Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013559

Physical Location & Seq

Genomic Coordinates Reverse (-)

27692817 .. 27696176

Gene Structure 3360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28370.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGATGGCCATAGCTGCTGTTATTGGCCTTACTACGGGGAAGAGGCTCTTGAATTCCTCCTCCTCTTATTATTCAGATGTCACAGAAAAGCTCTTTCATCTCAATGACCATGCCTTCTTACATTGCCATTTCTCTTCAACAAGGAATCTTGTCACCGCCAGAAAGTCTAATTCCAACTACACTAGTTCCAGATTTTCATCTTCCAATCGAGCTGACCACTCCAGTAAGGCTCTCAAAGACCAGGTCAACGCTGCCTCTGCTCCTTCCTCAACCGCACAGCAATGGTTTCACGACTTCAATGACTTGGAGGGGGAAAGCTCTGATCTTGAATATTCAGTGGACGCACTTCTTTTGCTACAGAAGTCTATGCTCGAAAAGCAATGGAATCTTTCCTTCGAGAAAAAAATATTTACGGATTCAACAATAAAAACAGCTACTAACAAGAGGATACCAGTCACTTGTTCTGGGGTATCTGCTCGCCACAGAAGAATGAGTAATAGGAGGAATGCTTTCAGCTTAAACCGTTGTTTAACACAACCTAGCACCAATAAGTCTTTGAGACCAGTCATCAGTCCAGAGCTGCTTCAGAGTCGTTTAAAGGGTTATGTGAAGGGTGTTCTTAGTGAGGATTTGCTGACTCACACTGAGGTTGTGCGCCTGTCAAAGAAAATTAAAATTGGCCTTTCTGTTGAGGAACATAAATCAAGACTGAAGGAGAGACTGGGATGCGAGCCCTCTGATGAACAGCTTGCGACTTCATTGAGGATTTCCCGTGCTGAATTAAAGTCAAAGTTGATTGAATGTTCTTTGGCAAGAGAGAAGCTGGCAATGAGCAATGTTCGTCTGGTCATGTCCATTGCTCAAAAATATGATAATATGGGCGCTGAAATGGCTGACCTAATCCAGGGCGGGTTAATTGGACTATTGCGTGGGATTGAAAAATTTGATTCTTCAAAGGGGTTCAAAATTTCTACTTATGTTTACTGGTGGATACGTCAGGGTGTTTCAAGAGCACTGGTTGAAAATTCCAAAACCTTGAGACTGCCAACACATTTGCACGAGAGGTTAGGTTTAATCAGAAATGCAAAAATTAGACTGGAAGAGAAAGGAATAACTCCATCAATTGATAGAATCGCAGAAAGTCTGAATATGTCCAAAAAGAAAGTTAGGAATGCTACAGAGGCAATCAGCAAGGTTTTTTCACTTGATAGGGACGCATTCCCCTCTTTGAATGGACTTCCAGGAGAAACTCATCATAGTGTAAGTGTCGATTACATCACCTCAATTTCCGCCATTCCATACATTGCAGATAATCGCCTTGAGAACATCCCATGGAATGGGGTGGATGCGTGGGCACTCAAGGATGAAGTAAACAAGCTCATAAATATGATGCTTGGGGAACGGGAAAGAGAGATCATACGGCTTTACTATGGTCTGGATAATGAATGTCTTACATGGGAGGACATTAGTAAACGTATAGGATTGTCCAGAGAAAGGGTTAGGCAAGTCGGACTCGTTGCTCTAGAGAAACTGAAACATGCTGCAAGAAAAACCGAGATGGAGGCCTTGCTAGTCAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010109 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0051775 GO:0060255 GO:0065007 GO:0071214 GO:0071461 GO:0071478 GO:0071482 GO:0071704 GO:0080005 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

528

Amino Acids

59.53

Weight (kDa)

