Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015183

Physical Location & Seq

Genomic Coordinates Forward (+)

2776407 .. 2780321

Gene Structure 3915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTAAGACCATTCTGGTCACCGGCGGTGCCGGTTACATCGGTAGCCACACCGTGCTGCAGTGCTTGCTCGGCGGCTTCAGCACCGTCGTCGTTGACAATCTCGACAACTCCTCTGAAGTTGCTATCGACCGTGTCCGGGAACTCGCTGGCGATTCTGGCAAAAACCTCAGCTTTCACAAGATTGATCTCAGGGACAAGCCTGCACTGGAAAAGCTCTTTACTTCAACAAAATTTGAAGCTGTCATACATTTTGCTGGGCTGAAAGCAGTTGGTGAAAGTGTTCAGAAACCGTTGCTCTACTATAACAACAATATCGTGGGGACAATTACTCTGTTGGAAGTCATGGCAGCCCATGGTTGCAAAAAGATTGTGTTCTCATCGTCAGCCACTGTCTATGGTTGGCCGAAGGTGGTTCCATGTACCGAGGAGTTCCCTCTTGCTGCTGCAAATCCTTATGGACGAACTAAGCTCTACATTGAAGAAATATGTCGTGATATATACCGCTCAGACTCTGAGTGGAAAATCATATTACTGAGATACTTCAATCCAGTTGGTGCACACCATAGTGGCTATATTGGTGAGGATCCTCATGGGATCCCAAACAATCTCATGCCATTTGTGCAGCAAGTTGCTGTTGGAAGGCGTCCAGCACTGACGGTGTTTGGAAACGACTATAATACCAAAGATGGTACTGGGGTGCGTGATTATGTTCATGTTGATGATTTAGCTCATGGGCACATTGCTGCACTGAAAAAGTTAGACGCAGCTAGTATAGGTTGCGAGGTGTACAATTTAGGAACCGGTAAAGGAACATCAGTCTTGGAGATGGTGGCAGCATTTGAAAAGGCATCTGGAAAGAAAATTCCTCTTGTTATTGCTGGCCGGCGACCTGGGGATGCTGAAGTTGTCTATGCATCAACAGATAAGGCAGAGAGGGAACTGAACTGGAAGGCAAAATATAACATTGATGACATGTGCCGGGATCAGTGGAATTGGGCTAGCAAGAACCCATATGGCTATGCAGCTCATGCCAATAGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0022622 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

349

Amino Acids

38.06

Weight (kDa)

6.83

Isoelectric Point (pI)

