MD04G1042400.v1.1

Belongs to the carbohydrate kinase PfkB family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
5003141 .. 5006860
3720 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1042400.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGCTAACAATGGCGTACCGCAGACCGGAAAGGGTATGATCGTGAGTTTCGGCGAGATGCTGATCGACTTCGTCCCCACCGAATCGGGCGTTTCTCTTGCCGAAGCTCCTGGCTTCCTCAAAGCCCCAGGCGGGGCCCCCGCCAACGTGGCGATCGCCGTGGCTCGCCTCGGCGGAAAGGCCGCGTTCGTCGGAAAACTCGGCGACGACGAGTTCGGCCACATGCTCGCCGGCATCCTGAAGAAATACGGCGTCGCTGGAGAAGGCATCTCGTTCGATCAGGGCGCCCGCACCGCCTTGGCCTTCGTGACCCTACGCGCCGACGGTGAACGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGATATGCTGCTGAAGCCCGACGAGCTCAACATCGAGCTCATCAAATCCGCCAAAGTGTTCCACTATGGATCCATTAGCTTGATCGTGGAGCCGTGCAGATCGGCACATCTGAAGGCAATGGAGGTGGCTAAAGAAGCAGGTGCATTGCTCTCCTACGACCCGAACCTCCGGGAGCCGCTGTGGCCGTCGCGGGAAGAGGCAAAGAAGCAGATAATGAGCATATGGGATAAGGCCGATGTGATCAAGGTGAGTGATGTGGAGCTGGAGTTCCTTACAGGGAGCCCCAAGATTGATGATGCCAATGCCATGACACTGTGGAGAGATAGCTTGAAGCTCCTCCTTGTCACTCTTGGTGAGAAGGGTTGCAGATACTACACCAAGAATTTCCGTGGAGTGGTGGAATCCTTCGAGGTCAAAGCCGTTGACACTACCGGCGCCGGTGATTCGTTTGTCGGTGCTCTCCTTGCGAAGATTGTCGATGACCACTCTATTCTTGAAGACGAGAAGAGGTTGAGGGAGGTACTGAAATTTGCAAATGCATGCGGAGCGATTACAACAACCAAGAAGGGAGCGATCCCCGCACTTCCCAACGAGTCTGAAGCCCTCACCCTCTACAAAGCAAATTAG

Protein Analysis

330

Amino Acids

35.46

Weight (kDa)

5.59

Isoelectric Point (pI)

