Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015183

Physical Location & Seq

Genomic Coordinates Reverse (-)

6715874 .. 6718550

Gene Structure 2677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGATGGCTAGAAACGTTCTAGTAAGCGGTGGTGCTGGATACATCGGTAGTCACACGGTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAATCTCGATAATTCCTCCGCCGTCTCTCTTCAACGTGTGAAGAAACTCGCGGCTGAACACGGAGAACGCCTCTCCTTCCACCAGGTGGATCTTCGAGACAGGTCTGCTCTTGAGAAGATATTCTCAGAAACAAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGTGTAGAGAAGCCTTTGCTTTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAAGTTATGGCTCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCAACTGTGTATGGCTCTCCAAAAGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGACGAACAAAGCTATTCATTGAGGAAATCTGCCGCGATGTATACGGTTCTGACCCGGAATGGAAGATTATATTGCTTAGGTATTTCAATCCTGTTGGTGCACATCCTAGTGGTGACATTGGTGAAGACCCTCGTGGTATTCCAAACAATCTCATGCCCTTTGTACAACAAGTGGCTGTTGGTAGGAGACCTCATCTCACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTTCGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTAGAAGATTGCAAGATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTTCTTGAAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGAAAATCCCTCTGGTGATCGCGGGACGTCGACCGGGAGATGCTGAAGTTGTATACGCCTCGACGGAAAGAGCAGAAAGTGAATTGAATTGGAAGGCCAAATATGGGATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCTAGTAATAATCCTTATGGATATGATTCCTCTTCTGAAGACAACTCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0003978 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0022622 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 map00052 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

351

Amino Acids

38.62

Weight (kDa)

