Prupe.2G329700_v2.0.a1

RNA polymerase sigma factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
30292770 .. 30297772
5003 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G329700.1

Sequence Viewer

Length: 1539 bp
ATGATGGCCACAGCTGCTGTTATTGGGCTTAGTACGGGGAAGAGGCTGTTGAATTCTTCCTTCTATTATTCAGATATCACAGAAAAGCTCTTTCATCTCAATGATCATCATGGGTTTTTACATTGCCATTTCTCTTCAACAAAGAATGTTGTCACTGCCAGAAAGCCTTCCAATTGCAGTTCCAGATTTCCATCTTCGAATCGACCTCAACAGTCCATTAGGGCTCTGAAAGAACATGTACAAACTGCCTCTGCTCCTTCATCAGCCACGCAGCAATGGTTTCAGGAGCTCAACGACTTGGAGGAGGAAAGCTCTGATCTTGAATATTCAGTGGAAGCACTTCTTTTGCTACAGAAGTCTATGCTGGAAAAACAATGGAATCTTTCTTTTGAGAAAAAAGTATTAAGGGATTCAACATCAAAAACAACTGACAAGAAGATACCAGTCACTTGTTCTGGGGTATCTGCTCGTCAAAGGAGGATGACTAGTACCAAGAGGAAAACTTTTAACAAAAGCACTTGCGTAATGCACCCTAGCACCAATAAGCCTTTGAGAGCCATTGTCAGTCCGGAGCTGCTTCAGAATCATGTAAAGGGTTATGTGAAGGGAGTTCTAAGTGAGGATTTGCTGACTCACACTGAGGTTGTACGCCTGTCAAAGAAAATTAAAGTTGGTCTTTCCGTAGAGGAGCATAAATCAAGACTGAAGGAGAGATTGGGATGTGAGCCCTCTGATGAACAACTTGCAACTTCCTTGAGGATTTCCCGTGCTCAATTACAGTCGAAGTTGATTGAATGTAAATTGGCAAGAGAGAAGCTGGCAATGAGCAATGTTCGTTTGGTCATGTCCATTGCTCAGAGATATGATAATATGGGCGCTGAAATGGCTGACCTTATCCAGGGTGGGTTAATCGGACTACTGCGTGGGATTGAGAAATTTGATTCTTCAAAGGGGTTCAAAATTTCTACATATGTTTACTGGTGGATACGTCAGGGTGTTTCAAGAGCACTGGTTGAAAATTCCAGAACCTTAAGACTGCCTACACATTTGCATGAGAGGTTAGGTTTAATCAGAAATGCAAAAATTAGATTGGAAGAGAAAGGAATAACTCCATCAATTGATAGGATCGCAGAAAGCCTGAACATGTCCAAAAAGAAAGTTAGGAATGCTACAGAGGCAATCAGTAAGGTTTTCTCACTTGATAGGGACGCATTCCCCTCTTTAAATGGCCTTCCAGGAGAAACTCATCATAGTTACATTGCAGATAATCGCCTTGAGAACATCCCATGGCATGGGGTGGATGCGTGGGCATTGAAGGAAGAAGTAAGCAAGCTCATAAATATGATGCTTGGGGAACGGGAGAAAGAGATCATACAGCTTTATTATGGTCTGGAAAATGAATGTCTTACTTGGGAAGACATTAGTAAACGTATAGGATTGTCCAGAGAAAGAGTTAGGCAAGTTGGACTTGTTGCTCTAGAGAAACTGAAACATGCTGCGAGGAAAAGAGAGATGGAGGCCATGCTACTGAAACATTAA

Protein Analysis

513

Amino Acids

58.26

Weight (kDa)

