AT4G23920

UDP-D-glucose UDP-D-galactose 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015183
Physical Location & Seq
Forward (+)
12431097 .. 12433912
2816 bp
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UTR
Exon/CDS
Intron
AT4G23920.1

Sequence Viewer

Length: 1053 bp
ATGGCGAAGAGTGTTTTGGTTACCGGCGGCGCTGGCTATATCGGAAGTCATACTGTTCTTCAACTGCTTGAAGGTGGTTACTCCGCCGTCGTTGTTGACAATTACGACAATTCCTCTGCTGCTTCGCTTCAGCGCGTGAAGAAACTCGCCGGCGAAAACGGAAACCGCCTCTCCTTCCACCAGGTGGATCTCCGAGACAGGCCTGCGCTTGAGAAGATATTCTCAGAAACAAAGTTTGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGTGAGAGTGTGGAGAAGCCTTTGCTCTATTATAATAATAACATTGTTGGCACTGTTACTCTTTTGGAGGTTATGGCTCAATACGGCTGCAAAAATCTTGTATTTTCATCATCAGCTACTGTCTATGGCTGGCCTAAGGAGGTTCCTTGCACTGAGGAGTCACCAATTTCTGCCACTAACCCATATGGCCGTACAAAGCTTTTTATCGAAGAGATTTGCCGGGATGTACATCGTTCTGACTCGGAATGGAAGATCATATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGATCCTCTTGGAGTTCCCAACAATCTCATGCCTTATGTCCAACAAGTTGCAGTTGGCCGGAGACCTCACCTTACTGTCTTTGGAACCGACTACAAGACAAAGGATGGTACAGGGGTTAGAGATTACATTCATGTCATGGATTTAGCAGATGGACACATAGCTGCTCTGCGTAAGCTAGATGATCTCAAAATCAGTTGTGAGGTATACAATCTTGGAACGGGTAATGGAACATCGGTCCTAGAAATGGTCGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCTTTGGTGATGGCTGGACGACGTCCTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAGCGCGAACTAAATTGGAAGGCTAAGAATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAATAACCCCTACGGCTACAATTCCTCCTCCAATGGCTCCTCTTCATAA

Protein Analysis

350

Amino Acids

38.38

Weight (kDa)