5.52

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	5 - 167	1.4e-11	RmlD substrate binding domain
adh_short	PF00106	5 - 94	8e-06	short chain dehydrogenase
Epimerase	PF01370	6 - 268	7.2e-57	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	6 - 131	1.3e-12	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	7 - 330	1.8e-68	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	7 - 159	6.1e-14	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	10 - 178	3.6e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64440 AT4G10960 AT4G23920
fragaria_vesca	FvH4_5g04740
malus_domestica	MD06G1108600.v1.1 MD14G1129500.v1.1
prunus_persica	Prupe.5G121200_v2.0.a1
pyrus_communis	pycom06g10200
rosa_chinensis	RchiOBHm_Chr7g0194661
rosa_laevigata	RLG00000004185
rosa_multiflora	Rmu_sc0008345.1_g000004 Rmu_sc0010033.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261220
rosa_rugosa	Rorug07G0016500
rosa_samantha	Rh7BG144400
rosa_wichuraiana	Rw7G012320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AatII	GACGTC	1 cut(s)	892
AccB7I	CCANNNNNTGG	1 cut(s)	187
AccI	GTMKAC	3 cut(s)	504, 892, 915
AccII	CGCG	3 cut(s)	152, 498, 884
AccIII	TCCGGA	1 cut(s)	857
AciI	CCGC	6 cut(s)	27, 120, 152, 496, 749, 884
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	927
AcyI	GRCGYC	1 cut(s)	889
AdeI	CACNNNGTG	2 cut(s)	58, 187
AfaI	GTAC	4 cut(s)	328, 427, 627, 794
AfiI	CCNNNNNNNGG	2 cut(s)	187, 966
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	7 cut(s)	65, 134, 454, 550, 830, 848, 949
AjnI	CCWGG	1 cut(s)	183
AloI	GAACNNNNNNTCC	4 cut(s)	687, 719, 807, 839
AluBI	AGCT	3 cut(s)	475, 734, 763
AluI	AGCT	3 cut(s)	475, 734, 763
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	3 cut(s)	130, 192, 643
Alw44I	GTGCAC	1 cut(s)	561
AlwI	GGATC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	857
AoxI	GGCC	1 cut(s)	957
ApaLI	GTGCAC	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	221
AsuC2I	CCSGG	2 cut(s)	518, 897
AsuHPI	GGTGA	4 cut(s)	290, 587, 596, 889
BaeGI	GKGCMC	1 cut(s)	565
BaeI	ACNNNNGTAYC	2 cut(s)	31, 64
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	2 cut(s)	594, 1047
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	686, 731
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	32
BcnI	CCSGG	2 cut(s)	518, 897
BcoDI	GTCTC	3 cut(s)	130, 192, 643
BfaI	CTAG	5 cut(s)	9, 20, 570, 764, 1005
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	4 cut(s)	153, 364, 496, 750
BlsI	GCNGC	4 cut(s)	154, 365, 497, 751
Bme1390I	CCNGG	3 cut(s)	185, 518, 897
BmrFI	CCNGG	3 cut(s)	185, 518, 897
BmrI	ACTGGG	1 cut(s)	1009
BmsI	GCATC	4 cut(s)	232, 829, 863, 892
BmuI	ACTGGG	1 cut(s)	1009
BpiI	GAAGAC	2 cut(s)	594, 1047
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bpu10I	CCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	2 cut(s)	518, 897
BsaAI	YACGTR	1 cut(s)	758
BsaHI	GRCGYC	1 cut(s)	889
BsaI	GGTCTC	1 cut(s)	643
BsaWI	WCCGGW	1 cut(s)	857
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 966
Bse1I	ACTGG	1 cut(s)	1004
BseAI	TCCGGA	1 cut(s)	857
BseBI	CCWGG	1 cut(s)	185
BseGI	GGATG	2 cut(s)	565, 854
BseLI	CCNNNNNNNGG	2 cut(s)	187, 966
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	1004
BseRI	GAGGAG	2 cut(s)	446, 989
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	1 cut(s)	350
Bsh1236I	CGCG	3 cut(s)	152, 498, 884
Bsh1285I	CGRYCG	1 cut(s)	896
BshFI	GGCC	1 cut(s)	959
BsiEI	CGRYCG	1 cut(s)	896
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	3 cut(s)	518, 858, 896
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	2 cut(s)	187, 966
BsmAI	GTCTC	3 cut(s)	130, 192, 643
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	900
BsnI	GGCC	1 cut(s)	959
Bso31I	GGTCTC	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp13I	TCCGGA	1 cut(s)	857
Bsp1407I	TGTACA	3 cut(s)	425, 625, 792
Bsp143I	GATC	3 cut(s)	190, 777, 879
BspACI	CCGC	6 cut(s)	27, 120, 152, 496, 749, 884
BspANI	GGCC	1 cut(s)	959
BspCNI	CTCAG	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	857
BspFNI	CGCG	3 cut(s)	152, 498, 884
BspPI	GGATC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	643
BsrGI	TGTACA	3 cut(s)	425, 625, 792
BsrI	ACTGG	1 cut(s)	1004
BssMI	GATC	3 cut(s)	190, 777, 879
BssNAI	GTATAC	2 cut(s)	505, 916
BssNI	GRCGYC	1 cut(s)	889
BssSI	CACGAG	1 cut(s)	594
Bst1107I	GTATAC	2 cut(s)	505, 916
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	4 cut(s)	58, 397, 509, 664
Bst6I	CTCTTC	2 cut(s)	135, 1039
BstACI	GRCGYC	1 cut(s)	889
BstAUI	TGTACA	3 cut(s)	425, 625, 792
BstBAI	YACGTR	1 cut(s)	758
BstDEI	CTNAG	2 cut(s)	226, 539
BstF5I	GGATG	2 cut(s)	565, 854
BstFNI	CGCG	3 cut(s)	152, 498, 884
BstKTI	GATC	3 cut(s)	193, 780, 882
BstMAI	GTCTC	3 cut(s)	130, 192, 643
BstMBI	GATC	3 cut(s)	190, 777, 879
BstMCI	CGRYCG	1 cut(s)	896
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	3 cut(s)	183, 516, 895