9.57

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64860 AT1G64860
fragaria_vesca	FvH4_7g34280
malus_domestica	MD01G1240100.v1.1 MD07G1311500.v1.1
prunus_persica	Prupe.2G329700_v2.0.a1 Prupe.2G329700_v2.0.a1
pyrus_communis	pycom01g24680 pycom07g28370
rosa_chinensis	RchiOBHm_Chr1g0384631
rosa_laevigata	RLG00000026025
rosa_multiflora	Rmu_sc0012136.1_g000027
rosa_roxburghii	Rroxscaffold_4G00276510
rosa_samantha	Rh1AG474800 Rh1BG432900 Rh1CG446100 Rh1DG465500
rosa_wichuraiana	Rw1G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1337
AciI	CCGC	4 cut(s)	156, 273, 909, 1290
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	4 cut(s)	52, 941, 966, 1024
AcuI	CTGAAG	2 cut(s)	569, 731
AfiI	CCNNNNNNNGG	4 cut(s)	34, 904, 1337, 1494
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	3 cut(s)	240, 903, 1240
Alw21I	GWGCWC	1 cut(s)	1015
Alw26I	GTCTC	3 cut(s)	553, 712, 1033
AoxI	GGCC	4 cut(s)	6, 25, 679, 1563
ApeKI	GCWGC	4 cut(s)	14, 251, 580, 1541
ApoI	RAATTY	4 cut(s)	52, 941, 966, 1024
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	657, 884
AsuHPI	GGTGA	2 cut(s)	145, 1270
BaeGI	GKGCMC	1 cut(s)	1357
BalI	TGGCCA	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	735
BauI	CACGAG	1 cut(s)	1058
Bbv12I	GWGCWC	1 cut(s)	1015
BbvI	GCAGC	3 cut(s)	238, 567, 1528
BccI	CCATC	2 cut(s)	1126, 1552
BceAI	ACGGC	1 cut(s)	1436
BciT130I	CCWGG	3 cut(s)	242, 905, 1242
BciVI	GTATCC	2 cut(s)	441, 984
BcoDI	GTCTC	3 cut(s)	553, 712, 1033
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	4 cut(s)	183, 540, 1523, 1571
BfmI	CTRYAG	2 cut(s)	356, 1176
BfoI	RGCGCY	1 cut(s)	885
BfuI	GTATCC	2 cut(s)	441, 984
BisI	GCNGC	4 cut(s)	15, 252, 581, 1542
BlsI	GCNGC	4 cut(s)	16, 253, 582, 1543
Bme1390I	CCNGG	3 cut(s)	242, 905, 1242
BmrFI	CCNGG	3 cut(s)	242, 905, 1242
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	3 cut(s)	716, 1336, 1380
BmuI	ACTGGG	1 cut(s)	731
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	3 cut(s)	1057, 1340, 1343
BsaBI	GATNNNNATC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	2 cut(s)	904, 1331
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 904, 1337, 1494
Bse1I	ACTGG	7 cut(s)	222, 452, 563, 726, 989, 1020, 1101
Bse3DI	GCAATG	7 cut(s)	121, 287, 386, 834, 841, 855, 1302
Bse8I	GATNNNNATC	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	242, 905, 1242
BseDI	CCNNGG	2 cut(s)	904, 1331
BseGI	GGATG	4 cut(s)	731, 1326, 1351, 1369
BseJI	GATNNNNATC	1 cut(s)	196
BseLI	CCNNNNNNNGG	4 cut(s)	34, 904, 1337, 1494
BseMI	GCAATG	7 cut(s)	121, 287, 386, 834, 841, 855, 1302
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	7 cut(s)	222, 452, 563, 726, 989, 1020, 1101
BseRI	GAGGAG	2 cut(s)	49, 52
BseSI	GKGCMC	1 cut(s)	1357
BseXI	GCAGC	3 cut(s)	238, 567, 1528
BshFI	GGCC	4 cut(s)	8, 27, 681, 1565
BsiHKAI	GWGCWC	1 cut(s)	1015
BslFI	GGGAC	1 cut(s)	1226
BslI	CCNNNNNNNGG	4 cut(s)	34, 904, 1337, 1494
BsmAI	GTCTC	3 cut(s)	553, 712, 1033
BsmFI	GGGAC	1 cut(s)	1226
BsmI	GAATGC	3 cut(s)	511, 1177, 1217
BsnI	GGCC	4 cut(s)	8, 27, 681, 1565
Bso31I	GGTCTC	1 cut(s)	553
Bsp1286I	GDGCHC	3 cut(s)	735, 1015, 1357
Bsp143I	GATC	2 cut(s)	322, 1413
Bsp19I	CCATGG	1 cut(s)	1331
BspACI	CCGC	4 cut(s)	156, 273, 909, 1290
BspANI	GGCC	4 cut(s)	8, 27, 681, 1565
BspCNI	CTCAG	1 cut(s)	637
BspTNI	GGTCTC	1 cut(s)	553
