Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013559

Physical Location & Seq

Genomic Coordinates Forward (+)

21560319 .. 21562981

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGATGGCCATAGCTGCTGTTATTGGCCTTACTACGGGGAAGATGCTCTTGAATTCCTCCTCCTCTTATAATTCAGATATCACAGAAAAACTCTTTCATCTCAATGACCACGCATTCTTACATTGCCATTTCTCTTCAACAAAGAATCTTCTCACTGCCAGAAAGTCTAATTCCAACTACACGAGTTCTAGATTTCCGTCTTCCAATCGACCCGACCACTCCAGTAGGGCTCTCAAAGAACATGTAGATGCTGCCTCTGGTCCTTCCTCAACCGCACAGCAATGGTTTCACAGCTTCAACGACCTGGTGGAGGAAAGCTCTGATCTTGAATATTCAGTGGACGCACTTCTTTTGCTACAGAAGTCTATGCTCGAAAAGCAATGGAATATTTCTTTTGAGAAAAAAGTATTTATGGATTCAACAATAAAAACAGCAACGAACAAGAGGATACCAGTCACTTGTTCTGGGGTATCCGCTCGCCGCAGGAGAATGAGTACTAGGAGGAATGCTTTCAGTGCAAATCGTTGTTTAACGCAACCTAGCACCAATAAGCCATTGAGGCCAGTCATGAGTCCAGAGCTGCTTCAGAATCGTTTAAAGGGTTATGCGAAGGGTGTTCTTAGTGAGGATTTGCTGACTCACAATGAGGTTGTACGCCTGTCAAGGAAAATTAAAATTGGCCTCTCTGTCGAGGAGCATAAATCAAGTTCCCGTGCTGAATTACTGTCAAAGTTGATCGAATGTTCTTTGGCAAGAGAGAAGCTGGCAATGAGCAATGTTCGTCTGGTCATGTCCATTGCTCAAAAATATGATAATATGGGTGCTGAAATGGGAATTGAGAAATTTGATTCTTCAAAGGGGTTCAAAATTTCTACTTATGTTTACTGGTGGATACGTCAGGTAATGCCAATACTTCCCCTTGAAATGGTAAATAACTTACTGTTGACGTTTATCACTCTGCTCTCTTGGCTGATATGTGATTCTTGTATTACATTTCAATATCAGAGAATCGCAGAAAGTCTGAATATGTCCAGAAAGAAAGTTAGGAATGCTACAGAGGTACTAAGTCTGCAGGCAATCAGTAAGGTTTTTTCACTTGATAGGGACGCATTCCCCTCTTTGAATGGACTTCCAGGAGAAACTCATGATAGTGTAAGTGTCGATTACACCACCTCAATTTCTATATTGCAGGATGAAGTAAACAAGCTCATAAATATGATGCTCGGGGATCGGGAGAGAGAGATCATAAGGCTTTACTATGGTCTGGATAATGAAGGTCTTACATGGGAGGACATTAGCAAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010109 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0051775 GO:0060255 GO:0065007 GO:0071214 GO:0071461 GO:0071478 GO:0071482 GO:0071704 GO:0080005 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

436

Amino Acids

49.35

Weight (kDa)

