Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015183

Physical Location & Seq

Genomic Coordinates Forward (+)

12076014 .. 12080247

Gene Structure 4234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G121200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCAAGACCATACTGGTCACCGGCGGGGCCGGTTATATCGGCAGTCACACCGTGCTTCAGCTTCTGCTCGGCGGCTTTAAGACCGTCGTCGTTGACAACCTTGATAACTCCTCCGAAGTCGCCGTCAACCGTGTCAGAGAACTCGCGCGTGAATTCGGCAAAAACCTCTCCTTTCACAAGGTGGACCTCCGGGACAAACCAGCACTGGATAAACTCTTTTCTTCAATACCATTTGATGCTGTCATACACTTTGCTGGACTCAAAGCAGTTGGTGAAAGTGTGCAGAAACCATTGCTGTATTATAACAACAATTTAATCGGGACGATTACTCTGTTGGAAGTAATGGCTGCCCATGGATGCAAAAAGCTTGTGTTCTCATCGTCAGCAACTGTTTATGGTTGGCCGAAGGTGGTCCCATGTACAGAAGATTTCCCACTTGTTGCAGCGAATCCATATGGACGAACTAAGCTTTTCATTGAAGAAATTGCTCGTGATGTTTACTGCTCAGACTCTGATTGGAAAATCATATTGCTGAGATACTTCAATCCAGTTGGTGCACATCCTAGCGGTCATATTGGTGAGGATCCCCGTGGTATCCCAAACAATCTCATGCCGTTTGTGCAGCAAGTTGCTGTTGGCAGGCGTCAAGCCCTGACGGTGTTTGGAACTGACTATAATACCAAGGATGGTACTGGGGTTCGTGATTATATTCATGTAGTTGATTTAGCAGATGGGCACATTGCTGCCTTGCAGAAGTTAGATGAGGATAACATAGGTTGCGAGGTGTACAATTTAGGAACAGGTAAAGGAACATCGGTCTTAGAGATGGTTGCAGCATTTGAAAGTGCATCTGGAAAGAAAATTCCTCTTGTCACATCTGGGAGGCGTCCCGGTGATGCAGAAGTTGTCTATGCATCAACAGAAAAGGCAGAGAGGGAACTCAACTGGAAGGCGCAATATAGCATTGATGACATGTGCCGGGACCAGTGGAACTGGGCTAGCAAAAATCCATTTGGCTATGATACCTCAGAATCTACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0022622 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

349

Amino Acids

38.18

Weight (kDa)