24.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	4 - 166	1.1e-08	RmlD substrate binding domain
Epimerase	PF01370	5 - 267	1.2e-55	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	5 - 187	1.8e-13	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	6 - 329	2.2e-65	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	6 - 135	2.6e-12	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64440 AT4G10960 AT4G23920
fragaria_vesca	FvH4_5g04740
malus_domestica	MD06G1108600.v1.1 MD14G1129500.v1.1
prunus_persica	Prupe.5G121200_v2.0.a1
pyrus_communis	pycom06g10200
rosa_chinensis	RchiOBHm_Chr7g0194661
rosa_laevigata	RLG00000004185
rosa_multiflora	Rmu_sc0008345.1_g000004 Rmu_sc0010033.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261220
rosa_rugosa	Rorug07G0016500
rosa_samantha	Rh7BG144400
rosa_wichuraiana	Rw7G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	507
AciI	CCGC	3 cut(s)	27, 75, 505
AclWI	GGATC	5 cut(s)	581, 592, 594, 605, 993
AcoI	YGGCCR	2 cut(s)	404, 883
AcsI	RAATTY	2 cut(s)	233, 864
AcuI	CTGAAG	3 cut(s)	64, 138, 924
AcyI	GRCGYC	1 cut(s)	646
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	3 cut(s)	424, 694, 791
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	975
AgeI	ACCGGT	1 cut(s)	803
AgsI	TTSAA	5 cut(s)	228, 239, 482, 547, 845
AjnI	CCWGG	1 cut(s)	892
AleI	CACNNNNGTG	1 cut(s)	567
AluBI	AGCT	7 cut(s)	174, 217, 242, 472, 731, 770, 1028
AluI	AGCT	7 cut(s)	174, 217, 242, 472, 731, 770, 1028
Alw21I	GWGCWC	1 cut(s)	562
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	5 cut(s)	581, 592, 594, 605, 993
AlwNI	CAGNNNCTG	2 cut(s)	392, 515
AoxI	GGCC	2 cut(s)	404, 883
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	9 cut(s)	58, 350, 443, 446, 625, 746, 767, 836, 1025
ApoI	RAATTY	2 cut(s)	233, 864
AsiGI	ACCGGT	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	282
AsuC2I	CCSGG	2 cut(s)	140, 983
AsuHPI	GGTGA	3 cut(s)	13, 287, 593
AsuNHI	GCTAGC	1 cut(s)	1001
BaeGI	GKGCMC	2 cut(s)	562, 741
BaeI	ACNNNNGTAYC	2 cut(s)	684, 717
BamHI	GGATCC	2 cut(s)	586, 597
BanI	GGYRCC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
Bbv12I	GWGCWC	1 cut(s)	562
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	9 cut(s)	45, 362, 430, 433, 637, 733, 779, 848, 1037
BccI	CCATC	2 cut(s)	683, 823
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	1 cut(s)	894
BcnI	CCSGG	2 cut(s)	140, 983
BfaI	CTAG	2 cut(s)	771, 1002
BfmI	CTRYAG	1 cut(s)	59
Bme1390I	CCNGG	3 cut(s)	140, 894, 983
BmiI	GGNNCC	5 cut(s)	31, 417, 588, 599, 802
BmrFI	CCNGG	3 cut(s)	140, 894, 983
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	3 cut(s)	860, 889, 926
BmtI	GCTAGC	1 cut(s)	1005
BmuI	ACTGGG	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	170
BpuMI	CCSGG	2 cut(s)	140, 983
BsaHI	GRCGYC	1 cut(s)	646
BsaJI	CCNNGG	3 cut(s)	355, 426, 893
BsaWI	WCCGGW	1 cut(s)	803
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse118I	RCCGGY	4 cut(s)	23, 32, 803, 885
Bse1I	ACTGG	4 cut(s)	213, 551, 700, 953
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	3 cut(s)	355, 426, 893
BseGI	GGATG	1 cut(s)	904
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	5 cut(s)	184, 205, 507, 522, 527
BseNI	ACTGG	4 cut(s)	213, 551, 700, 953
BseRI	GAGGAG	2 cut(s)	103, 443
BseSI	GKGCMC	2 cut(s)	562, 741
BseXI	GCAGC	9 cut(s)	45, 362, 430, 433, 637, 733, 779, 848, 1037
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	3 cut(s)	189, 644, 732
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	406, 885