9.2

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64860 AT1G64860
fragaria_vesca	FvH4_7g34280
malus_domestica	MD01G1240100.v1.1 MD07G1311500.v1.1
prunus_persica	Prupe.2G329700_v2.0.a1 Prupe.2G329700_v2.0.a1
pyrus_communis	pycom01g24680 pycom07g28370
rosa_chinensis	RchiOBHm_Chr1g0384631
rosa_laevigata	RLG00000026025
rosa_multiflora	Rmu_sc0012136.1_g000027
rosa_roxburghii	Rroxscaffold_4G00276510
rosa_samantha	Rh1AG474800 Rh1BG432900 Rh1CG446100 Rh1DG465500
rosa_wichuraiana	Rw1G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AccBSI	CCGCTC	1 cut(s)	476
AciI	CCGC	3 cut(s)	273, 474, 481
AclWI	GGATC	1 cut(s)	1236
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	52, 842, 867
AcuI	CTGAAG	1 cut(s)	569
AfaI	GTAC	3 cut(s)	496, 654, 1062
AfiI	CCNNNNNNNGG	3 cut(s)	34, 310, 925
AflIII	ACRYGT	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	303, 1132
AluBI	AGCT	6 cut(s)	14, 294, 318, 580, 763, 1207
AluI	AGCT	6 cut(s)	14, 294, 318, 580, 763, 1207
AlwI	GGATC	1 cut(s)	1236
Ama87I	CYCGRG	1 cut(s)	1223
AoxI	GGCC	4 cut(s)	6, 25, 560, 679
ApeKI	GCWGC	3 cut(s)	14, 251, 580
ApoI	RAATTY	3 cut(s)	52, 842, 867
Asp700I	GAANNNNTTC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	1223
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	238, 567
BciT130I	CCWGG	2 cut(s)	305, 1134
BciVI	GTATCC	3 cut(s)	441, 481, 885
BfaI	CTAG	3 cut(s)	189, 498, 540
BfmI	CTRYAG	3 cut(s)	356, 1053, 1070
BfuI	GTATCC	3 cut(s)	441, 481, 885
BglI	GCCNNNNNGGC	1 cut(s)	559
BisI	GCNGC	4 cut(s)	15, 252, 481, 581
BlsI	GCNGC	4 cut(s)	16, 253, 482, 582
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	305, 1134
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	1223
BmgT120I	GGNCC	1 cut(s)	260
BmrFI	CCNGG	2 cut(s)	305, 1134
BmsI	GCATC	3 cut(s)	33, 238, 1209
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 310, 925
Bse1I	ACTGG	4 cut(s)	222, 452, 563, 890
Bse3DI	GCAATG	6 cut(s)	121, 287, 386, 774, 781, 795
BseBI	CCWGG	2 cut(s)	305, 1134
BseGI	GGATG	1 cut(s)	1198
BseLI	CCNNNNNNNGG	3 cut(s)	34, 310, 925
BseMI	GCAATG	6 cut(s)	121, 287, 386, 774, 781, 795
BseNI	ACTGG	4 cut(s)	222, 452, 563, 890
BseRI	GAGGAG	3 cut(s)	49, 52, 707
BseXI	GCAGC	2 cut(s)	238, 567
BshFI	GGCC	4 cut(s)	8, 27, 562, 681
BsiHKCI	CYCGRG	1 cut(s)	1223
BslFI	GGGAC	1 cut(s)	1118
BslI	CCNNNNNNNGG	3 cut(s)	34, 310, 925
BsmFI	GGGAC	1 cut(s)	1118
BsmI	GAATGC	4 cut(s)	113, 511, 1054, 1109
BsnI	GGCC	4 cut(s)	8, 27, 562, 681
BsoBI	CYCGRG	1 cut(s)	1223
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	322, 735, 1228, 1242
BspACI	CCGC	3 cut(s)	273, 474, 481
BspANI	GGCC	4 cut(s)	8, 27, 562, 681
BspHI	TCATGA	2 cut(s)	567, 1144
BspMAI	CTGCAG	1 cut(s)	1074
BspPI	GGATC	1 cut(s)	1236
BsrBI	CCGCTC	1 cut(s)	476
BsrDI	GCAATG	6 cut(s)	121, 287, 386, 774, 781, 795
BsrI	ACTGG	4 cut(s)	222, 452, 563, 890
BssMI	GATC	4 cut(s)	322, 735, 1228, 1242
BssSI	CACGAG	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	305, 1134
Bst4CI	ACNGT	3 cut(s)	726, 942, 1305
Bst6I	CTCTTC	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	478, 765, 1074
BstDEI	CTNAG	2 cut(s)	620, 1064
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	1198
BstKTI	GATC	4 cut(s)	325, 738, 1231, 1245
BstMBI	GATC	4 cut(s)	322, 735, 1228, 1242
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 376, 515, 559, 967
BstNI	CCWGG	2 cut(s)	305, 1134
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	303, 1132
BstSFI	CTRYAG	3 cut(s)	356, 1053, 1070
BstV1I	GCAGC	2 cut(s)	238, 567
BstV2I	GAAGAC	1 cut(s)	192
BsuI	GTATCC	3 cut(s)	441, 481, 885
BsuRI	GGCC	4 cut(s)	8, 27, 562, 681
BtsCI	GGATG	1 cut(s)	1198
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	153, 342, 520
Cac8I	GCNNGC	3 cut(s)	478, 765, 1074
CciI	TCATGA	2 cut(s)	567, 1144
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	2 cut(s)	350, 1115
CsiI	ACCWGGT	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	495, 653, 1061
CviAII	CATG	5 cut(s)	242, 568, 790, 1145, 1284
CviQI	GTAC	3 cut(s)	495, 653, 1061
DdeI	CTNAG	2 cut(s)	620, 1064
DpnI	GATC	4 cut(s)	324, 737, 1230, 1244
DpnII	GATC	4 cut(s)	322, 735, 1228, 1242
DraI	TTTAAA	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	1223
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	303, 1132
