RNA polymerase sigma
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G64860 AT1G64860 |
| fragaria_vesca | FvH4_7g34280 |
| malus_domestica | MD01G1240100.v1.1 MD07G1311500.v1.1 |
| prunus_persica | Prupe.2G329700_v2.0.a1 Prupe.2G329700_v2.0.a1 |
| pyrus_communis | pycom01g24680 pycom07g28370 |
| rosa_chinensis | RchiOBHm_Chr1g0384631 |
| rosa_laevigata | RLG00000026025 |
| rosa_multiflora | Rmu_sc0012136.1_g000027 |
| rosa_roxburghii | Rroxscaffold_4G00276510 |
| rosa_samantha | Rh1AG474800 Rh1BG432900 Rh1CG446100 Rh1DG465500 |
| rosa_wichuraiana | Rw1G039780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1307 |
| AciI | CCGC | 4 cut(s) | 141, 398, 892, 1232 |
| AclWI | GGATC | 1 cut(s) | 1489 |
| AcsI | RAATTY | 2 cut(s) | 905, 930 |
| AcuI | CTGAAG | 1 cut(s) | 731 |
| AcyI | GRCGYC | 1 cut(s) | 161 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 422, 465, 868, 1092, 1262 |
| AflII | CTTAAG | 1 cut(s) | 1499 |
| AflIII | ACRYGT | 1 cut(s) | 1113 |
| AgsI | TTSAA | 8 cut(s) | 132, 223, 392, 676, 727, 936, 1064, 1195 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 965 |
| AhlI | ACTAGT | 1 cut(s) | 979 |
| AjnI | CCWGG | 1 cut(s) | 1204 |
| AluBI | AGCT | 8 cut(s) | 14, 218, 476, 712, 745, 776, 1054, 1303 |
| AluI | AGCT | 8 cut(s) | 14, 218, 476, 712, 745, 776, 1054, 1303 |
| Alw21I | GWGCWC | 1 cut(s) | 979 |
| Alw26I | GTCTC | 5 cut(s) | 973, 1110, 1205, 1379, 1420 |
| AlwI | GGATC | 1 cut(s) | 1489 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 536, 1148 |
| Ama87I | CYCGRG | 1 cut(s) | 735 |
| AoxI | GGCC | 1 cut(s) | 738 |
| ApeKI | GCWGC | 2 cut(s) | 11, 1466 |
| ApoI | RAATTY | 2 cut(s) | 905, 930 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 146, 178 |
| AspLEI | GCGC | 1 cut(s) | 621 |
| AspS9I | GGNCC | 1 cut(s) | 738 |
| AsuC2I | CCSGG | 1 cut(s) | 417 |
| AsuHPI | GGTGA | 3 cut(s) | 448, 1007, 1435 |
| AvaI | CYCGRG | 1 cut(s) | 735 |
| BbsI | GAAGAC | 2 cut(s) | 638, 1392 |
| Bbv12I | GWGCWC | 1 cut(s) | 979 |
| BbvI | GCAGC | 2 cut(s) | 23, 1478 |
| BccI | CCATC | 1 cut(s) | 754 |
| BciT130I | CCWGG | 1 cut(s) | 1206 |
| BciVI | GTATCC | 2 cut(s) | 423, 1228 |
| BclI | TGATCA | 2 cut(s) | 100, 658 |
| BcnI | CCSGG | 1 cut(s) | 417 |
| BcoDI | GTCTC | 5 cut(s) | 973, 1110, 1205, 1379, 1420 |
| BcuI | ACTAGT | 1 cut(s) | 979 |
| BfaI | CTAG | 6 cut(s) | 546, 773, 777, 980, 1169, 1361 |
| BfmI | CTRYAG | 2 cut(s) | 9, 169 |
| BfrI | CTTAAG | 1 cut(s) | 1499 |
| BfuI | GTATCC | 2 cut(s) | 423, 1228 |
| BisI | GCNGC | 2 cut(s) | 12, 1467 |
| BlpI | GCTNAGC | 1 cut(s) | 825 |