BsrDI	GCAATG	7 cut(s)	121, 287, 386, 834, 841, 855, 1302
BsrI	ACTGG	7 cut(s)	222, 452, 563, 726, 989, 1020, 1101
BssECI	CCNNGG	2 cut(s)	904, 1331
BssMI	GATC	2 cut(s)	322, 1413
BssSI	CACGAG	1 cut(s)	1058
BssT1I	CCWWGG	1 cut(s)	1331
Bst2BI	CACGAG	1 cut(s)	1058
Bst2UI	CCWGG	3 cut(s)	242, 905, 1242
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	3 cut(s)	35, 139, 1095
BstC8I	GCNNGC	4 cut(s)	478, 731, 750, 825
BstDEI	CTNAG	2 cut(s)	620, 645
BstDSI	CCRYGG	1 cut(s)	1331
BstENI	CCTNNNNNAGG	1 cut(s)	902
BstF5I	GGATG	4 cut(s)	731, 1326, 1351, 1369
BstH2I	RGCGCY	1 cut(s)	885
BstHHI	GCGC	2 cut(s)	657, 884
BstKTI	GATC	2 cut(s)	325, 1416
BstMAI	GTCTC	3 cut(s)	553, 712, 1033
BstMBI	GATC	2 cut(s)	322, 1413
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 257, 376, 890, 1181, 1576
BstNI	CCWGG	3 cut(s)	242, 905, 1242
BstNSI	RCATGY	1 cut(s)	1541
BstSCI	CCNGG	3 cut(s)	240, 903, 1240
BstSFI	CTRYAG	2 cut(s)	356, 1176
BstSLI	GKGCMC	1 cut(s)	1357
BstV1I	GCAGC	3 cut(s)	238, 567, 1528
BsuI	GTATCC	2 cut(s)	441, 984
BsuRI	GGCC	4 cut(s)	8, 27, 681, 1565
BtgI	CCRYGG	1 cut(s)	1331
BtsCI	GGATG	4 cut(s)	731, 1326, 1351, 1369
BtsIMutI	CAGTG	3 cut(s)	342, 642, 1013
Cac8I	GCNNGC	4 cut(s)	478, 731, 750, 825
CfoI	GCGC	2 cut(s)	657, 884
CseI	GACGC	2 cut(s)	350, 1223
CsiI	ACCWGGT	1 cut(s)	240
CviAII	CATG	5 cut(s)	110, 850, 1332, 1455, 1538
DdeI	CTNAG	2 cut(s)	620, 645
DpnI	GATC	2 cut(s)	324, 1415
DpnII	GATC	2 cut(s)	322, 1413
DraI	TTTAAA	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	35, 139, 1095
EarI	CTCTTC	3 cut(s)	35, 139, 1095
EciI	GGCGGA	1 cut(s)	1279
Eco130I	CCWWGG	1 cut(s)	1331
Eco147I	AGGCCT	1 cut(s)	1565
Eco24I	GRGCYC	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	569, 731
EcoNI	CCTNNNNNAGG	1 cut(s)	902
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	3 cut(s)	240, 903, 1240
EcoT14I	CCWWGG	1 cut(s)	1331
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	1331
FaeI	CATG	5 cut(s)	113, 853, 1335, 1458, 1541
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	1226
FatI	CATG	5 cut(s)	109, 849, 1331, 1454, 1537
FauI	CCCGC	1 cut(s)	902
Fnu4HI	GCNGC	4 cut(s)	15, 252, 581, 1542
FokI	GGATG	4 cut(s)	738, 1313, 1358, 1376
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	4 cut(s)	15, 252, 581, 1542
FspBI	CTAG	4 cut(s)	183, 540, 1523, 1571
GlaI	GCGC	2 cut(s)	656, 883
GluI	GCNGC	4 cut(s)	15, 252, 581, 1542
GsuI	CTGGAG	1 cut(s)	205
HaeII	RGCGCY	1 cut(s)	885
HaeIII	GGCC	4 cut(s)	8, 27, 681, 1565
HgaI	GACGC	2 cut(s)	350, 1223
HhaI	GCGC	2 cut(s)	657, 884
Hin1II	CATG	5 cut(s)	113, 853, 1335, 1458, 1541
Hin6I	GCGC	2 cut(s)	655, 882
HinP1I	GCGC	2 cut(s)	655, 882
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	8 cut(s)	145, 385, 416, 589, 637, 947, 1131, 1512
HphI	GGTGA	2 cut(s)	145, 1270
Hpy166II	GTNNAC	5 cut(s)	247, 340, 982, 1372, 1472
Hpy188I	TCNGA	7 cut(s)	76, 322, 588, 739, 1079, 1146, 1511
Hpy8I	GTNNAC	5 cut(s)	247, 340, 982, 1372, 1472
HpyAV	CCTTC	5 cut(s)	124, 273, 403, 604, 706
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	2 cut(s)	994, 1474
HpyCH4V	TGCA	4 cut(s)	1057, 1085, 1307, 1544
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 257, 376, 890, 1181, 1576
HpyF3I	CTNAG	2 cut(s)	620, 645
HpySE526I	ACGT	2 cut(s)	994, 1474
Hsp92II	CATG	5 cut(s)	113, 853, 1335, 1458, 1541