EcoRV	GATATC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	5 cut(s)	245, 571, 793, 1148, 1287
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	1118
FatI	CATG	5 cut(s)	241, 567, 789, 1144, 1283
Fnu4HI	GCNGC	4 cut(s)	15, 252, 481, 581
FokI	GGATG	1 cut(s)	1205
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	15, 252, 481, 581
FspBI	CTAG	3 cut(s)	189, 498, 540
GluI	GCNGC	4 cut(s)	15, 252, 481, 581
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	4 cut(s)	8, 27, 562, 681
HgaI	GACGC	2 cut(s)	350, 1115
Hin1II	CATG	5 cut(s)	245, 571, 793, 1148, 1287
HincII	GTYRAC	1 cut(s)	945
HindII	GTYRAC	1 cut(s)	945
HinfI	GANTC	8 cut(s)	145, 416, 571, 589, 637, 848, 980, 1008
Hpy166II	GTNNAC	4 cut(s)	340, 883, 945, 1201
Hpy188I	TCNGA	5 cut(s)	76, 322, 588, 1005, 1023
Hpy188III	TCNNGA	9 cut(s)	49, 189, 326, 568, 575, 1032, 1145, 1232, 1265
Hpy8I	GTNNAC	4 cut(s)	340, 883, 945, 1201
HpyAV	CCTTC	3 cut(s)	273, 604, 1268
HpyCH4III	ACNGT	3 cut(s)	726, 942, 1305
HpyCH4IV	ACGT	2 cut(s)	895, 947
HpyCH4V	TGCA	3 cut(s)	518, 1072, 1189
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 376, 515, 559, 967
HpyF3I	CTNAG	2 cut(s)	620, 1064
HpySE526I	ACGT	2 cut(s)	895, 947
Hsp92II	CATG	5 cut(s)	245, 571, 793, 1148, 1287
Kzo9I	GATC	4 cut(s)	322, 735, 1228, 1242
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	2 cut(s)	238, 567
LweI	GCATC	3 cut(s)	33, 238, 1209
MabI	ACCWGGT	1 cut(s)	303
MaeI	CTAG	3 cut(s)	189, 498, 540
MaeII	ACGT	2 cut(s)	895, 947
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	4 cut(s)	324, 737, 1230, 1244
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	4 cut(s)	322, 735, 1228, 1242
MboII	GAAGA	5 cut(s)	52, 126, 140, 192, 843
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	8
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	580, 631
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	3 cut(s)	530, 596, 672
MslI	CAYNNNNRTG	5 cut(s)	102, 246, 280, 1149, 1214
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	305, 1134
Mva1269I	GAATGC	4 cut(s)	113, 511, 1054, 1109
MvaI	CCWGG	2 cut(s)	305, 1134
MwoI	GCNNNNNNNGC	5 cut(s)	14, 376, 515, 559, 967
NdeII	GATC	4 cut(s)	322, 735, 1228, 1242
NlaIII	CATG	5 cut(s)	245, 571, 793, 1148, 1287
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	245
PagI	TCATGA	2 cut(s)	567, 1144
PciI	ACATGT	1 cut(s)	241
PctI	GAATGC	4 cut(s)	113, 511, 1054, 1109
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	6 cut(s)	145, 416, 589, 848, 980, 1008
PfoI	TCCNGGA	1 cut(s)	1132
PkrI	GCNGC	4 cut(s)	16, 253, 482, 582
PleI	GAGTC	2 cut(s)	579, 631
PpsI	GAGTC	2 cut(s)	579, 631
PscI	ACATGT	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	303, 1132
PspGI	CCWGG	2 cut(s)	303, 1132
PspPI	GGNCC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	1074
RsaI	GTAC	3 cut(s)	496, 654, 1062
RsaNI	GTAC	3 cut(s)	495, 653, 1061
RseI	CAYNNNNRTG	5 cut(s)	102, 246, 280, 1149, 1214
SaqAI	TTAA	3 cut(s)	530, 596, 672
SatI	GCNGC	4 cut(s)	15, 252, 481, 581
Sau3AI	GATC	4 cut(s)	322, 735, 1228, 1242
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	2 cut(s)	580, 631
ScrFI	CCNGG	2 cut(s)	305, 1134
SduI	GDGCHC	1 cut(s)	232
SexAI	ACCWGGT	1 cut(s)	303
SfaNI	GCATC	3 cut(s)	33, 238, 1209
SfcI	CTRYAG	3 cut(s)	356, 1053, 1070
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	5 cut(s)	102, 246, 280, 1149, 1214
SsiI	CCGC	3 cut(s)	273, 474, 481
SspI	AATATT	2 cut(s)	332, 388
SspMI	CTAG	3 cut(s)	189, 498, 540
StyD4I	CCNGG	2 cut(s)	303, 1132
TaaI	ACNGT	3 cut(s)	726, 942, 1305
TaiI	ACGT	2 cut(s)	898, 950
TaqI	TCGA	5 cut(s)	208, 372, 690, 738, 1161
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	6 cut(s)	145, 416, 589, 848, 980, 1008
Tru1I	TTAA	3 cut(s)	530, 596, 672
Tru9I	TTAA	3 cut(s)	530, 596, 672
TscAI	CASTG	3 cut(s)	160, 342, 520
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	3 cut(s)	14, 251, 580
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	86, 1209, 1287
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	3 cut(s)	160, 342, 520
VpaK11BI	GGWCC	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	3 cut(s)	52, 842, 867
XbaI	TCTAGA	1 cut(s)	188
XceI	RCATGY	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	3 cut(s)	189, 498, 540
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.