25.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 13 - 317 4.4e-76 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 491
Acc36I ACCTGC 1 cut(s) 491
AccB1I GGYRCC 2 cut(s) 284, 797
AccII CGCG 3 cut(s) 185, 318, 553
AclWI GGATC 3 cut(s) 426, 439, 931
AcoI YGGCCR 2 cut(s) 217, 545
AcsI RAATTY 2 cut(s) 745, 890
AcuI CTGAAG 4 cut(s) 260, 395, 494, 981
AcyI GRCGYC 3 cut(s) 252, 285, 798
AfaI GTAC 2 cut(s) 18, 885
AfiI CCNNNNNNNGG 4 cut(s) 26, 132, 133, 757
AgsI TTSAA 2 cut(s) 694, 860
AjnI CCWGG 2 cut(s) 109, 127
AloI GAACNNNNNNTCC 2 cut(s) 614, 646
AluBI AGCT 7 cut(s) 107, 388, 400, 441, 625, 690, 697
AluI AGCT 7 cut(s) 107, 388, 400, 441, 625, 690, 697
Alw21I GWGCWC 3 cut(s) 390, 402, 823
AlwI GGATC 3 cut(s) 426, 439, 931
AoxI GGCC 6 cut(s) 135, 180, 217, 300, 545, 594
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 2 cut(s) 745, 890
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsiSI GCGATCGC 1 cut(s) 156
AspLEI GCGC 4 cut(s) 287, 320, 362, 800
AspS9I GGNCC 2 cut(s) 135, 136
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 5 cut(s) 338, 622, 728, 815, 961
BaeGI GKGCMC 1 cut(s) 139
BamHI GGATCC 1 cut(s) 431
BanI GGYRCC 2 cut(s) 284, 797
BanII GRGCYC 4 cut(s) 139, 390, 402, 647
BbsI GAAGAC 1 cut(s) 867
Bbv12I GWGCWC 3 cut(s) 390, 402, 823
BbvI GCAGC 1 cut(s) 357
BceAI ACGGC 5 cut(s) 143, 265, 439, 532, 767
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 2 cut(s) 111, 129
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 1 cut(s) 533
BfaI CTAG 1 cut(s) 357
BfoI RGCGCY 3 cut(s) 288, 363, 801
BfuAI ACCTGC 1 cut(s) 491
BglI GCCNNNNNGGC 2 cut(s) 149, 544
BisI GCNGC 3 cut(s) 183, 371, 539
BlsI GCNGC 3 cut(s) 184, 372, 540
Bme1390I CCNGG 3 cut(s) 111, 129, 533
BmgT120I GGNCC 2 cut(s) 135, 136
BmrFI CCNGG 3 cut(s) 111, 129, 533
BmsI GCATC 4 cut(s) 48, 243, 276, 649
BpiI GAAGAC 1 cut(s) 867
BpmI CTGGAG 2 cut(s) 279, 647
BpuMI CCSGG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 62
BsaHI GRCGYC 3 cut(s) 252, 285, 798
BsaJI CCNNGG 5 cut(s) 127, 159, 169, 297, 751
BsaWI WCCGGW 2 cut(s) 26, 348
BsaXI ACNNNNNCTCC 4 cut(s) 527, 557, 614, 644
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 132, 133, 757
Bse118I RCCGGY 3 cut(s) 230, 794, 800
Bse3DI GCAATG 2 cut(s) 486, 506
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 2 cut(s) 111, 129
BseDI CCNNGG 5 cut(s) 127, 159, 169, 297, 751
BseGI GGATG 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 4 cut(s) 26, 132, 133, 757
BseMI GCAATG 2 cut(s) 486, 506
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 1 cut(s) 357
BsgI GTGCAG 1 cut(s) 478
Bsh1236I CGCG 3 cut(s) 185, 318, 553
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
BshNI GGYRCC 2 cut(s) 284, 797
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 390, 402, 823
BsiSI CCGG 6 cut(s) 27, 231, 349, 532, 795, 801
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 4 cut(s) 26, 132, 133, 757
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 5 cut(s) 139, 390, 402, 647, 823
Bsp143I GATC 9 cut(s) 39, 63, 153, 277, 431, 444, 461, 603, 936
BspANI GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
BspFNI CGCG 3 cut(s) 185, 318, 553
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 3 cut(s) 426, 439, 931
BspT107I GGYRCC 2 cut(s) 284, 797
BsrDI GCAATG 2 cut(s) 486, 506
BsrFI RCCGGY 3 cut(s) 230, 794, 800
BssAI RCCGGY 3 cut(s) 230, 794, 800
BssECI CCNNGG 5 cut(s) 127, 159, 169, 297, 751
BssMI GATC 9 cut(s) 39, 63, 153, 277, 431, 444, 461, 603, 936
BssNI GRCGYC 3 cut(s) 252, 285, 798
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 111, 129
