Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013559

Physical Location & Seq

Genomic Coordinates Reverse (-)

36655665 .. 36660189

Gene Structure 4525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1311500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGATGGCCATAGCTGCTGTTATTGGCCTTACTACTGGGAAGAGGCTCTTGAGTTCCTCCTCCTCCTCTTATTATTCAGATGTCACAGAAAAGCTCTTTCATCTCAATGACCATGCCTTCTTACATTGCCATTTCTCTTCAACAAAGAATCTTGTCACCGCCAGAAAGTCTAATTCCAACTACACCAGTTCCAGATTTTCATCTTCCAATCGAGCTGACCACTCCAGTAGGGCTCTCAAAGACCAGGTCGACGCTGCCTCTGCTCCTTCCTCAACAGCACAGCAATGGTTTCACGACTTCAATGACTTGGAGGAGGAAAGCTCCGATCTTGAATATTCAGTGGACGCACTTCTTTTGCTACAGAAGTCTATGCTCGAAAAGCAATGGAATCTTTCCTTCGAGAAAAAAATATTTACGGATTCAACAATAAAAACAGCAACTAACAAGAGGATACCAGTCACTTGTTCTGGGGTATCTGCTCGCCACAGGAGAATGAGTTATAGGAGGAATGCTTTCAACTTAAACCGTTGTTTAACGCAACCTAGCACCAATAACTCTTTGAGACCAGTCATCAGTCCAGAGCTGCTTCAGAGTCGTTTAAAGGGTTATGTGAAGGGTGTTCTTAGTGAGGATTTGCTGACTCACACTGAGGTTGTGCGCCTGTCAAAGAAAATTAAAATTGGCCTTTCTGTTGAGGAACATAAATCAAGACTGAAGGAGAGACTGGGATGTGAGCCCTCTGATGAACAGCTTGCGACTTCATTGAGGATTTCCCGTGCTGAATTAAAGTCAAAGTTGATTGAATGTTCTTTGGCAAGAGAGAAGCTGGCAATGAGCAATGTTCGTCTGGTCATGTCCATTGCTCAAAAATATGATAATATGGGCGCTGAAATGGCTGACCTAATCCAGGGCGGGTTAATCGGACTATTGCGTGGGATTGAAAAATTTGATTCTTCAAAGGGGTTCAAAATTTCTACTTATGTTTACTGGTGGATACGTCAGGGTGTTTCAAGAGCACTGGTTGAAAATTCCAAAACCTTGAGACTGCCAACACATTTGCACGAGAGGTTAGGTTTAATCAGAAATGCAAAAATTAGACTGGAAGAGAAAGGAATAACTCCATCAATTGATAGAATCGCAGAAAGTCTGAATATGTCCAAAAAGAAAGTTAGGAATGCTACAGAGGCAATCAGCAAGGTTTTTTCACTTGATAGGGACGCATTCCCCTCTTTGAATGGACTTCCAGGAGAAACTCATCATAGTTACATTGCAGATAATCGCCTTGAGAACATCCCATGGACTGGGGTGGATGCGTGGGCACTCAAGGATGAAGTAAACAAGCTCATAAATATGATGCTTGGGGAACGGGAAAGAGAGATCATACGGCTTTACTATGGTCTGGATAATGAATGCCTTACATGGGAGGACATTAGTAAACGTATAGGATTGTCCAGAGAAAGGGTTAGGCAAGTTGGACTCGTTGCTCTAGAGAAACTGAAACATGCTGCAAGAAAAACCGAGATGGAGGCCTTGCTAGTCAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010109 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0051775 GO:0060255 GO:0065007 GO:0071214 GO:0071461 GO:0071478 GO:0071482 GO:0071704 GO:0080005 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

516

Amino Acids

58.37

Weight (kDa)