5.93

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64440 AT4G10960 AT4G23920
fragaria_vesca	FvH4_5g04740
malus_domestica	MD06G1108600.v1.1 MD14G1129500.v1.1
prunus_persica	Prupe.5G121200_v2.0.a1
pyrus_communis	pycom06g10200
rosa_chinensis	RchiOBHm_Chr7g0194661
rosa_laevigata	RLG00000004185
rosa_multiflora	Rmu_sc0008345.1_g000004 Rmu_sc0010033.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261220
rosa_rugosa	Rorug07G0016500
rosa_samantha	Rh7BG144400
rosa_wichuraiana	Rw7G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccII	CGCG	2 cut(s)	149, 151
AciI	CCGC	3 cut(s)	27, 75, 570
AclWI	GGATC	2 cut(s)	581, 594
AcoI	YGGCCR	2 cut(s)	3, 404
AcsI	RAATTY	2 cut(s)	155, 864
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	2 cut(s)	646, 889
AdeI	CACNNNGTG	2 cut(s)	55, 184
AfaI	GTAC	3 cut(s)	424, 694, 791
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	4 cut(s)	228, 482, 547, 845
AluBI	AGCT	3 cut(s)	64, 370, 472
AluI	AGCT	3 cut(s)	64, 370, 472
Alw21I	GWGCWC	1 cut(s)	562
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	2 cut(s)	581, 594
AlwNI	CAGNNNCTG	3 cut(s)	67, 392, 515
AoxI	GGCC	3 cut(s)	3, 30, 404
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	5 cut(s)	350, 446, 625, 746, 836
ApoI	RAATTY	2 cut(s)	155, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	2 cut(s)	151, 958
AspS9I	GGNCC	4 cut(s)	30, 187, 415, 985
AsuC2I	CCSGG	3 cut(s)	194, 894, 983
AsuHPI	GGTGA	4 cut(s)	13, 287, 593, 908
AsuNHI	GCTAGC	1 cut(s)	1001
AvaII	GGWCC	3 cut(s)	187, 415, 985
BaeGI	GKGCMC	2 cut(s)	562, 741
BaeI	ACNNNNGTAYC	2 cut(s)	684, 717
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	586
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	5 cut(s)	337, 458, 637, 733, 848
BccI	CCATC	3 cut(s)	683, 728, 823
BceAI	ACGGC	2 cut(s)	110, 601
BciVI	GTATCC	1 cut(s)	608
BcnI	CCSGG	3 cut(s)	194, 894, 983
BfaI	CTAG	2 cut(s)	567, 1002
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	6 cut(s)	76, 351, 447, 626, 747, 837
BlsI	GCNGC	6 cut(s)	77, 352, 448, 627, 748, 838
Bme1390I	CCNGG	3 cut(s)	194, 894, 983
Bme18I	GGWCC	3 cut(s)	187, 415, 985
BmgT120I	GGNCC	4 cut(s)	30, 187, 415, 985
BmiI	GGNNCC	4 cut(s)	31, 417, 588, 986
BmrFI	CCNGG	3 cut(s)	194, 894, 983
BmrI	ACTGGG	2 cut(s)	705, 1006
BmsI	GCATC	5 cut(s)	229, 350, 860, 889, 926
BmtI	GCTAGC	1 cut(s)	1005
BmuI	ACTGGG	2 cut(s)	705, 1006
BoxI	GACNNNNGTC	1 cut(s)	89
BpuMI	CCSGG	3 cut(s)	194, 894, 983
BsaHI	GRCGYC	2 cut(s)	646, 889
BsaJI	CCNNGG	3 cut(s)	355, 592, 684
Bse118I	RCCGGY	2 cut(s)	23, 32
Bse1I	ACTGG	7 cut(s)	21, 213, 551, 700, 953, 988, 1001
Bse3DI	GCAATG	2 cut(s)	293, 741
BseDI	CCNNGG	3 cut(s)	355, 592, 684
BseGI	GGATG	3 cut(s)	365, 562, 694
BseMI	GCAATG	2 cut(s)	293, 741
BseMII	CTCAG	3 cut(s)	522, 527, 1044
BseNI	ACTGG	7 cut(s)	21, 213, 551, 700, 953, 988, 1001
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	2 cut(s)	562, 741
BseXI	GCAGC	5 cut(s)	337, 458, 637, 733, 848
BsgI	GTGCAG	2 cut(s)	305, 644
Bsh1236I	CGCG	2 cut(s)	149, 151
BshFI	GGCC	3 cut(s)	5, 32, 406
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	5 cut(s)	24, 33, 193, 894, 982
BslFI	GGGAC	5 cut(s)	209, 337, 401, 876, 998
BsmFI	GGGAC	5 cut(s)	209, 337, 401, 876, 998
BsnI	GGCC	3 cut(s)	5, 32, 406
Bsp1286I	GDGCHC	2 cut(s)	562, 741
Bsp1407I	TGTACA	2 cut(s)	422, 789
Bsp143I	GATC	1 cut(s)	586