Bst4CI ACNGT 2 cut(s) 326, 678
Bst6I CTCTTC 2 cut(s) 552, 863
BstACI GRCGYC 3 cut(s) 252, 285, 798
BstC8I GCNNGC 5 cut(s) 166, 228, 232, 289, 904
BstDSI CCRYGG 2 cut(s) 159, 751
BstF5I GGATG 1 cut(s) 234
BstFNI CGCG 3 cut(s) 185, 318, 553
BstH2I RGCGCY 3 cut(s) 288, 363, 801
BstHHI GCGC 4 cut(s) 287, 320, 362, 800
BstKTI GATC 9 cut(s) 42, 66, 156, 280, 434, 447, 464, 606, 939
BstMBI GATC 9 cut(s) 39, 63, 153, 277, 431, 444, 461, 603, 936
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 9 cut(s) 149, 293, 376, 385, 497, 544, 827, 908, 941
BstNI CCWGG 2 cut(s) 111, 129
BstNSI RCATGY 2 cut(s) 226, 906
BstSCI CCNGG 3 cut(s) 109, 127, 531
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 3 cut(s) 185, 318, 553
BstV1I GCAGC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 867
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
BtgI CCRYGG 2 cut(s) 159, 751
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 674
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 5 cut(s) 166, 228, 232, 289, 904
CfoI GCGC 4 cut(s) 287, 320, 362, 800
Cfr10I RCCGGY 3 cut(s) 230, 794, 800
Cfr13I GGNCC 2 cut(s) 135, 136
CseI GACGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 17, 884
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 4 cut(s) 223, 340, 670, 903
CviQI GTAC 2 cut(s) 17, 884
DinI GGCGCC 2 cut(s) 286, 799
DpnI GATC 9 cut(s) 41, 65, 155, 279, 433, 446, 463, 605, 938
DpnII GATC 9 cut(s) 39, 63, 153, 277, 431, 444, 461, 603, 936
EaeI YGGCCR 2 cut(s) 217, 545
Eam1104I CTCTTC 2 cut(s) 552, 863
EarI CTCTTC 2 cut(s) 552, 863
EciI GGCGGA 2 cut(s) 189, 400
Ecl136II GAGCTC 2 cut(s) 388, 400
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 4 cut(s) 139, 390, 402, 647
Eco53kI GAGCTC 2 cut(s) 388, 400
Eco57I CTGAAG 4 cut(s) 260, 395, 494, 981
EcoICRI GAGCTC 2 cut(s) 388, 400
EcoO109I RGGNCCY 2 cut(s) 135, 136
EcoRII CCWGG 2 cut(s) 109, 127
EcoT14I CCWWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 904
EcoT38I GRGCYC 4 cut(s) 139, 390, 402, 647
EgeI GGCGCC 2 cut(s) 286, 799
EheI GGCGCC 2 cut(s) 286, 799
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 4 cut(s) 226, 343, 673, 906
FaiI YATR 9 cut(s) 38, 224, 341, 368, 429, 584, 586, 671, 904
FaqI GGGAC 1 cut(s) 59
FatI CATG 4 cut(s) 222, 339, 669, 902
FauI CCCGC 5 cut(s) 125, 148, 296, 546, 949
FauNDI CATATG 1 cut(s) 584
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 3 cut(s) 183, 371, 539
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 4 cut(s) 139, 390, 402, 647
Fsp4HI GCNGC 3 cut(s) 183, 371, 539
FspBI CTAG 1 cut(s) 357
GlaI GCGC 4 cut(s) 286, 319, 361, 799
GluI GCNGC 3 cut(s) 183, 371, 539
GsuI CTGGAG 2 cut(s) 279, 647
HaeII RGCGCY 3 cut(s) 288, 363, 801
HaeIII GGCC 6 cut(s) 137, 182, 219, 302, 547, 596
HapII CCGG 6 cut(s) 27, 231, 349, 532, 795, 801
HgaI GACGC 1 cut(s) 241
HhaI GCGC 4 cut(s) 287, 320, 362, 800
Hin1I GRCGYC 3 cut(s) 252, 285, 798
Hin1II CATG 4 cut(s) 226, 343, 673, 906
Hin6I GCGC 4 cut(s) 285, 318, 360, 798
HinP1I GCGC 4 cut(s) 285, 318, 360, 798
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HinfI GANTC 4 cut(s) 83, 764, 806, 956
HpaII CCGG 6 cut(s) 27, 231, 349, 532, 795, 801
HphI GGTGA 5 cut(s) 338, 622, 728, 815, 961
Hpy166II GTNNAC 2 cut(s) 329, 787
Hpy188I TCNGA 3 cut(s) 194, 474, 961
Hpy188III TCNNGA 4 cut(s) 43, 238, 307, 857
Hpy8I GTNNAC 2 cut(s) 329, 787
Hpy99I CGWCG 7 cut(s) 194, 209, 212, 257, 326, 386, 553
HpyAV CCTTC 6 cut(s) 257, 313, 469, 715, 778, 922
HpyCH4III ACNGT 2 cut(s) 326, 678
HpyCH4IV ACGT 2 cut(s) 147, 331