| BlsI | GCNGC | 2 cut(s) | 13, 1468 |
| Bme1390I | CCNGG | 2 cut(s) | 417, 1206 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 965 |
| BmeT110I | CYCGRG | 1 cut(s) | 735 |
| BmgT120I | GGNCC | 1 cut(s) | 738 |
| BmrFI | CCNGG | 2 cut(s) | 417, 1206 |
| BmsI | GCATC | 1 cut(s) | 1168 |
| BpiI | GAAGAC | 2 cut(s) | 638, 1392 |
| BpmI | CTGGAG | 2 cut(s) | 1227, 1469 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 825 |
| BpuEI | CTTGAG | 4 cut(s) | 955, 976, 1021, 1268 |
| BpuMI | CCSGG | 1 cut(s) | 417 |
| BsaBI | GATNNNNATC | 1 cut(s) | 312 |
| BsaHI | GRCGYC | 1 cut(s) | 161 |
| BsaI | GGTCTC | 1 cut(s) | 1205 |
| BsaJI | CCNNGG | 3 cut(s) | 257, 1204, 1256 |
| BsaWI | WCCGGW | 1 cut(s) | 448 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 422, 465, 868, 1092, 1262 |
| Bse1I | ACTGG | 2 cut(s) | 37, 1452 |
| Bse3DI | GCAATG | 2 cut(s) | 1227, 1497 |
| Bse8I | GATNNNNATC | 1 cut(s) | 312 |
| BseBI | CCWGG | 1 cut(s) | 1206 |
| BseDI | CCNNGG | 3 cut(s) | 257, 1204, 1256 |
| BseJI | GATNNNNATC | 1 cut(s) | 312 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 422, 465, 868, 1092, 1262 |
| BseMI | GCAATG | 2 cut(s) | 1227, 1497 |
| BseMII | CTCAG | 3 cut(s) | 81, 240, 839 |
| BseNI | ACTGG | 2 cut(s) | 37, 1452 |
| BseXI | GCAGC | 2 cut(s) | 23, 1478 |
| BshFI | GGCC | 1 cut(s) | 740 |
| BsiHKAI | GWGCWC | 1 cut(s) | 979 |
| BsiHKCI | CYCGRG | 1 cut(s) | 735 |
| BsiSI | CCGG | 2 cut(s) | 416, 449 |
| BslFI | GGGAC | 1 cut(s) | 439 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 422, 465, 868, 1092, 1262 |
| BsmAI | GTCTC | 5 cut(s) | 973, 1110, 1205, 1379, 1420 |
| BsmFI | GGGAC | 1 cut(s) | 439 |
| BsnI | GGCC | 1 cut(s) | 740 |
| Bso31I | GGTCTC | 1 cut(s) | 1205 |
| BsoBI | CYCGRG | 1 cut(s) | 735 |
| Bsp1286I | GDGCHC | 1 cut(s) | 979 |
| Bsp143I | GATC | 5 cut(s) | 100, 313, 658, 1338, 1494 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 825 |
| Bsp19I | CCATGG | 1 cut(s) | 257 |
| BspACI | CCGC | 4 cut(s) | 141, 398, 892, 1232 |
| BspANI | GGCC | 1 cut(s) | 740 |
| BspCNI | CTCAG | 3 cut(s) | 80, 241, 838 |
| BspMAI | CTGCAG | 1 cut(s) | 13 |
| BspPI | GGATC | 1 cut(s) | 1489 |
| BspTI | CTTAAG | 1 cut(s) | 1499 |
| BspTNI | GGTCTC | 1 cut(s) | 1205 |
| BsrDI | GCAATG | 2 cut(s) | 1227, 1497 |
| BsrI | ACTGG | 2 cut(s) | 37, 1452 |
| BssECI | CCNNGG | 3 cut(s) | 257, 1204, 1256 |
| BssMI | GATC | 5 cut(s) | 100, 313, 658, 1338, 1494 |
| BssNI | GRCGYC | 1 cut(s) | 161 |
| BssT1I | CCWWGG | 1 cut(s) | 257 |
| Bst2UI | CCWGG | 1 cut(s) | 1206 |
| Bst4CI | ACNGT | 3 cut(s) | 117, 348, 1223 |