6.27

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 3 - 93 5e-07 short chain dehydrogenase
RmlD_sub_bind PF04321 4 - 166 2.3e-12 RmlD substrate binding domain
Epimerase PF01370 5 - 267 2.2e-59 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 5 - 187 7.2e-16 Polysaccharide biosynthesis protein
KR PF08659 5 - 135 1.1e-06 KR domain
GDP_Man_Dehyd PF16363 6 - 329 1.2e-70 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 6 - 159 1.2e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64440 AT4G10960 AT4G23920
fragaria_vesca FvH4_5g04740
malus_domestica MD06G1108600.v1.1 MD14G1129500.v1.1
prunus_persica Prupe.5G121200_v2.0.a1
pyrus_communis pycom06g10200
rosa_chinensis RchiOBHm_Chr7g0194661
rosa_laevigata RLG00000004185
rosa_multiflora Rmu_sc0008345.1_g000004 Rmu_sc0010033.1_g000005
rosa_roxburghii Rroxscaffold_3G00261220
rosa_rugosa Rorug07G0016500
rosa_samantha Rh7BG144400
rosa_wichuraiana Rw7G012320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AatII GACGTC 1 cut(s) 892
AccB7I CCANNNNNTGG 1 cut(s) 184
AccI GTMKAC 1 cut(s) 789
AccII CGCG 2 cut(s) 135, 939
AccIII TCCGGA 1 cut(s) 854
AciI CCGC 3 cut(s) 27, 84, 166
AclWI GGATC 3 cut(s) 195, 581, 993
AcoI YGGCCR 2 cut(s) 460, 640
AcuI CTGAAG 2 cut(s) 113, 924
AcyI GRCGYC 1 cut(s) 889
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 3 cut(s) 466, 501, 694
AfiI CCNNNNNNNGG 2 cut(s) 184, 829
AgsI TTSAA 4 cut(s) 62, 71, 547, 845
AjnI CCWGG 2 cut(s) 180, 892
AjuI GAANNNNNNNTTGG 5 cut(s) 31, 576, 608, 854, 886
AluBI AGCT 4 cut(s) 389, 472, 746, 760
AluI AGCT 4 cut(s) 389, 472, 746, 760
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 3 cut(s) 189, 640, 891
Alw44I GTGCAC 1 cut(s) 558
AlwI GGATC 3 cut(s) 195, 581, 993
AlwNI CAGNNNCTG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 854
AoxI GGCC 4 cut(s) 200, 404, 460, 640
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 4 cut(s) 119, 360, 746, 836
Asp700I GAANNNNTTC 1 cut(s) 218
AspLEI GCGC 4 cut(s) 32, 135, 208, 939
AspS9I GGNCC 1 cut(s) 820
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 5 cut(s) 287, 426, 593, 644, 886
AvaII GGWCC 1 cut(s) 820
AxyI CCTNAGG 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 562
BaeI ACNNNNGTAYC 2 cut(s) 684, 717
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 4 cut(s) 106, 347, 733, 823
BccI CCATC 3 cut(s) 683, 728, 871
BceAI ACGGC 4 cut(s) 71, 373, 447, 1033
BciT130I CCWGG 2 cut(s) 182, 894
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 189, 640, 891
BfaI CTAG 3 cut(s) 567, 761, 824
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 5 cut(s) 28, 120, 361, 747, 837
BlsI GCNGC 5 cut(s) 29, 121, 362, 748, 838
Bme1390I CCNGG 3 cut(s) 182, 494, 894
Bme18I GGWCC 1 cut(s) 820
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 3 cut(s) 417, 670, 1042
BmrFI CCNGG 3 cut(s) 182, 494, 894
BmsI GCATC 2 cut(s) 229, 860
BpmI CTGGAG 1 cut(s) 915
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 889
BsaI GGTCTC 1 cut(s) 640
BsaWI WCCGGW 1 cut(s) 854
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 1013, 1043
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 829
Bse118I RCCGGY 2 cut(s) 23, 149
Bse21I CCTNAGG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 854
BseBI CCWGG 2 cut(s) 182, 894
BseGI GGATG 4 cut(s) 502, 562, 694, 851
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 184, 829
BseMII CTCAG 2 cut(s) 237, 417
BseRI GAGGAG 4 cut(s) 443, 986, 1021, 1033
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 4 cut(s) 106, 347, 733, 823
Bsh1236I CGCG 2 cut(s) 135, 939
BshFI GGCC 4 cut(s) 202, 406, 462, 642
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 5 cut(s) 24, 150, 493, 643, 855
BslI CCNNNNNNNGG 2 cut(s) 184, 829