HpyCH4V TGCA 5 cut(s) 459, 506, 729, 896, 902
HpyF10VI GCNNNNNNNGC 9 cut(s) 149, 293, 376, 385, 497, 544, 827, 908, 941
HpySE526I ACGT 2 cut(s) 147, 331
Hsp92I GRCGYC 3 cut(s) 252, 285, 798
Hsp92II CATG 4 cut(s) 226, 343, 673, 906
HspAI GCGC 4 cut(s) 285, 318, 360, 798
KasI GGCGCC 2 cut(s) 284, 797
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 9 cut(s) 39, 63, 153, 277, 431, 444, 461, 603, 936
LmnI GCTCC 8 cut(s) 112, 451, 535, 622, 642, 702, 908, 932
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 4 cut(s) 48, 243, 276, 649
MaeI CTAG 1 cut(s) 357
MaeII ACGT 2 cut(s) 147, 331
MaeIII GTNAC 2 cut(s) 307, 706
MalI GATC 9 cut(s) 41, 65, 155, 279, 433, 446, 463, 605, 938
MboI GATC 9 cut(s) 39, 63, 153, 277, 431, 444, 461, 603, 936
MboII GAAGA 5 cut(s) 253, 569, 844, 872, 880
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 5 cut(s) 139, 390, 402, 647, 823
MluCI AATT 3 cut(s) 745, 890, 985
Mly113I GGCGCC 2 cut(s) 285, 798
MlyI GAGTC 1 cut(s) 965
MmeI TCCRAC 1 cut(s) 172
Mph1103I ATGCAT 1 cut(s) 904
MroNI GCCGGC 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 6 cut(s) 27, 231, 349, 532, 795, 801
MspR9I CCNGG 3 cut(s) 111, 129, 533
MvaI CCWGG 2 cut(s) 111, 129
MvnI CGCG 3 cut(s) 185, 318, 553
MwoI GCNNNNNNNGC 9 cut(s) 149, 293, 376, 385, 497, 544, 827, 908, 941
NaeI GCCGGC 1 cut(s) 232
NarI GGCGCC 2 cut(s) 285, 798
NciI CCSGG 1 cut(s) 533
NdeI CATATG 1 cut(s) 584
NdeII GATC 9 cut(s) 39, 63, 153, 277, 431, 444, 461, 603, 936
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 4 cut(s) 226, 343, 673, 906
NmeAIII GCCGAG 2 cut(s) 150, 180
NmuCI GTSAC 2 cut(s) 307, 706
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 2 cut(s) 226, 906
PaeI GCATGC 1 cut(s) 906
PaqCI CACCTGC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 207
PdiI GCCGGC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 83, 764, 806
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 3 cut(s) 184, 372, 540
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 1 cut(s) 964
PluTI GGCGCC 2 cut(s) 288, 801
PpsI GAGTC 1 cut(s) 964
Psp124BI GAGCTC 2 cut(s) 390, 402
Psp6I CCWGG 2 cut(s) 109, 127
PspGI CCWGG 2 cut(s) 109, 127
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 135, 136
PsuI RGATCY 1 cut(s) 431
PsyI GACNNNGTC 1 cut(s) 71
PvuI CGATCG 1 cut(s) 156
RgaI GCGATCGC 1 cut(s) 156
RsaI GTAC 2 cut(s) 18, 885
RsaNI GTAC 2 cut(s) 17, 884
SacI GAGCTC 2 cut(s) 390, 402
SatI GCNGC 3 cut(s) 183, 371, 539
Sau3AI GATC 9 cut(s) 39, 63, 153, 277, 431, 444, 461, 603, 936
Sau96I GGNCC 2 cut(s) 135, 136
SchI GAGTC 1 cut(s) 965
ScrFI CCNGG 3 cut(s) 111, 129, 533
SduI GDGCHC 5 cut(s) 139, 390, 402, 647, 823
SfaAI GCGATCGC 1 cut(s) 156
SfaNI GCATC 4 cut(s) 48, 243, 276, 649
SfoI GGCGCC 2 cut(s) 286, 799
SgfI GCGATCGC 1 cut(s) 156
SgrAI CRCCGGYG 1 cut(s) 800
SphI GCATGC 1 cut(s) 906
Sse9I AATT 3 cut(s) 745, 890, 985
SspDI GGCGCC 2 cut(s) 284, 797
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 2 cut(s) 390, 402
StyD4I CCNGG 3 cut(s) 109, 127, 531
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 326, 678
TaiI ACGT 2 cut(s) 150, 334
TaqI TCGA 5 cut(s) 66, 276, 396, 771, 840
TasI AATT 3 cut(s) 745, 890, 985
TauI GCSGC 2 cut(s) 185, 541
TfiI GAWTC 3 cut(s) 83, 764, 806
TscAI CASTG 1 cut(s) 681
TseFI GTSAC 2 cut(s) 307, 706
TseI GCWGC 1 cut(s) 370
Tsp45I GTSAC 2 cut(s) 307, 706
TspDTI ATGAA 1 cut(s) 328
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 1 cut(s) 681
Tth111I GACNNNGTC 1 cut(s) 71
XapI RAATTY 2 cut(s) 745, 890
XceI RCATGY 2 cut(s) 226, 906
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.