| Bst6I | CTCTTC | 1 cut(s) | 1469 |
| BstACI | GRCGYC | 1 cut(s) | 161 |
| BstAFI | CTTAAG | 1 cut(s) | 1499 |
| BstC8I | GCNNGC | 2 cut(s) | 714, 1301 |
| BstDEI | CTNAG | 7 cut(s) | 67, 249, 498, 599, 627, 825, 1055 |
| BstDSI | CCRYGG | 2 cut(s) | 257, 1256 |
| BstEII | GGTNACC | 1 cut(s) | 1005 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 866 |
| BstHHI | GCGC | 1 cut(s) | 621 |
| BstKTI | GATC | 5 cut(s) | 103, 316, 661, 1341, 1497 |
| BstMAI | GTCTC | 5 cut(s) | 973, 1110, 1205, 1379, 1420 |
| BstMBI | GATC | 5 cut(s) | 100, 313, 658, 1338, 1494 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 158, 1145 |
| BstNI | CCWGG | 1 cut(s) | 1206 |
| BstNSI | RCATGY | 1 cut(s) | 1117 |
| BstPI | GGTNACC | 1 cut(s) | 1005 |
| BstSCI | CCNGG | 2 cut(s) | 415, 1204 |
| BstSFI | CTRYAG | 2 cut(s) | 9, 169 |
| BstV1I | GCAGC | 2 cut(s) | 23, 1478 |
| BstV2I | GAAGAC | 2 cut(s) | 638, 1392 |
| BsuI | GTATCC | 2 cut(s) | 423, 1228 |
| BsuRI | GGCC | 1 cut(s) | 740 |
| BtgI | CCRYGG | 2 cut(s) | 257, 1256 |
| BtsIMutI | CAGTG | 2 cut(s) | 30, 1445 |
| Cac8I | GCNNGC | 2 cut(s) | 714, 1301 |
| CaiI | CAGNNNCTG | 2 cut(s) | 536, 1148 |
| CfoI | GCGC | 1 cut(s) | 621 |
| Cfr13I | GGNCC | 1 cut(s) | 738 |
| CseI | GACGC | 1 cut(s) | 150 |
| CviAII | CATG | 6 cut(s) | 258, 521, 605, 1022, 1114, 1380 |
| DdeI | CTNAG | 7 cut(s) | 67, 249, 498, 599, 627, 825, 1055 |
| DpnI | GATC | 5 cut(s) | 102, 315, 660, 1340, 1496 |
| DpnII | GATC | 5 cut(s) | 100, 313, 658, 1338, 1494 |
| DriI | GACNNNNNGTC | 1 cut(s) | 965 |
| Eam1104I | CTCTTC | 1 cut(s) | 1469 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 965 |
| EarI | CTCTTC | 1 cut(s) | 1469 |
| Eco130I | CCWWGG | 1 cut(s) | 257 |
| Eco31I | GGTCTC | 1 cut(s) | 1205 |
| Eco32I | GATATC | 1 cut(s) | 732 |
| Eco57I | CTGAAG | 1 cut(s) | 731 |
| Eco88I | CYCGRG | 1 cut(s) | 735 |
| Eco91I | GGTNACC | 1 cut(s) | 1005 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 866 |
| EcoO65I | GGTNACC | 1 cut(s) | 1005 |
| EcoRII | CCWGG | 1 cut(s) | 1204 |
| EcoRV | GATATC | 1 cut(s) | 732 |
| EcoT14I | CCWWGG | 1 cut(s) | 257 |
| EcoT22I | ATGCAT | 1 cut(s) | 1183 |
| ErhI | CCWWGG | 1 cut(s) | 257 |
| FaeI | CATG | 6 cut(s) | 261, 524, 608, 1025, 1117, 1383 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 582, 614 |
| FaqI | GGGAC | 1 cut(s) | 439 |
| FatI | CATG | 6 cut(s) | 257, 520, 604, 1021, 1113, 1379 |
| FauI | CCCGC | 2 cut(s) | 134, 885 |
| FbaI | TGATCA | 2 cut(s) | 100, 658 |
| Fnu4HI | GCNGC | 2 cut(s) | 12, 1467 |
| Fsp4HI | GCNGC | 2 cut(s) | 12, 1467 |