BstSLI	GKGCMC	1 cut(s)	565
BstSNI	TACGTA	1 cut(s)	758
BstUI	CGCG	3 cut(s)	152, 498, 884
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	2 cut(s)	594, 1047
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZ17I	GTATAC	2 cut(s)	505, 916
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	959
BtgZI	GCGATG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	565, 854
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 660
CaiI	CAGNNNCTG	1 cut(s)	395
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	4 cut(s)	327, 426, 626, 793
CviAII	CATG	3 cut(s)	359, 616, 719
CviQI	GTAC	4 cut(s)	327, 426, 626, 793
DdeI	CTNAG	2 cut(s)	226, 539
DpnI	GATC	3 cut(s)	192, 779, 881
DpnII	GATC	3 cut(s)	190, 777, 879
DraIII	CACNNNGTG	2 cut(s)	58, 187
Eam1104I	CTCTTC	2 cut(s)	135, 1039
EarI	CTCTTC	2 cut(s)	135, 1039
EciI	GGCGGA	1 cut(s)	109
Eco105I	TACGTA	1 cut(s)	758
Eco31I	GGTCTC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	927
EcoRII	CCWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	3 cut(s)	362, 619, 722
FaqI	GGGAC	1 cut(s)	900
FatI	CATG	3 cut(s)	358, 615, 718
FauI	CCCGC	1 cut(s)	877
FauNDI	CATATG	1 cut(s)	460
FblI	GTMKAC	3 cut(s)	504, 892, 915
Fnu4HI	GCNGC	4 cut(s)	153, 364, 496, 750
FokI	GGATG	2 cut(s)	552, 841
Fsp4HI	GCNGC	4 cut(s)	153, 364, 496, 750
FspBI	CTAG	5 cut(s)	9, 20, 570, 764, 1005
GluI	GCNGC	4 cut(s)	153, 364, 496, 750
HaeIII	GGCC	1 cut(s)	959
HapII	CCGG	3 cut(s)	518, 858, 896
Hin1I	GRCGYC	1 cut(s)	889
Hin1II	CATG	3 cut(s)	362, 619, 722
HincII	GTYRAC	1 cut(s)	893
HindII	GTYRAC	1 cut(s)	893
HinfI	GANTC	1 cut(s)	1028
HpaII	CCGG	3 cut(s)	518, 858, 896
HphI	GGTGA	4 cut(s)	290, 587, 596, 889
Hpy166II	GTNNAC	5 cut(s)	505, 563, 793, 893, 916
Hpy188I	TCNGA	4 cut(s)	229, 514, 803, 1039
Hpy188III	TCNNGA	6 cut(s)	107, 197, 212, 707, 827, 858
Hpy8I	GTNNAC	5 cut(s)	505, 563, 793, 893, 916
Hpy99I	CGWCG	3 cut(s)	92, 894, 928
HpyAV	CCTTC	2 cut(s)	187, 949
HpyCH4III	ACNGT	4 cut(s)	58, 397, 509, 664
HpyCH4IV	ACGT	4 cut(s)	15, 136, 757, 889
HpyCH4V	TGCA	4 cut(s)	245, 366, 563, 774
HpyF3I	CTNAG	2 cut(s)	226, 539
HpySE526I	ACGT	4 cut(s)	15, 136, 757, 889
Hsp92I	GRCGYC	1 cut(s)	889
Hsp92II	CATG	3 cut(s)	362, 619, 722
Kpn2I	TCCGGA	1 cut(s)	857
Kzo9I	GATC	3 cut(s)	190, 777, 879
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	4 cut(s)	232, 829, 863, 892
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	5 cut(s)	9, 20, 570, 764, 1005
MaeII	ACGT	4 cut(s)	15, 136, 757, 889
MaeIII	GTNAC	3 cut(s)	50, 80, 575
MalI	GATC	3 cut(s)	192, 779, 881
MboI	GATC	3 cut(s)	190, 777, 879
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	4 cut(s)	112, 441, 944, 949
MroI	TCCGGA	1 cut(s)	857
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	2 cut(s)	267, 1054
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	3 cut(s)	518, 858, 896
MspR9I	CCNGG	3 cut(s)	185, 518, 897
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	3 cut(s)	152, 498, 884
NciI	CCSGG	2 cut(s)	518, 897
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	3 cut(s)	190, 777, 879
NlaIII	CATG	3 cut(s)	362, 619, 722
NmuCI	GTSAC	2 cut(s)	50, 575
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	1028
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	154, 365, 497, 751
Ppu21I	YACGTR	1 cut(s)	758
PsiI	TTATAA	1 cut(s)	309
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	4 cut(s)	328, 427, 627, 794
RsaNI	GTAC	4 cut(s)	327, 426, 626, 793
RseI	CAYNNNNRTG	1 cut(s)	570
SalI	GTCGAC	1 cut(s)	891
SaqAI	TTAA	2 cut(s)	267, 1054
SatI	GCNGC	4 cut(s)	153, 364, 496, 750
Sau3AI	GATC	3 cut(s)	190, 777, 879
ScrFI	CCNGG	3 cut(s)	185, 518, 897
SduI	GDGCHC	1 cut(s)	565
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	4 cut(s)	232, 829, 863, 892
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SnaBI	TACGTA	1 cut(s)	758
Sse9I	AATT	4 cut(s)	112, 441, 944, 949
SsiI	CCGC	6 cut(s)	27, 120, 152, 496, 749, 884
SspMI	CTAG	5 cut(s)	9, 20, 570, 764, 1005
StyD4I	CCNGG	3 cut(s)	183, 516, 895
TaaI	ACNGT	4 cut(s)	58, 397, 509, 664
TaiI	ACGT	4 cut(s)	18, 139, 760, 892
TaqI	TCGA	5 cut(s)	108, 196, 706, 892, 923
TasI	AATT	4 cut(s)	112, 441, 944, 949
TatI	WGTACW	3 cut(s)	425, 625, 792
TauI	GCSGC	3 cut(s)	155, 498, 752
TfiI	GAWTC	1 cut(s)	1028
Tru1I	TTAA	2 cut(s)	267, 1054
Tru9I	TTAA	2 cut(s)	267, 1054
TscAI	CASTG	2 cut(s)	252, 667
TseFI	GTSAC	2 cut(s)	50, 575
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	2 cut(s)	50, 575
TspDTI	ATGAA	3 cut(s)	372, 469, 707
TspGWI	ACGGA	3 cut(s)	76, 177, 941
TspRI	CASTG	2 cut(s)	252, 667
Van91I	CCANNNNNTGG	1 cut(s)	187
VneI	GTGCAC	1 cut(s)	561
XmiI	GTMKAC	3 cut(s)	504, 892, 915
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	5 cut(s)	9, 20, 570, 764, 1005
ZraI	GACGTC	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.