HspAI	GCGC	2 cut(s)	655, 882
Kzo9I	GATC	2 cut(s)	322, 1413
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	3 cut(s)	238, 567, 1528
LweI	GCATC	3 cut(s)	716, 1336, 1380
MabI	ACCWGGT	1 cut(s)	240
MaeI	CTAG	4 cut(s)	183, 540, 1523, 1571
MaeII	ACGT	2 cut(s)	994, 1474
MaeIII	GTNAC	3 cut(s)	79, 151, 454
MalI	GATC	2 cut(s)	324, 1415
MboI	GATC	2 cut(s)	322, 1413
MboII	GAAGA	6 cut(s)	52, 126, 192, 498, 942, 1112
MfeI	CAATTG	1 cut(s)	1122
MhlI	GDGCHC	3 cut(s)	735, 1015, 1357
MlsI	TGGCCA	1 cut(s)	8
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	598, 631, 1506
MmeI	TCCRAC	2 cut(s)	198, 1489
Mox20I	TGGCCA	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	8 cut(s)	518, 530, 596, 672, 782, 914, 1073, 1582
MslI	CAYNNNNRTG	4 cut(s)	102, 280, 1257, 1385
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	242, 905, 1242
MunI	CAATTG	1 cut(s)	1122
Mva1269I	GAATGC	3 cut(s)	511, 1177, 1217
MvaI	CCWGG	3 cut(s)	242, 905, 1242
MwoI	GCNNNNNNNGC	6 cut(s)	14, 257, 376, 890, 1181, 1576
NcoI	CCATGG	1 cut(s)	1331
NdeII	GATC	2 cut(s)	322, 1413
NlaIII	CATG	5 cut(s)	113, 853, 1335, 1458, 1541
NmuCI	GTSAC	3 cut(s)	79, 151, 454
NspI	RCATGY	1 cut(s)	1541
PceI	AGGCCT	1 cut(s)	1565
PctI	GAATGC	3 cut(s)	511, 1177, 1217
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	5 cut(s)	145, 385, 416, 947, 1131
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	1337
PfoI	TCCNGGA	1 cut(s)	1240
PkrI	GCNGC	4 cut(s)	16, 253, 582, 1543
PleI	GAGTC	3 cut(s)	597, 631, 1506
PpsI	GAGTC	3 cut(s)	597, 631, 1506
Psp6I	CCWGG	3 cut(s)	240, 903, 1240
PspGI	CCWGG	3 cut(s)	240, 903, 1240
PsyI	GACNNNGTC	1 cut(s)	242
RseI	CAYNNNNRTG	4 cut(s)	102, 280, 1257, 1385
SaqAI	TTAA	8 cut(s)	518, 530, 596, 672, 782, 914, 1073, 1582
SatI	GCNGC	4 cut(s)	15, 252, 581, 1542
Sau3AI	GATC	2 cut(s)	322, 1413
SchI	GAGTC	3 cut(s)	598, 631, 1506
ScrFI	CCNGG	3 cut(s)	242, 905, 1242
SduI	GDGCHC	3 cut(s)	735, 1015, 1357
SexAI	ACCWGGT	1 cut(s)	240
SfaNI	GCATC	3 cut(s)	716, 1336, 1380
SfcI	CTRYAG	2 cut(s)	356, 1176
SmiMI	CAYNNNNRTG	4 cut(s)	102, 280, 1257, 1385
SmlI	CTYRAG	3 cut(s)	1036, 1319, 1358
SmoI	CTYRAG	3 cut(s)	1036, 1319, 1358
SpeI	ACTAGT	1 cut(s)	182
SseBI	AGGCCT	1 cut(s)	1565
SsiI	CCGC	4 cut(s)	156, 273, 909, 1290
SspI	AATATT	2 cut(s)	332, 408
SspMI	CTAG	4 cut(s)	183, 540, 1523, 1571
StuI	AGGCCT	1 cut(s)	1565
StyD4I	CCNGG	3 cut(s)	240, 903, 1240
StyI	CCWWGG	1 cut(s)	1331
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	2 cut(s)	997, 1477
TaqI	TCGA	4 cut(s)	208, 372, 396, 1269
TfiI	GAWTC	5 cut(s)	145, 385, 416, 947, 1131
Tru1I	TTAA	8 cut(s)	518, 530, 596, 672, 782, 914, 1073, 1582
Tru9I	TTAA	8 cut(s)	518, 530, 596, 672, 782, 914, 1073, 1582
TscAI	CASTG	3 cut(s)	342, 649, 1020
TseFI	GTSAC	3 cut(s)	79, 151, 454
TseI	GCWGC	4 cut(s)	14, 251, 580, 1541
Tsp45I	GTSAC	3 cut(s)	79, 151, 454
TspDTI	ATGAA	6 cut(s)	86, 186, 747, 756, 1380, 1458
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	3 cut(s)	342, 649, 1020
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	1337
XagI	CCTNNNNNAGG	1 cut(s)	902
XapI	RAATTY	4 cut(s)	52, 941, 966, 1024
XbaI	TCTAGA	1 cut(s)	1522
XceI	RCATGY	1 cut(s)	1541
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	4 cut(s)	183, 540, 1523, 1571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.