Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001422

Physical Location & Seq

Genomic Coordinates Reverse (-)

14889180 .. 14889645

Gene Structure 466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGGTTGCCAAAGAAGCAGGTGCCTTATTGTCCTACGACCCTAACCTCCGGCTACCACTGTGGCCCTCAGCTGAGGAGGCACGCGAGCAGATAATGAGTATATGGGACAAGGCAGAAGTGATCAAAGTCAGTGATGTTGAGCTTGAGTTCCTCACAGGAAATCCCAACATTGATGATGAATCTGCCTTGACTTTTCGTGTAACTGCGGTGGATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGCTTGCAAAGATTGTCGACGACCAGTCTGTTCTTGAAAATGAGCAAAGGTTGAGGGAAGTACTGAAATTTGCAAATGCATGTGGAGCAATTACCACTACAAAGAAGGGAGCCATTCCTGCACTCCCCAACGAGTCTGAAGTCCTCGCCCTAATCAATGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0030054 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0055044 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

139

Amino Acids

14.84

Weight (kDa)

4.35

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	3 - 61	3.1e-06	pfkB family carbohydrate kinase
PfkB	PF00294	66 - 126	2.3e-15	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59480
fragaria_vesca	FvH4_1g23010 FvH4_1g23020 FvH4_4g10860
malus_domestica	MD04G1042400.v1.1
prunus_persica	Prupe.1G196700_v2.0.a1
pyrus_communis	pycom04g03730
rosa_chinensis	RchiOBHm_Chr2g0157021 RchiOBHm_Chr4g0406591 RchiOBHm_Chr5g0068991 RchiOBHm_Chr7g0194531 RchiOBHm_Chr7g0194641 RchiOBHm_Chr7g0194651
rosa_laevigata	RLG00000004186 RLG00000004193 RLG00000008765 RLG00000018591 RLG00000018724 RLG00000036028
rosa_multiflora	Rmu_sc0000853.1_g000003 Rmu_sc0002774.1_g000008 Rmu_sc0010033.1_g000004 Rmu_sc0025697.1_g000002 Rmu_ssc0000261.1_g000007 Rmu_ssc0000261.1_g000008 Rmu_ssc0000261.1_g000019
rosa_roxburghii	Rroxscaffold_1G00011730 Rroxscaffold_3G00261230 Rroxscaffold_3G00261270 Rroxscaffold_5G00351440
rosa_rugosa	Rorug02G0231600 Rorug04G0072300 Rorug05G0395600 Rorug07G0016200 Rorug07G0016500 Rorug07G0214800
rosa_samantha	Rh2AG288300 Rh2DG313400 Rh4BG136500 Rh4CG146600 Rh4DG133800 Rh5BG471200 Rh5CG493700 Rh5DG483900 Rh7AG143700 Rh7BG144300 Rh7BG348300 Rh7DG145600
rosa_wichuraiana	Rw0G006130 Rw2G023990 Rw5G042240 Rw7G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	87
AciI	CCGC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	312
AgsI	TTSAA	1 cut(s)	287
AhdI	GACNNNNNGTC	1 cut(s)	274
AluBI	AGCT	2 cut(s)	74, 145
AluI	AGCT	2 cut(s)	74, 145
Alw21I	GWGCWC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	250
BbvCI	CCTCAGC	2 cut(s)	70, 75
BciVI	GTATCC	1 cut(s)	208
BclI	TGATCA	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	208
BmcAI	AGTACT	1 cut(s)	312
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	25, 361
Bpu10I	CCTNAGC	2 cut(s)	70, 75
BpuEI	CTTGAG	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	226, 274
BseMII	CTCAG	2 cut(s)	66, 84
BseNI	ACTGG	2 cut(s)	226, 274
BseRI	GAGGAG	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	2 cut(s)	67, 83
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	25, 361
BspMI	ACCTGC	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	226, 274
BssMI	GATC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	85, 89, 255
BstDEI	CTNAG	2 cut(s)	70, 75
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 80, 254, 335, 368
BstNSI	RCATGY	1 cut(s)	333
BstUI	CGCG	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	59, 139
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	3 cut(s)	85, 89, 255
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	1 cut(s)	330
CviJI	RGCY	5 cut(s)	55, 67, 74, 145, 362
CviKI_1	RGCY	5 cut(s)	55, 67, 74, 145, 362
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	70, 75
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	331
FaeI	CATG	1 cut(s)	333
FaiI	YATR	4 cut(s)	104, 106, 331, 415
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	1 cut(s)	329
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	182, 233, 383
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4V	TGCA	4 cut(s)	257, 323, 329, 371
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 80, 254, 335, 368
HpyF3I	CTNAG	2 cut(s)	70, 75
Hsp92II	CATG	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	335, 359, 410
LpnPI	CCDG	7 cut(s)	6, 65, 144, 207, 213, 287, 381
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	2 cut(s)	317, 339
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	7 cut(s)	59, 70, 73, 79, 164, 297, 404
Mph1103I	ATGCAT	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	5 cut(s)	17, 80, 254, 335, 368
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	1 cut(s)	333
NlaIV	GGNNCC	2 cut(s)	25, 361
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	333
PaqCI	CACCTGC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	182, 233
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	25, 361
PspPI	GGNCC	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SalI	GTCGAC	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	312
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	6 cut(s)	9, 25, 51, 76, 147, 302
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	317, 339
SsiI	CCGC	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	317, 339
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	182, 233
TscAI	CASTG	2 cut(s)	66, 139
TspDTI	ATGAA	2 cut(s)	195, 225
TspRI	CASTG	2 cut(s)	66, 139
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.