9.5

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r2	PF04542	277 - 344	1.6e-16	Sigma-70 region 2
Sigma70_r3	PF04539	355 - 425	9e-13	Sigma-70 region 3
Sigma70_r4	PF04545	453 - 501	2.1e-10	Sigma-70, region 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64860 AT1G64860
fragaria_vesca	FvH4_7g34280
malus_domestica	MD01G1240100.v1.1 MD07G1311500.v1.1
prunus_persica	Prupe.2G329700_v2.0.a1 Prupe.2G329700_v2.0.a1
pyrus_communis	pycom01g24680 pycom07g28370
rosa_chinensis	RchiOBHm_Chr1g0384631
rosa_laevigata	RLG00000026025
rosa_multiflora	Rmu_sc0012136.1_g000027
rosa_roxburghii	Rroxscaffold_4G00276510
rosa_samantha	Rh1AG474800 Rh1BG432900 Rh1CG446100 Rh1DG465500
rosa_wichuraiana	Rw1G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1301
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	2 cut(s)	159, 912
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	944, 969, 1027
AcuI	CTGAAG	2 cut(s)	572, 734
AfiI	CCNNNNNNNGG	4 cut(s)	907, 1301, 1420, 1458
AjnI	CCWGG	3 cut(s)	243, 906, 1243
AluBI	AGCT	8 cut(s)	14, 94, 215, 321, 583, 751, 826, 1342
AluI	AGCT	8 cut(s)	14, 94, 215, 321, 583, 751, 826, 1342
Alw21I	GWGCWC	1 cut(s)	1018
Alw26I	GTCTC	3 cut(s)	556, 715, 1036
AoxI	GGCC	4 cut(s)	6, 25, 682, 1527
ApeKI	GCWGC	4 cut(s)	14, 254, 583, 1505
ApoI	RAATTY	3 cut(s)	944, 969, 1027
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	660, 887
AsuHPI	GGTGA	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	1321
BalI	TGGCCA	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	235, 738
BauI	CACGAG	1 cut(s)	1061
Bbv12I	GWGCWC	1 cut(s)	1018
BbvI	GCAGC	3 cut(s)	241, 570, 1492
BccI	CCATC	2 cut(s)	1129, 1516
BceAI	ACGGC	1 cut(s)	1400
BciT130I	CCWGG	3 cut(s)	245, 908, 1245
BciVI	GTATCC	2 cut(s)	444, 987
BcoDI	GTCTC	3 cut(s)	556, 715, 1036
BfaI	CTAG	3 cut(s)	543, 1487, 1535
BfmI	CTRYAG	2 cut(s)	359, 1179
BfoI	RGCGCY	1 cut(s)	888
BfuI	GTATCC	2 cut(s)	444, 987
BisI	GCNGC	4 cut(s)	15, 255, 584, 1506
BlsI	GCNGC	4 cut(s)	16, 256, 585, 1507
Bme1390I	CCNGG	3 cut(s)	245, 908, 1245
BmrFI	CCNGG	3 cut(s)	245, 908, 1245
BmrI	ACTGGG	3 cut(s)	45, 734, 1311
BmsI	GCATC	2 cut(s)	1300, 1344
BmuI	ACTGGG	3 cut(s)	45, 734, 1311
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	1 cut(s)	208
BpuEI	CTTGAG	4 cut(s)	70, 1060, 1304, 1307
BsaBI	GATNNNNATC	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	907, 1295
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	4 cut(s)	907, 1301, 1420, 1458
Bse3DI	GCAATG	7 cut(s)	124, 290, 389, 837, 844, 858, 1266
Bse8I	GATNNNNATC	1 cut(s)	199
BseBI	CCWGG	3 cut(s)	245, 908, 1245