BshNI	GGYRCC	1 cut(s)	29
BshTI	ACCGGT	1 cut(s)	803
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	6 cut(s)	24, 33, 139, 804, 886, 982
BslFI	GGGAC	2 cut(s)	209, 337
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	2 cut(s)	209, 337
BsnI	GGCC	2 cut(s)	406, 885
Bsp1286I	GDGCHC	2 cut(s)	562, 741
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	4 cut(s)	187, 586, 597, 985
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	3 cut(s)	27, 75, 505
BspANI	GGCC	2 cut(s)	406, 885
BspCNI	CTCAG	5 cut(s)	183, 204, 508, 521, 528
BspLI	GGNNCC	5 cut(s)	31, 417, 588, 599, 802
BspMAI	CTGCAG	1 cut(s)	63
BspOI	GCTAGC	1 cut(s)	1005
BspPI	GGATC	5 cut(s)	581, 592, 594, 605, 993
BspT107I	GGYRCC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	4 cut(s)	23, 32, 803, 885
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	4 cut(s)	213, 551, 700, 953
BssAI	RCCGGY	4 cut(s)	23, 32, 803, 885
BssECI	CCNNGG	3 cut(s)	355, 426, 893
BssMI	GATC	4 cut(s)	187, 586, 597, 985
BssNI	GRCGYC	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	6 cut(s)	55, 88, 134, 294, 394, 661
BstACI	GRCGYC	1 cut(s)	646
BstAPI	GCANNNNNTGC	2 cut(s)	67, 1031
BstAUI	TGTACA	1 cut(s)	789
BstC8I	GCNNGC	6 cut(s)	68, 151, 204, 883, 887, 1003
BstDEI	CTNAG	6 cut(s)	170, 191, 468, 508, 516, 536
BstDSI	CCRYGG	1 cut(s)	355
BstEII	GGTNACC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	904
BstKTI	GATC	4 cut(s)	190, 589, 600, 988
BstMBI	GATC	4 cut(s)	187, 586, 597, 985
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 72, 81, 159, 622, 1031
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	979
BstPI	GGTNACC	1 cut(s)	19
BstSCI	CCNGG	3 cut(s)	138, 892, 981
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	2 cut(s)	562, 741
BstV1I	GCAGC	9 cut(s)	45, 362, 430, 433, 637, 733, 779, 848, 1037
BstX2I	RGATCY	2 cut(s)	586, 597
BstYI	RGATCY	2 cut(s)	586, 597
BsuRI	GGCC	2 cut(s)	406, 885
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	904
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	6 cut(s)	68, 206, 390, 653, 749, 995
Cac8I	GCNNGC	6 cut(s)	68, 151, 204, 883, 887, 1003
CaiI	CAGNNNCTG	2 cut(s)	392, 515
Cfr10I	RCCGGY	4 cut(s)	23, 32, 803, 885
CseI	GACGC	2 cut(s)	635, 773
Csp6I	GTAC	3 cut(s)	423, 693, 790
CspAI	ACCGGT	1 cut(s)	803
CviAII	CATG	9 cut(s)	346, 356, 420, 593, 613, 716, 734, 976, 1031
CviQI	GTAC	3 cut(s)	423, 693, 790
DdeI	CTNAG	6 cut(s)	170, 191, 468, 508, 516, 536
DpnI	GATC	4 cut(s)	189, 588, 599, 987
DpnII	GATC	4 cut(s)	187, 586, 597, 985
DraIII	CACNNNGTG	1 cut(s)	55
EaeI	YGGCCR	2 cut(s)	404, 883
Eco130I	CCWWGG	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	64, 138, 924
Eco91I	GGTNACC	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	9 cut(s)	349, 359, 423, 596, 616, 719, 737, 979, 1034
FaqI	GGGAC	2 cut(s)	209, 337
FatI	CATG	9 cut(s)	345, 355, 419, 592, 612, 715, 733, 975, 1030
FauNDI	CATATG	1 cut(s)	1015
FokI	GGATG	1 cut(s)	911
FspBI	CTAG	2 cut(s)	771, 1002
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	406, 885
HapII	CCGG	6 cut(s)	24, 33, 139, 804, 886, 982
HgaI	GACGC	2 cut(s)	635, 773
Hin1I	GRCGYC	1 cut(s)	646
Hin1II	CATG	9 cut(s)	349, 359, 423, 596, 616, 719, 737, 979, 1034
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	155, 512
HpaII	CCGG	6 cut(s)	24, 33, 139, 804, 886, 982
HphI	GGTGA	3 cut(s)	13, 287, 593
Hpy166II	GTNNAC	3 cut(s)	97, 560, 790
Hpy188I	TCNGA	4 cut(s)	118, 288, 511, 517
Hpy188III	TCNNGA	3 cut(s)	104, 494, 855
Hpy8I	GTNNAC	3 cut(s)	97, 560, 790