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	3 cut(s)	27, 75, 570
BspANI	GGCC	3 cut(s)	5, 32, 406
BspCNI	CTCAG	3 cut(s)	521, 528, 1043
BspFNI	CGCG	2 cut(s)	149, 151
BspLI	GGNNCC	4 cut(s)	31, 417, 588, 986
BspOI	GCTAGC	1 cut(s)	1005
BspPI	GGATC	2 cut(s)	581, 594
BsrDI	GCAATG	2 cut(s)	293, 741
BsrFI	RCCGGY	2 cut(s)	23, 32
BsrGI	TGTACA	2 cut(s)	422, 789
BsrI	ACTGG	7 cut(s)	21, 213, 551, 700, 953, 988, 1001
BssAI	RCCGGY	2 cut(s)	23, 32
BssECI	CCNNGG	3 cut(s)	355, 592, 684
BssMI	GATC	1 cut(s)	586
BssNI	GRCGYC	2 cut(s)	646, 889
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	2 cut(s)	355, 684
Bst2BI	CACGAG	1 cut(s)	492
Bst4CI	ACNGT	5 cut(s)	55, 88, 134, 394, 661
BstACI	GRCGYC	2 cut(s)	646, 889
BstAUI	TGTACA	2 cut(s)	422, 789
BstC8I	GCNNGC	2 cut(s)	644, 1003
BstDEI	CTNAG	5 cut(s)	468, 508, 536, 823, 1030
BstDSI	CCRYGG	2 cut(s)	355, 592
BstEII	GGTNACC	1 cut(s)	19
BstF5I	GGATG	3 cut(s)	365, 562, 694
BstFNI	CGCG	2 cut(s)	149, 151
BstHHI	GCGC	2 cut(s)	151, 958
BstKTI	GATC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	1 cut(s)	622
BstNSI	RCATGY	1 cut(s)	979
BstPAI	GACNNNNGTC	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	19
BstSCI	CCNGG	3 cut(s)	192, 892, 981
BstSLI	GKGCMC	2 cut(s)	562, 741
BstUI	CGCG	2 cut(s)	149, 151
BstV1I	GCAGC	5 cut(s)	337, 458, 637, 733, 848
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	3 cut(s)	5, 32, 406
BtgI	CCRYGG	2 cut(s)	355, 592
BtsCI	GGATG	3 cut(s)	365, 562, 694
BtsIMutI	CAGTG	2 cut(s)	206, 995
Cac8I	GCNNGC	2 cut(s)	644, 1003
CaiI	CAGNNNCTG	3 cut(s)	67, 392, 515
CfoI	GCGC	2 cut(s)	151, 958
Cfr10I	RCCGGY	2 cut(s)	23, 32
Cfr13I	GGNCC	4 cut(s)	30, 187, 415, 985
CseI	GACGC	2 cut(s)	635, 878
Csp6I	GTAC	3 cut(s)	423, 693, 790
CviAII	CATG	5 cut(s)	356, 420, 613, 716, 976
CviQI	GTAC	3 cut(s)	423, 693, 790
DdeI	CTNAG	5 cut(s)	468, 508, 536, 823, 1030
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
DraIII	CACNNNGTG	2 cut(s)	55, 184
EaeI	YGGCCR	2 cut(s)	3, 404
Eco130I	CCWWGG	2 cut(s)	355, 684
Eco47I	GGWCC	3 cut(s)	187, 415, 985
Eco57I	CTGAAG	1 cut(s)	44
Eco91I	GGTNACC	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	355, 684
EcoT22I	ATGCAT	1 cut(s)	919
ErhI	CCWWGG	2 cut(s)	355, 684
FaeI	CATG	5 cut(s)	359, 423, 616, 719, 979
FaqI	GGGAC	5 cut(s)	209, 337, 401, 876, 998
FatI	CATG	5 cut(s)	355, 419, 612, 715, 975
FauI	CCCGC	1 cut(s)	20
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	6 cut(s)	76, 351, 447, 626, 747, 837
FokI	GGATG	3 cut(s)	372, 549, 701
Fsp4HI	GCNGC	6 cut(s)	76, 351, 447, 626, 747, 837
FspBI	CTAG	2 cut(s)	567, 1002
GlaI	GCGC	2 cut(s)	150, 957
GluI	GCNGC	6 cut(s)	76, 351, 447, 626, 747, 837
HaeIII	GGCC	3 cut(s)	5, 32, 406
HapII	CCGG	5 cut(s)	24, 33, 193, 894, 982
HgaI	GACGC	2 cut(s)	635, 878
HhaI	GCGC	2 cut(s)	151, 958
Hin1I	GRCGYC	2 cut(s)	646, 889
Hin1II	CATG	5 cut(s)	359, 423, 616, 719, 979
Hin6I	GCGC	2 cut(s)	149, 956
HinP1I	GCGC	2 cut(s)	149, 956
HincII	GTYRAC	2 cut(s)	97, 130
HindII	GTYRAC	2 cut(s)	97, 130
HindIII	AAGCTT	2 cut(s)	368, 470
HinfI	GANTC	4 cut(s)	261, 451, 512, 1034
HpaII	CCGG	5 cut(s)	24, 33, 193, 894, 982
HphI	GGTGA	4 cut(s)	13, 287, 593, 908
Hpy166II	GTNNAC	6 cut(s)	97, 130, 187, 502, 560, 790
Hpy188I	TCNGA	5 cut(s)	118, 140, 511, 517, 1033
Hpy188III	TCNNGA	4 cut(s)	322, 494, 704, 855
Hpy8I	GTNNAC	6 cut(s)	97, 130, 187, 502, 560, 790
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	2 cut(s)	403, 946