BsmAI GTCTC 3 cut(s) 189, 640, 891
BsmBI CGTCTC 1 cut(s) 891
BsnI GGCC 4 cut(s) 202, 406, 462, 642
Bso31I GGTCTC 1 cut(s) 640
Bsp1286I GDGCHC 1 cut(s) 562
Bsp13I TCCGGA 1 cut(s) 854
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 5 cut(s) 187, 525, 586, 766, 985
BspACI CCGC 3 cut(s) 27, 84, 166
BspANI GGCC 4 cut(s) 202, 406, 462, 642
BspCNI CTCAG 2 cut(s) 236, 418
BspEI TCCGGA 1 cut(s) 854
BspFNI CGCG 2 cut(s) 135, 939
BspLI GGNNCC 3 cut(s) 417, 670, 1042
BspPI GGATC 3 cut(s) 195, 581, 993
BspTNI GGTCTC 1 cut(s) 640
BsrFI RCCGGY 2 cut(s) 23, 149
BsrGI TGTACA 1 cut(s) 499
BssAI RCCGGY 2 cut(s) 23, 149
BssMI GATC 5 cut(s) 187, 525, 586, 766, 985
BssNAI GTATAC 1 cut(s) 790
BssNI GRCGYC 1 cut(s) 889
Bst1107I GTATAC 1 cut(s) 790
Bst2UI CCWGG 2 cut(s) 182, 894
Bst4CI ACNGT 4 cut(s) 55, 328, 394, 661
Bst6I CTCTTC 2 cut(s) 2, 477
BstACI GRCGYC 1 cut(s) 889
BstAUI TGTACA 1 cut(s) 499
BstC8I GCNNGC 5 cut(s) 34, 151, 204, 404, 1003
BstDEI CTNAG 5 cut(s) 223, 408, 426, 536, 957
BstEII GGTNACC 1 cut(s) 19
BstF5I GGATG 4 cut(s) 502, 562, 694, 851
BstFNI CGCG 2 cut(s) 135, 939
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 4 cut(s) 32, 135, 208, 939
BstKTI GATC 5 cut(s) 190, 528, 589, 769, 988
BstMAI GTCTC 3 cut(s) 189, 640, 891
BstMBI GATC 5 cut(s) 187, 525, 586, 766, 985
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 2 cut(s) 182, 894
BstPI GGTNACC 1 cut(s) 19
BstSCI CCNGG 3 cut(s) 180, 492, 892
BstSLI GKGCMC 1 cut(s) 562
BstUI CGCG 2 cut(s) 135, 939
BstV1I GCAGC 4 cut(s) 106, 347, 733, 823
BstX2I RGATCY 3 cut(s) 187, 586, 985
BstYI RGATCY 3 cut(s) 187, 586, 985
BstZ17I GTATAC 1 cut(s) 790
Bsu36I CCTNAGG 1 cut(s) 408
BsuRI GGCC 4 cut(s) 202, 406, 462, 642
BtsCI GGATG 4 cut(s) 502, 562, 694, 851
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 249, 324, 423
Cac8I GCNNGC 5 cut(s) 34, 151, 204, 404, 1003
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 4 cut(s) 32, 135, 208, 939
Cfr10I RCCGGY 2 cut(s) 23, 149
Cfr13I GGNCC 1 cut(s) 820
CseI GACGC 1 cut(s) 908
CsiI ACCWGGT 1 cut(s) 180
Csp6I GTAC 3 cut(s) 465, 500, 693
CviAII CATG 3 cut(s) 613, 716, 721
CviQI GTAC 3 cut(s) 465, 500, 693
DdeI CTNAG 5 cut(s) 223, 408, 426, 536, 957
DpnI GATC 5 cut(s) 189, 527, 588, 768, 987
DpnII GATC 5 cut(s) 187, 525, 586, 766, 985
DraIII CACNNNGTG 1 cut(s) 184
EaeI YGGCCR 2 cut(s) 460, 640
Eam1104I CTCTTC 2 cut(s) 2, 477
EarI CTCTTC 2 cut(s) 2, 477
EciI GGCGGA 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 820
Eco57I CTGAAG 2 cut(s) 113, 924
Eco81I CCTNAGG 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 19
EcoO65I GGTNACC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 180, 892
Esp3I CGTCTC 1 cut(s) 891
FaeI CATG 3 cut(s) 616, 719, 724
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 3 cut(s) 612, 715, 720
FauNDI CATATG 1 cut(s) 457
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 5 cut(s) 28, 120, 361, 747, 837
FokI GGATG 4 cut(s) 509, 549, 701, 838
Fsp4HI GCNGC 5 cut(s) 28, 120, 361, 747, 837
FspBI CTAG 3 cut(s) 567, 761, 824
GlaI GCGC 4 cut(s) 31, 134, 207, 938
GluI GCNGC 5 cut(s) 28, 120, 361, 747, 837
GsuI CTGGAG 1 cut(s) 915
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 4 cut(s) 202, 406, 462, 642
HapII CCGG 5 cut(s) 24, 150, 493, 643, 855
HgaI GACGC 1 cut(s) 908
HhaI GCGC 4 cut(s) 32, 135, 208, 939
Hin1I GRCGYC 1 cut(s) 889
Hin1II CATG 3 cut(s) 616, 719, 724
Hin6I GCGC 4 cut(s) 30, 133, 206, 937
HinP1I GCGC 4 cut(s) 30, 133, 206, 937
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 2 cut(s) 431, 512
HpaII CCGG 5 cut(s) 24, 150, 493, 643, 855
HphI GGTGA 5 cut(s) 287, 426, 593, 644, 886
Hpy166II GTNNAC 4 cut(s) 97, 560, 790, 913
Hpy188I TCNGA 5 cut(s) 44, 194, 226, 511, 517