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	3 cut(s)	403, 636, 946
HpyCH4III	ACNGT	6 cut(s)	55, 88, 134, 294, 394, 661
HpyCH4V	TGCA	9 cut(s)	61, 206, 363, 449, 560, 625, 749, 917, 1025
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 72, 81, 159, 622, 1031
HpyF3I	CTNAG	6 cut(s)	170, 191, 468, 508, 516, 536
Hsp92I	GRCGYC	1 cut(s)	646
Hsp92II	CATG	9 cut(s)	349, 359, 423, 596, 616, 719, 737, 979, 1034
KroI	GCCGGC	1 cut(s)	885
KroNI	GCCGGC	1 cut(s)	887
Kzo9I	GATC	4 cut(s)	187, 586, 597, 985
Lsp1109I	GCAGC	9 cut(s)	45, 362, 430, 433, 637, 733, 779, 848, 1037
LweI	GCATC	3 cut(s)	860, 889, 926
MaeI	CTAG	2 cut(s)	771, 1002
MaeIII	GTNAC	2 cut(s)	19, 35
MalI	GATC	4 cut(s)	189, 588, 599, 987
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	4 cut(s)	187, 586, 597, 985
MboII	GAAGA	1 cut(s)	494
MflI	RGATCY	2 cut(s)	586, 597
MhlI	GDGCHC	2 cut(s)	562, 741
MluCI	AATT	5 cut(s)	233, 327, 793, 864, 994
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	318, 619
MnlI	CCTC	9 cut(s)	124, 179, 421, 447, 577, 600, 778, 879, 930
Mph1103I	ATGCAT	1 cut(s)	919
MroNI	GCCGGC	1 cut(s)	885
MroXI	GAANNNNTTC	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	567, 720
MspI	CCGG	6 cut(s)	24, 33, 139, 804, 886, 982
MspR9I	CCNGG	3 cut(s)	140, 894, 983
MvaI	CCWGG	1 cut(s)	894
MwoI	GCNNNNNNNGC	6 cut(s)	67, 72, 81, 159, 622, 1031
NaeI	GCCGGC	1 cut(s)	887
NciI	CCSGG	2 cut(s)	140, 983
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	4 cut(s)	187, 586, 597, 985
NgoMIV	GCCGGC	1 cut(s)	885
NheI	GCTAGC	1 cut(s)	1001
NlaIII	CATG	9 cut(s)	349, 359, 423, 596, 616, 719, 737, 979, 1034
NlaIV	GGNNCC	5 cut(s)	31, 417, 588, 599, 802
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	1 cut(s)	979
OliI	CACNNNNGTG	1 cut(s)	567
PciI	ACATGT	1 cut(s)	975
PdiI	GCCGGC	1 cut(s)	887
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	138
PinAI	ACCGGT	1 cut(s)	803
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PscI	ACATGT	1 cut(s)	975
Psp6I	CCWGG	1 cut(s)	892
PspEI	GGTNACC	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	5 cut(s)	31, 417, 588, 599, 802
PstI	CTGCAG	1 cut(s)	63
PstNI	CAGNNNCTG	2 cut(s)	392, 515
PsuI	RGATCY	2 cut(s)	586, 597
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	3 cut(s)	424, 694, 791
RsaNI	GTAC	3 cut(s)	423, 693, 790
RseI	CAYNNNNRTG	2 cut(s)	567, 720
Sau3AI	GATC	4 cut(s)	187, 586, 597, 985
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	140, 894, 983
SduI	GDGCHC	2 cut(s)	562, 741
SfaNI	GCATC	3 cut(s)	860, 889, 926
SfcI	CTRYAG	1 cut(s)	59
SgrAI	CRCCGGYG	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	567, 720
Sse9I	AATT	5 cut(s)	233, 327, 793, 864, 994
SsiI	CCGC	3 cut(s)	27, 75, 505
SspMI	CTAG	2 cut(s)	771, 1002
StyD4I	CCNGG	3 cut(s)	138, 892, 981
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	6 cut(s)	55, 88, 134, 294, 394, 661
TaqI	TCGA	2 cut(s)	105, 129
TasI	AATT	5 cut(s)	233, 327, 793, 864, 994
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	155
TscAI	CASTG	6 cut(s)	68, 213, 397, 660, 756, 995
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	9 cut(s)	58, 350, 443, 446, 625, 746, 767, 836, 1025
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	704
TspRI	CASTG	6 cut(s)	68, 213, 397, 660, 756, 995
Tth111I	GACNNNGTC	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	558
XapI	RAATTY	2 cut(s)	233, 864
XceI	RCATGY	1 cut(s)	979
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	771, 1002
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.