BseDI	CCNNGG	2 cut(s)	907, 1295
BseGI	GGATG	4 cut(s)	734, 1290, 1315, 1333
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	4 cut(s)	907, 1301, 1420, 1458
BseMI	GCAATG	7 cut(s)	124, 290, 389, 837, 844, 858, 1266
BseMII	CTCAG	1 cut(s)	639
BseRI	GAGGAG	4 cut(s)	49, 52, 55, 326
BseSI	GKGCMC	1 cut(s)	1321
BseXI	GCAGC	3 cut(s)	241, 570, 1492
BshFI	GGCC	4 cut(s)	8, 27, 684, 1529
BsiHKAI	GWGCWC	1 cut(s)	1018
BslFI	GGGAC	1 cut(s)	1229
BslI	CCNNNNNNNGG	4 cut(s)	907, 1301, 1420, 1458
BsmAI	GTCTC	3 cut(s)	556, 715, 1036
BsmFI	GGGAC	1 cut(s)	1229
BsmI	GAATGC	4 cut(s)	514, 1180, 1220, 1415
BsnI	GGCC	4 cut(s)	8, 27, 684, 1529
Bso31I	GGTCTC	1 cut(s)	556
Bsp1286I	GDGCHC	4 cut(s)	235, 738, 1018, 1321
Bsp143I	GATC	2 cut(s)	325, 1377
Bsp19I	CCATGG	1 cut(s)	1295
BspACI	CCGC	2 cut(s)	159, 912
BspANI	GGCC	4 cut(s)	8, 27, 684, 1529
BspCNI	CTCAG	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	556
BsrDI	GCAATG	7 cut(s)	124, 290, 389, 837, 844, 858, 1266
BssECI	CCNNGG	2 cut(s)	907, 1295
BssMI	GATC	2 cut(s)	325, 1377
BssSI	CACGAG	1 cut(s)	1061
BssT1I	CCWWGG	1 cut(s)	1295
Bst2BI	CACGAG	1 cut(s)	1061
Bst2UI	CCWGG	3 cut(s)	245, 908, 1245
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	3 cut(s)	35, 142, 1098
BstC8I	GCNNGC	3 cut(s)	481, 753, 828
BstDEI	CTNAG	2 cut(s)	623, 648
BstDSI	CCRYGG	1 cut(s)	1295
BstENI	CCTNNNNNAGG	1 cut(s)	905
BstF5I	GGATG	4 cut(s)	734, 1290, 1315, 1333
BstH2I	RGCGCY	1 cut(s)	888
BstHHI	GCGC	2 cut(s)	660, 887
BstKTI	GATC	2 cut(s)	328, 1380
BstMAI	GTCTC	3 cut(s)	556, 715, 1036
BstMBI	GATC	2 cut(s)	325, 1377
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 260, 379, 893, 1184, 1540
BstNI	CCWGG	3 cut(s)	245, 908, 1245
BstNSI	RCATGY	1 cut(s)	1505
BstSCI	CCNGG	3 cut(s)	243, 906, 1243
BstSFI	CTRYAG	2 cut(s)	359, 1179
BstSLI	GKGCMC	1 cut(s)	1321
BstV1I	GCAGC	3 cut(s)	241, 570, 1492
BsuI	GTATCC	2 cut(s)	444, 987
BsuRI	GGCC	4 cut(s)	8, 27, 684, 1529
BtgI	CCRYGG	1 cut(s)	1295
BtsCI	GGATG	4 cut(s)	734, 1290, 1315, 1333
BtsIMutI	CAGTG	3 cut(s)	345, 645, 1016
Cac8I	GCNNGC	3 cut(s)	481, 753, 828
CfoI	GCGC	2 cut(s)	660, 887
CseI	GACGC	3 cut(s)	260, 353, 1226
CsiI	ACCWGGT	1 cut(s)	243
CviAII	CATG	5 cut(s)	113, 853, 1296, 1419, 1502
DdeI	CTNAG	2 cut(s)	623, 648
DpnI	GATC	2 cut(s)	327, 1379
DpnII	GATC	2 cut(s)	325, 1377
DraI	TTTAAA	1 cut(s)	600
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	35, 142, 1098
EarI	CTCTTC	3 cut(s)	35, 142, 1098
Eco130I	CCWWGG	1 cut(s)	1295
Eco147I	AGGCCT	1 cut(s)	1529
Eco24I	GRGCYC	2 cut(s)	235, 738
Eco31I	GGTCTC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	572, 734