| FspBI | CTAG | 6 cut(s) | 546, 773, 777, 980, 1169, 1361 |
| GlaI | GCGC | 1 cut(s) | 620 |
| GluI | GCNGC | 2 cut(s) | 12, 1467 |
| GsuI | CTGGAG | 2 cut(s) | 1227, 1469 |
| HaeIII | GGCC | 1 cut(s) | 740 |
| HapII | CCGG | 2 cut(s) | 416, 449 |
| HgaI | GACGC | 1 cut(s) | 150 |
| HhaI | GCGC | 1 cut(s) | 621 |
| Hin1I | GRCGYC | 1 cut(s) | 161 |
| Hin1II | CATG | 6 cut(s) | 261, 524, 608, 1025, 1117, 1383 |
| Hin6I | GCGC | 1 cut(s) | 619 |
| HinP1I | GCGC | 1 cut(s) | 619 |
| HindIII | AAGCTT | 3 cut(s) | 216, 1052, 1301 |
| HpaII | CCGG | 2 cut(s) | 416, 449 |
| HphI | GGTGA | 3 cut(s) | 448, 1007, 1435 |
| Hpy166II | GTNNAC | 2 cut(s) | 985, 1397 |
| Hpy188I | TCNGA | 9 cut(s) | 70, 177, 538, 703, 859, 884, 929, 1043, 1322 |
| Hpy188III | TCNNGA | 8 cut(s) | 653, 669, 972, 993, 1064, 1169, 1361, 1413 |
| Hpy8I | GTNNAC | 2 cut(s) | 985, 1397 |
| Hpy99I | CGWCG | 2 cut(s) | 166, 193 |
| HpyAV | CCTTC | 5 cut(s) | 195, 480, 670, 708, 1197 |
| HpyCH4III | ACNGT | 3 cut(s) | 117, 348, 1223 |
| HpyCH4V | TGCA | 7 cut(s) | 11, 716, 1049, 1100, 1139, 1181, 1313 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 158, 1145 |
| HpyF3I | CTNAG | 7 cut(s) | 67, 249, 498, 599, 627, 825, 1055 |
| Hsp92I | GRCGYC | 1 cut(s) | 161 |
| Hsp92II | CATG | 6 cut(s) | 261, 524, 608, 1025, 1117, 1383 |
| HspAI | GCGC | 1 cut(s) | 619 |
| Ksp22I | TGATCA | 2 cut(s) | 100, 658 |
| Kzo9I | GATC | 5 cut(s) | 100, 313, 658, 1338, 1494 |
| LmnI | GCTCC | 1 cut(s) | 845 |
| Lsp1109I | GCAGC | 2 cut(s) | 23, 1478 |
| LweI | GCATC | 1 cut(s) | 1168 |
| MaeI | CTAG | 6 cut(s) | 546, 773, 777, 980, 1169, 1361 |
| MaeIII | GTNAC | 5 cut(s) | 73, 197, 348, 1005, 1223 |
| MalI | GATC | 5 cut(s) | 102, 315, 660, 1340, 1496 |
| MboI | GATC | 5 cut(s) | 100, 313, 658, 1338, 1494 |
| MhlI | GDGCHC | 1 cut(s) | 979 |
| MluCI | AATT | 7 cut(s) | 284, 318, 339, 838, 905, 930, 1504 |
| MlyI | GAGTC | 4 cut(s) | 18, 511, 1023, 1112 |
| MmeI | TCCRAC | 1 cut(s) | 356 |
| MnlI | CCTC | 9 cut(s) | 328, 557, 996, 1093, 1138, 1282, 1413, 1464, 1480 |
| Mph1103I | ATGCAT | 1 cut(s) | 1183 |
| MseI | TTAA | 3 cut(s) | 525, 1037, 1500 |
| MslI | CAYNNNNRTG | 3 cut(s) | 69, 1020, 1266 |
| MspA1I | CMGCKG | 1 cut(s) | 14 |
| MspCI | CTTAAG | 1 cut(s) | 1499 |
| MspI | CCGG | 2 cut(s) | 416, 449 |
| MspR9I | CCNGG | 2 cut(s) | 417, 1206 |
| MvaI | CCWGG | 1 cut(s) | 1206 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 158, 1145 |
| NciI | CCSGG | 1 cut(s) | 417 |
| NcoI | CCATGG | 1 cut(s) | 257 |
| NdeII | GATC | 5 cut(s) | 100, 313, 658, 1338, 1494 |