HpyCH4III	ACNGT	5 cut(s)	55, 88, 134, 394, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	622
HpyF3I	CTNAG	5 cut(s)	468, 508, 536, 823, 1030
Hsp92I	GRCGYC	2 cut(s)	646, 889
Hsp92II	CATG	5 cut(s)	359, 423, 616, 719, 979
HspAI	GCGC	2 cut(s)	149, 956
Kzo9I	GATC	1 cut(s)	586
Lsp1109I	GCAGC	5 cut(s)	337, 458, 637, 733, 848
LweI	GCATC	5 cut(s)	229, 350, 860, 889, 926
MaeI	CTAG	2 cut(s)	567, 1002
MaeIII	GTNAC	3 cut(s)	19, 47, 874
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	3 cut(s)	216, 440, 494
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	2 cut(s)	562, 741
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	155, 313, 486, 793, 864
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	255, 506
MmeI	TCCRAC	1 cut(s)	318
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	919
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	81, 317
MslI	CAYNNNNRTG	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	24, 33, 193, 894, 982
MspR9I	CCNGG	3 cut(s)	194, 894, 983
MvnI	CGCG	2 cut(s)	149, 151
MwoI	GCNNNNNNNGC	1 cut(s)	622
NciI	CCSGG	3 cut(s)	194, 894, 983
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	1 cut(s)	586
NheI	GCTAGC	1 cut(s)	1001
NlaIII	CATG	5 cut(s)	359, 423, 616, 719, 979
NlaIV	GGNNCC	4 cut(s)	31, 417, 588, 986
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	3 cut(s)	19, 47, 874
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	1 cut(s)	979
PciI	ACATGT	1 cut(s)	975
PfeI	GAWTC	2 cut(s)	451, 1034
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	6 cut(s)	77, 352, 448, 627, 748, 838
PleI	GAGTC	2 cut(s)	255, 506
PpsI	GAGTC	2 cut(s)	255, 506
PscI	ACATGT	1 cut(s)	975
PshAI	GACNNNNGTC	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	306
PspEI	GGTNACC	1 cut(s)	19
PspN4I	GGNNCC	4 cut(s)	31, 417, 588, 986
PspPI	GGNCC	4 cut(s)	30, 187, 415, 985
PstNI	CAGNNNCTG	3 cut(s)	67, 392, 515
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	3 cut(s)	424, 694, 791
RsaNI	GTAC	3 cut(s)	423, 693, 790
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	81, 317
SatI	GCNGC	6 cut(s)	76, 351, 447, 626, 747, 837
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	4 cut(s)	30, 187, 415, 985
SchI	GAGTC	2 cut(s)	255, 506
ScrFI	CCNGG	3 cut(s)	194, 894, 983
SduI	GDGCHC	2 cut(s)	562, 741
SfaNI	GCATC	5 cut(s)	229, 350, 860, 889, 926
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	3 cut(s)	187, 415, 985
SmiMI	CAYNNNNRTG	1 cut(s)	579
Sse9I	AATT	5 cut(s)	155, 313, 486, 793, 864
SsiI	CCGC	3 cut(s)	27, 75, 570
SspMI	CTAG	2 cut(s)	567, 1002
StyD4I	CCNGG	3 cut(s)	192, 892, 981
StyI	CCWWGG	2 cut(s)	355, 684
TaaI	ACNGT	5 cut(s)	55, 88, 134, 394, 661
TaqII	GACCGA	1 cut(s)	808
TasI	AATT	5 cut(s)	155, 313, 486, 793, 864
TatI	WGTACW	2 cut(s)	422, 789
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	451, 1034
Tru1I	TTAA	2 cut(s)	81, 317
Tru9I	TTAA	2 cut(s)	81, 317
TscAI	CASTG	2 cut(s)	213, 995
TseFI	GTSAC	3 cut(s)	19, 47, 874
TseI	GCWGC	5 cut(s)	350, 446, 625, 746, 836
Tsp45I	GTSAC	3 cut(s)	19, 47, 874
TspDTI	ATGAA	2 cut(s)	466, 704
TspRI	CASTG	2 cut(s)	213, 995
VneI	GTGCAC	1 cut(s)	558
VpaK11BI	GGWCC	3 cut(s)	187, 415, 985
XapI	RAATTY	2 cut(s)	155, 864
XceI	RCATGY	1 cut(s)	979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	2 cut(s)	567, 1002
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.