EcoNI	CCTNNNNNAGG	1 cut(s)	905
EcoRII	CCWGG	3 cut(s)	243, 906, 1243
EcoT14I	CCWWGG	1 cut(s)	1295
EcoT38I	GRGCYC	2 cut(s)	235, 738
ErhI	CCWWGG	1 cut(s)	1295
FaeI	CATG	5 cut(s)	116, 856, 1299, 1422, 1505
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	1229
FatI	CATG	5 cut(s)	112, 852, 1295, 1418, 1501
FauI	CCCGC	1 cut(s)	905
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	15, 255, 584, 1506
FokI	GGATG	4 cut(s)	741, 1277, 1322, 1340
FriOI	GRGCYC	2 cut(s)	235, 738
Fsp4HI	GCNGC	4 cut(s)	15, 255, 584, 1506
FspBI	CTAG	3 cut(s)	543, 1487, 1535
GlaI	GCGC	2 cut(s)	659, 886
GluI	GCNGC	4 cut(s)	15, 255, 584, 1506
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	888
HaeIII	GGCC	4 cut(s)	8, 27, 684, 1529
HgaI	GACGC	3 cut(s)	260, 353, 1226
HhaI	GCGC	2 cut(s)	660, 887
Hin1II	CATG	5 cut(s)	116, 856, 1299, 1422, 1505
Hin6I	GCGC	2 cut(s)	658, 885
HinP1I	GCGC	2 cut(s)	658, 885
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	8 cut(s)	148, 388, 419, 592, 640, 950, 1134, 1476
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	5 cut(s)	250, 343, 985, 1336, 1436
Hpy188I	TCNGA	7 cut(s)	79, 325, 591, 742, 923, 1082, 1149
Hpy8I	GTNNAC	5 cut(s)	250, 343, 985, 1336, 1436
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	5 cut(s)	127, 276, 406, 607, 709
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	2 cut(s)	997, 1438
HpyCH4V	TGCA	4 cut(s)	1060, 1088, 1271, 1508
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 260, 379, 893, 1184, 1540
HpyF3I	CTNAG	2 cut(s)	623, 648
HpySE526I	ACGT	2 cut(s)	997, 1438
Hsp92II	CATG	5 cut(s)	116, 856, 1299, 1422, 1505
HspAI	GCGC	2 cut(s)	658, 885
Kzo9I	GATC	2 cut(s)	325, 1377
LmnI	GCTCC	2 cut(s)	268, 326
Lsp1109I	GCAGC	3 cut(s)	241, 570, 1492
LweI	GCATC	2 cut(s)	1300, 1344
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	3 cut(s)	543, 1487, 1535
MaeII	ACGT	2 cut(s)	997, 1438
MaeIII	GTNAC	4 cut(s)	82, 154, 457, 1262
MalI	GATC	2 cut(s)	327, 1379
MboI	GATC	2 cut(s)	325, 1377
MboII	GAAGA	5 cut(s)	52, 129, 195, 945, 1115
MfeI	CAATTG	1 cut(s)	1125
MhlI	GDGCHC	4 cut(s)	235, 738, 1018, 1321
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	9 cut(s)	172, 672, 678, 782, 944, 969, 1027, 1092, 1125
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	601, 634, 1470
MmeI	TCCRAC	2 cut(s)	201, 1453
Mox20I	TGGCCA	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	8 cut(s)	521, 533, 599, 675, 785, 917, 1076, 1546
MslI	CAYNNNNRTG	3 cut(s)	105, 283, 1349
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	245, 908, 1245
MunI	CAATTG	1 cut(s)	1125