| NlaIII | CATG | 6 cut(s) | 261, 524, 608, 1025, 1117, 1383 |
| NmeAIII | GCCGAG | 1 cut(s) | 766 |
| NmuCI | GTSAC | 1 cut(s) | 197 |
| NsiI | ATGCAT | 1 cut(s) | 1183 |
| NspI | RCATGY | 1 cut(s) | 1117 |
| PciI | ACATGT | 1 cut(s) | 1113 |
| PfeI | GAWTC | 6 cut(s) | 193, 379, 445, 911, 955, 1074 |
| PkrI | GCNGC | 2 cut(s) | 13, 1468 |
| PleI | GAGTC | 4 cut(s) | 18, 511, 1023, 1111 |
| PpsI | GAGTC | 4 cut(s) | 18, 511, 1023, 1111 |
| PscI | ACATGT | 1 cut(s) | 1113 |
| PsiI | TTATAA | 1 cut(s) | 1307 |
| Psp6I | CCWGG | 1 cut(s) | 1204 |
| PspEI | GGTNACC | 1 cut(s) | 1005 |
| PspGI | CCWGG | 1 cut(s) | 1204 |
| PspPI | GGNCC | 1 cut(s) | 738 |
| PstI | CTGCAG | 1 cut(s) | 13 |
| PstNI | CAGNNNCTG | 2 cut(s) | 536, 1148 |
| PvuII | CAGCTG | 1 cut(s) | 14 |
| RseI | CAYNNNNRTG | 3 cut(s) | 69, 1020, 1266 |
| SaqAI | TTAA | 3 cut(s) | 525, 1037, 1500 |
| SatI | GCNGC | 2 cut(s) | 12, 1467 |
| Sau3AI | GATC | 5 cut(s) | 100, 313, 658, 1338, 1494 |
| Sau96I | GGNCC | 1 cut(s) | 738 |
| SchI | GAGTC | 4 cut(s) | 18, 511, 1023, 1112 |
| ScrFI | CCNGG | 2 cut(s) | 417, 1206 |
| SduI | GDGCHC | 1 cut(s) | 979 |
| SfaNI | GCATC | 1 cut(s) | 1168 |
| SfcI | CTRYAG | 2 cut(s) | 9, 169 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 69, 1020, 1266 |
| SmlI | CTYRAG | 5 cut(s) | 970, 991, 1000, 1283, 1499 |
| SmoI | CTYRAG | 5 cut(s) | 970, 991, 1000, 1283, 1499 |
| SpeI | ACTAGT | 1 cut(s) | 979 |
| Sse9I | AATT | 7 cut(s) | 284, 318, 339, 838, 905, 930, 1504 |
| SsiI | CCGC | 4 cut(s) | 141, 398, 892, 1232 |
| SspMI | CTAG | 6 cut(s) | 546, 773, 777, 980, 1169, 1361 |
| StyD4I | CCNGG | 2 cut(s) | 415, 1204 |
| StyI | CCWWGG | 1 cut(s) | 257 |
| TaaI | ACNGT | 3 cut(s) | 117, 348, 1223 |
| TaqI | TCGA | 6 cut(s) | 164, 191, 404, 958, 1345, 1412 |
| TasI | AATT | 7 cut(s) | 284, 318, 339, 838, 905, 930, 1504 |
| TfiI | GAWTC | 6 cut(s) | 193, 379, 445, 911, 955, 1074 |
| Tru1I | TTAA | 3 cut(s) | 525, 1037, 1500 |
| Tru9I | TTAA | 3 cut(s) | 525, 1037, 1500 |
| TscAI | CASTG | 2 cut(s) | 37, 1452 |
| TseFI | GTSAC | 1 cut(s) | 197 |
| TseI | GCWGC | 2 cut(s) | 11, 1466 |
| Tsp45I | GTSAC | 1 cut(s) | 197 |
| TspDTI | ATGAA | 5 cut(s) | 42, 99, 375, 720, 1038 |
| TspGWI | ACGGA | 3 cut(s) | 448, 1245, 1414 |
| TspRI | CASTG | 2 cut(s) | 37, 1452 |
| Vha464I | CTTAAG | 1 cut(s) | 1499 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 866 |
| XapI | RAATTY | 2 cut(s) | 905, 930 |
| XbaI | TCTAGA | 2 cut(s) | 1168, 1360 |
| XceI | RCATGY | 1 cut(s) | 1117 |
| XspI | CTAG | 6 cut(s) | 546, 773, 777, 980, 1169, 1361 |
| Zsp2I | ATGCAT | 1 cut(s) | 1183 |