Hpy188III TCNNGA 1 cut(s) 855
Hpy8I GTNNAC 4 cut(s) 97, 560, 790, 913
Hpy99I CGWCG 2 cut(s) 92, 891
HpyAV CCTTC 3 cut(s) 65, 184, 946
HpyCH4III ACNGT 4 cut(s) 55, 328, 394, 661
HpyCH4IV ACGT 1 cut(s) 889
HpyCH4V TGCA 5 cut(s) 242, 363, 423, 560, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 5 cut(s) 223, 408, 426, 536, 957
HpySE526I ACGT 1 cut(s) 889
Hsp92I GRCGYC 1 cut(s) 889
Hsp92II CATG 3 cut(s) 616, 719, 724
HspAI GCGC 4 cut(s) 30, 133, 206, 937
Kpn2I TCCGGA 1 cut(s) 854
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 5 cut(s) 187, 525, 586, 766, 985
LmnI GCTCC 1 cut(s) 1046
Lsp1109I GCAGC 4 cut(s) 106, 347, 733, 823
LweI GCATC 2 cut(s) 229, 860
MabI ACCWGGT 1 cut(s) 180
MaeI CTAG 3 cut(s) 567, 761, 824
MaeII ACGT 1 cut(s) 889
MaeIII GTNAC 5 cut(s) 19, 77, 328, 432, 572
MalI GATC 5 cut(s) 189, 527, 588, 768, 987
MboI GATC 5 cut(s) 187, 525, 586, 766, 985
MboII GAAGA 8 cut(s) 19, 50, 151, 226, 494, 535, 596, 1038
MflI RGATCY 3 cut(s) 187, 586, 985
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 6 cut(s) 100, 109, 438, 946, 994, 1024
MlyI GAGTC 2 cut(s) 440, 506
MmeI TCCRAC 1 cut(s) 649
MreI CGCCGGCG 1 cut(s) 149
MroI TCCGGA 1 cut(s) 854
MroNI GCCGGC 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 567
MspI CCGG 5 cut(s) 24, 150, 493, 643, 855
MspR9I CCNGG 3 cut(s) 182, 494, 894
MvaI CCWGG 2 cut(s) 182, 894
MvnI CGCG 2 cut(s) 135, 939
MwoI GCNNNNNNNGC 1 cut(s) 33
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 494
NdeI CATATG 1 cut(s) 457
NdeII GATC 5 cut(s) 187, 525, 586, 766, 985
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 3 cut(s) 616, 719, 724
NlaIV GGNNCC 3 cut(s) 417, 670, 1042
NmuCI GTSAC 1 cut(s) 432
PceI AGGCCT 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 218
PflFI GACNNNGTC 1 cut(s) 888
PflMI CCANNNNNTGG 1 cut(s) 184
PfoI TCCNGGA 1 cut(s) 892
PkrI GCNGC 5 cut(s) 29, 121, 362, 748, 838
PleI GAGTC 2 cut(s) 439, 506
PpsI GAGTC 2 cut(s) 439, 506
PsiI TTATAA 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 180, 892
PspEI GGTNACC 1 cut(s) 19
PspGI CCWGG 2 cut(s) 180, 892
PspN4I GGNNCC 3 cut(s) 417, 670, 1042
PspPI GGNCC 1 cut(s) 820
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 3 cut(s) 187, 586, 985
PsyI GACNNNGTC 1 cut(s) 888
RsaI GTAC 3 cut(s) 466, 501, 694
RsaNI GTAC 3 cut(s) 465, 500, 693
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 5 cut(s) 28, 120, 361, 747, 837
Sau3AI GATC 5 cut(s) 187, 525, 586, 766, 985
Sau96I GGNCC 1 cut(s) 820
SchI GAGTC 2 cut(s) 440, 506
ScrFI CCNGG 3 cut(s) 182, 494, 894
SduI GDGCHC 1 cut(s) 562
SexAI ACCWGGT 1 cut(s) 180
SfaNI GCATC 2 cut(s) 229, 860
SgrAI CRCCGGYG 1 cut(s) 149
SinI GGWCC 1 cut(s) 820
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 6 cut(s) 100, 109, 438, 946, 994, 1024
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 3 cut(s) 27, 84, 166
SspMI CTAG 3 cut(s) 567, 761, 824
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 3 cut(s) 180, 492, 892
TaaI ACNGT 4 cut(s) 55, 328, 394, 661
TaiI ACGT 1 cut(s) 892
TaqI TCGA 1 cut(s) 480
TaqII GACCGA 1 cut(s) 808
TasI AATT 6 cut(s) 100, 109, 438, 946, 994, 1024
TatI WGTACW 1 cut(s) 499
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 3 cut(s) 249, 331, 430
TseFI GTSAC 1 cut(s) 432
TseI GCWGC 4 cut(s) 119, 360, 746, 836
Tsp45I GTSAC 1 cut(s) 432
TspDTI ATGAA 3 cut(s) 369, 704, 1038
TspGWI ACGGA 2 cut(s) 174, 938
TspRI CASTG 3 cut(s) 249, 331, 430
Tth111I GACNNNGTC 1 cut(s) 888
Van91I CCANNNNNTGG 1 cut(s) 184
VneI GTGCAC 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 789
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 3 cut(s) 567, 761, 824
ZraI GACGTC 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.