Mva1269I	GAATGC	4 cut(s)	514, 1180, 1220, 1415
MvaI	CCWGG	3 cut(s)	245, 908, 1245
MwoI	GCNNNNNNNGC	6 cut(s)	14, 260, 379, 893, 1184, 1540
NcoI	CCATGG	1 cut(s)	1295
NdeII	GATC	2 cut(s)	325, 1377
NlaIII	CATG	5 cut(s)	116, 856, 1299, 1422, 1505
NmuCI	GTSAC	3 cut(s)	82, 154, 457
NspI	RCATGY	1 cut(s)	1505
PceI	AGGCCT	1 cut(s)	1529
PctI	GAATGC	4 cut(s)	514, 1180, 1220, 1415
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	5 cut(s)	148, 388, 419, 950, 1134
PflFI	GACNNNGTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	1301
PfoI	TCCNGGA	1 cut(s)	1243
PkrI	GCNGC	4 cut(s)	16, 256, 585, 1507
PleI	GAGTC	3 cut(s)	600, 634, 1470
PpsI	GAGTC	3 cut(s)	600, 634, 1470
Psp6I	CCWGG	3 cut(s)	243, 906, 1243
PspGI	CCWGG	3 cut(s)	243, 906, 1243
PsyI	GACNNNGTC	1 cut(s)	245
RseI	CAYNNNNRTG	3 cut(s)	105, 283, 1349
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	8 cut(s)	521, 533, 599, 675, 785, 917, 1076, 1546
SatI	GCNGC	4 cut(s)	15, 255, 584, 1506
Sau3AI	GATC	2 cut(s)	325, 1377
SchI	GAGTC	3 cut(s)	601, 634, 1470
ScrFI	CCNGG	3 cut(s)	245, 908, 1245
SduI	GDGCHC	4 cut(s)	235, 738, 1018, 1321
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	1300, 1344
SfcI	CTRYAG	2 cut(s)	359, 1179
SmiMI	CAYNNNNRTG	3 cut(s)	105, 283, 1349
SmlI	CTYRAG	4 cut(s)	49, 1039, 1283, 1322
SmoI	CTYRAG	4 cut(s)	49, 1039, 1283, 1322
Sse9I	AATT	9 cut(s)	172, 672, 678, 782, 944, 969, 1027, 1092, 1125
SseBI	AGGCCT	1 cut(s)	1529
SsiI	CCGC	2 cut(s)	159, 912
SspI	AATATT	2 cut(s)	335, 411
SspMI	CTAG	3 cut(s)	543, 1487, 1535
StuI	AGGCCT	1 cut(s)	1529
StyD4I	CCNGG	3 cut(s)	243, 906, 1243
StyI	CCWWGG	1 cut(s)	1295
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	2 cut(s)	1000, 1441
TaqI	TCGA	4 cut(s)	211, 249, 375, 399
TasI	AATT	9 cut(s)	172, 672, 678, 782, 944, 969, 1027, 1092, 1125
TfiI	GAWTC	5 cut(s)	148, 388, 419, 950, 1134
Tru1I	TTAA	8 cut(s)	521, 533, 599, 675, 785, 917, 1076, 1546
Tru9I	TTAA	8 cut(s)	521, 533, 599, 675, 785, 917, 1076, 1546
TscAI	CASTG	3 cut(s)	345, 652, 1023
TseFI	GTSAC	3 cut(s)	82, 154, 457
TseI	GCWGC	4 cut(s)	14, 254, 583, 1505
Tsp45I	GTSAC	3 cut(s)	82, 154, 457
TspDTI	ATGAA	6 cut(s)	89, 189, 750, 759, 1344, 1422
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	345, 652, 1023
Tth111I	GACNNNGTC	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	1301
XagI	CCTNNNNNAGG	1 cut(s)	905
XapI	RAATTY	3 cut(s)	944, 969, 1027
XbaI	TCTAGA	1 cut(s)	1486
XceI	RCATGY	1 cut(s)	1505
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	3 cut(s)	543, 1487, 1535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.