CCWGG	2 cut(s)	566, 734
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	564, 732
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	2 cut(s)	112, 361
BstYI	RGATCY	2 cut(s)	112, 361
BsuRI	GGCC	1 cut(s)	732
BtgI	CCRYGG	1 cut(s)	1039
BtsCI	GGATG	4 cut(s)	16, 87, 324, 802
BtsIMutI	CAGTG	1 cut(s)	847
BveI	ACCTGC	2 cut(s)	65, 489
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	869
Csp6I	GTAC	3 cut(s)	78, 510, 612
CviAII	CATG	5 cut(s)	118, 166, 635, 684, 1040
CviQI	GTAC	3 cut(s)	78, 510, 612
DdeI	CTNAG	3 cut(s)	327, 835, 1014
DpnI	GATC	3 cut(s)	114, 363, 1032
DpnII	GATC	3 cut(s)	112, 361, 1030
EciI	GGCGGA	1 cut(s)	245
Eco130I	CCWWGG	2 cut(s)	465, 1039
Eco32I	GATATC	1 cut(s)	163
Eco57I	CTGAAG	3 cut(s)	374, 426, 776
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	564, 732
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	465, 1039
EcoT22I	ATGCAT	1 cut(s)	226
ErhI	CCWWGG	2 cut(s)	465, 1039
FaeI	CATG	5 cut(s)	121, 169, 638, 687, 1043
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FatI	CATG	5 cut(s)	117, 165, 634, 683, 1039
FauI	CCCGC	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	1045
Fnu4HI	GCNGC	1 cut(s)	865
FokI	GGATG	4 cut(s)	23, 74, 331, 809
Fsp4HI	GCNGC	1 cut(s)	865
FspBI	CTAG	5 cut(s)	50, 498, 504, 882, 1067
GlaI	GCGC	1 cut(s)	868
GluI	GCNGC	1 cut(s)	865
HaeII	RGCGCY	1 cut(s)	870
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	3 cut(s)	170, 359, 389
HhaI	GCGC	1 cut(s)	869
Hin1II	CATG	5 cut(s)	121, 169, 638, 687, 1043
Hin6I	GCGC	1 cut(s)	867
HinP1I	GCGC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	3 cut(s)	62, 101, 934
HpaII	CCGG	3 cut(s)	170, 359, 389
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	246, 1046
Hpy188I	TCNGA	2 cut(s)	67, 354
Hpy188III	TCNNGA	4 cut(s)	40, 118, 389, 692
Hpy8I	GTNNAC	2 cut(s)	246, 1046
HpyAV	CCTTC	7 cut(s)	309, 328, 592, 641, 886, 1012, 1021
HpyCH4III	ACNGT	3 cut(s)	665, 765, 1050
HpyCH4V	TGCA	4 cut(s)	224, 258, 571, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 355, 364
HpyF3I	CTNAG	3 cut(s)	327, 835, 1014
Hsp92II	CATG	5 cut(s)	121, 169, 638, 687, 1043
HspAI	GCGC	1 cut(s)	867
Kpn2I	TCCGGA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	112, 361, 1030
LmnI	GCTCC	1 cut(s)	346
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	5 cut(s)	50, 498, 504, 882, 1067
MaeIII	GTNAC	1 cut(s)	877
MalI	GATC	3 cut(s)	114, 363, 1032
MboI	GATC	3 cut(s)	112, 361, 1030
MboII	GAAGA	5 cut(s)	88, 334, 383, 733, 965
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	2 cut(s)	112, 361
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	6 cut(s)	20, 68, 300, 525, 540, 972
MlyI	GAGTC	2 cut(s)	71, 95
MmeI	TCCRAC	2 cut(s)	292, 774
MnlI	CCTC	6 cut(s)	583, 597, 937, 970, 991, 1092
Mph1103I	ATGCAT	1 cut(s)	226
MroI	TCCGGA	1 cut(s)	388
MroXI	GAANNNNTTC	2 cut(s)	35, 125
MseI	TTAA	4 cut(s)	267, 281, 678, 819
MslI	CAYNNNNRTG	1 cut(s)	253
MspI	CCGG	3 cut(s)	170, 359, 389
MspR9I	CCNGG	2 cut(s)	566, 734
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	566, 734
MwoI	GCNNNNNNNGC	3 cut(s)	211, 355, 364
NcoI	CCATGG	1 cut(s)	1039
NdeII	GATC	3 cut(s)	112, 361, 1030
NlaIII	CATG	5 cut(s)	121, 169, 638, 687, 1043
NlaIV	GGNNCC	2 cut(s)	174, 363
NmeAIII	GCCGAG	2 cut(s)	263, 651
NmuCI	GTSAC	1 cut(s)	877
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	1 cut(s)	687
OliI	CACNNNNGTG	1 cut(s)	253
PagI	TCATGA	1 cut(s)	117
PciI	ACATGT	1 cut(s)	683
PdmI	GAANNNNTTC	2 cut(s)	35, 125
PfeI	GAWTC	1 cut(s)	934
PkrI	GCNGC	1 cut(s)	866
PleI	GAGTC	2 cut(s)	70, 95
PpsI	GAGTC	2 cut(s)	70, 95
PscI	ACATGT	1 cut(s)	683
Psp6I	CCWGG	2 cut(s)	564, 732
PspGI	CCWGG	2 cut(s)	564, 732
PspN4I	GGNNCC	2 cut(s)	174, 363
PsuI	RGATCY	2 cut(s)	112, 361
RsaI	GTAC	3 cut(s)	79, 511, 613
RsaNI	GTAC	3 cut(s)	78, 510, 612
RseI	CAYNNNNRTG	1 cut(s)	253
SaqAI	TTAA	4 cut(s)	267, 281, 678, 819
SatI	GCNGC	1 cut(s)	865
Sau3AI	GATC	3 cut(s)	112, 361, 1030
ScaI	AGTACT	1 cut(s)	613
SchI	GAGTC	2 cut(s)	71, 95
ScrFI	CCNGG	2 cut(s)	566, 734
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	6 cut(s)	20, 68, 300, 525, 540, 972
SsiI	CCGC	4 cut(s)	230, 365, 551, 864
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	5 cut(s)	50, 498, 504, 882, 1067
StyD4I	CCNGG	2 cut(s)	564, 732
StyI	CCWWGG	2 cut(s)	465, 1039
TaaI	ACNGT	3 cut(s)	665, 765, 1050
TaqI	TCGA	4 cut(s)	99, 104, 399, 965
TasI	AATT	6 cut(s)	20, 68, 300, 525, 540, 972
TatI	WGTACW	2 cut(s)	509, 611
TauI	GCSGC	1 cut(s)	867
TfiI	GAWTC	1 cut(s)	934
Tru1I	TTAA	4 cut(s)	267, 281, 678, 819
Tru9I	TTAA	4 cut(s)	267, 281, 678, 819
TscAI	CASTG	1 cut(s)	847
TseFI	GTSAC	1 cut(s)	877
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	5 cut(s)	134, 164, 335, 623, 1040
TspRI	CASTG	1 cut(s)	847
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	687
XmiI	GTMKAC	1 cut(s)	1045
XmnI	GAANNNNTTC	2 cut(s)	35, 125
XspI	CTAG	5 cut(s)	50, 498, 504, 882, 1067
ZrmI	AGTACT	1 cut(s)	613
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.