9.61

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013559)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1292
AccIII TCCGGA 1 cut(s) 568
AclWI GGATC 1 cut(s) 1133
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 4 cut(s) 52, 935, 960, 1018
AcuI CTGAAG 2 cut(s) 563, 725
AfaI GTAC 4 cut(s) 34, 240, 490, 648
AfiI CCNNNNNNNGG 2 cut(s) 898, 1292
AflII CTTAAG 1 cut(s) 1030
AflIII ACRYGT 2 cut(s) 235, 1143
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 2 cut(s) 897, 1234
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AluBI AGCT 8 cut(s) 14, 88, 289, 312, 574, 817, 1333, 1378
AluI AGCT 8 cut(s) 14, 88, 289, 312, 574, 817, 1333, 1378
Alw21I GWGCWC 3 cut(s) 291, 772, 1009
AlwI GGATC 1 cut(s) 1133
AlwNI CAGNNNCTG 1 cut(s) 17
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 3 cut(s) 6, 1228, 1518
ApeKI GCWGC 4 cut(s) 14, 271, 574, 1496
ApoI RAATTY 4 cut(s) 52, 935, 960, 1018
Asp700I GAANNNNTTC 2 cut(s) 166, 339
AspLEI GCGC 1 cut(s) 878
AsuII TTCGAA 1 cut(s) 197
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 3 cut(s) 226, 291, 729
BbsI GAAGAC 1 cut(s) 1422
Bbv12I GWGCWC 3 cut(s) 291, 772, 1009
BbvI GCAGC 3 cut(s) 283, 561, 1483
BccI CCATC 3 cut(s) 199, 1120, 1507
BciT130I CCWGG 2 cut(s) 899, 1236
BciVI GTATCC 1 cut(s) 978
BclI TGATCA 1 cut(s) 103
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 3 cut(s) 486, 534, 1478
BfmI CTRYAG 2 cut(s) 350, 1170
BfoI RGCGCY 1 cut(s) 879
BfrI CTTAAG 1 cut(s) 1030
BfuI GTATCC 1 cut(s) 978
BisI GCNGC 4 cut(s) 15, 272, 575, 1497
BlsI GCNGC 4 cut(s) 16, 273, 576, 1498
Bme1390I CCNGG 2 cut(s) 899, 1236
BmrFI CCNGG 2 cut(s) 899, 1236
BmsI GCATC 2 cut(s) 1291, 1335
BpiI GAAGAC 1 cut(s) 1422
BplI GAGNNNNNCTC 2 cut(s) 296, 328
Bpu14I TTCGAA 1 cut(s) 197
BpuEI CTTGAG 2 cut(s) 775, 1295
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 898, 1286
BsaWI WCCGGW 1 cut(s) 568
Bsc4I CCNNNNNNNGG 2 cut(s) 898, 1292
Bse1I ACTGG 3 cut(s) 443, 983, 1014
Bse3DI GCAATG 6 cut(s) 121, 281, 828, 835, 849, 1257
Bse8I GATNNNNATC 1 cut(s) 190
BseAI TCCGGA 1 cut(s) 568
BseBI CCWGG 2 cut(s) 899, 1236
BseDI CCNNGG 2 cut(s) 898, 1286
BseGI GGATG 4 cut(s) 486, 725, 1281, 1306
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 898, 1292
BseMI GCAATG 6 cut(s) 121, 281, 828, 835, 849, 1257
BseMII CTCAG 2 cut(s) 630, 869
BseNI ACTGG 3 cut(s) 443, 983, 1014
BseRI GAGGAG 2 cut(s) 317, 701
BseXI GCAGC 3 cut(s) 283, 561, 1483
BshFI GGCC 3 cut(s) 8, 1230, 1520
BsiHKAI GWGCWC 3 cut(s) 291, 772, 1009
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 1220
BslI CCNNNNNNNGG 2 cut(s) 898, 1292
BsmFI GGGAC 1 cut(s) 1220
BsmI GAATGC 2 cut(s) 1171, 1211
BsnI GGCC 3 cut(s) 8, 1230, 1520
Bsp119I TTCGAA 1 cut(s) 197
Bsp1286I GDGCHC 5 cut(s) 226, 291, 729, 772, 1009
Bsp13I TCCGGA 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 4 cut(s) 103, 316, 1125, 1368
Bsp19I CCATGG 1 cut(s) 1286
BspANI GGCC 3 cut(s) 8, 1230, 1520
BspCNI CTCAG 2 cut(s) 631, 868
BspEI TCCGGA 1 cut(s) 568
BspPI GGATC 1 cut(s) 1133
BspT104I TTCGAA 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 1030
BsrDI GCAATG 6 cut(s) 121, 281, 828, 835, 849, 1257
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 3 cut(s) 443, 983, 1014
BssECI CCNNGG 2 cut(s) 898, 1286
BssMI GATC 4 cut(s) 103, 316, 1125, 1368
BssT1I CCWWGG 1 cut(s) 1286
Bst2UI CCWGG 2 cut(s) 899, 1236
Bst4CI ACNGT 2 cut(s) 213, 780
Bst6I CTCTTC 3 cut(s) 35, 139, 1089
BstAFI CTTAAG 1 cut(s) 1030
BstAUI TGTACA 1 cut(s) 238
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 819, 1331
BstDEI CTNAG 4 cut(s) 29, 614, 639, 855
BstDSI CCRYGG 1 cut(s) 1286
BstENI CCTNNNNNAGG 1 cut(s) 896
BstF5I GGATG 4 cut(s) 486, 725, 1281, 1306
BstH2I RGCGCY 1 cut(s) 879
BstHHI GCGC 1 cut(s) 878
BstKTI GATC 4 cut(s) 106, 319, 1128, 1371
BstMBI GATC 4 cut(s) 103, 316, 1125, 1368
BstMWI GCNNNNNNNGC 3 cut(s) 14, 884, 1175
BstNI CCWGG 2 cut(s) 899, 1236
BstNSI RCATGY 3 cut(s) 239, 1147, 1496
BstSCI CCNGG 2 cut(s) 897, 1234
BstSFI CTRYAG 2 cut(s) 350, 1170
BstV1I GCAGC 3 cut(s) 283, 561, 1483
BstV2I GAAGAC 1 cut(s) 1422
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 3 cut(s) 8, 1230, 1520
BtgI CCRYGG 1 cut(s) 1286
BtsCI GGATG 4 cut(s) 486, 725, 1281, 1306
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 4 cut(s) 153, 336, 636, 1007
Cac8I GCNNGC 2 cut(s) 819, 1331
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 878
CseI GACGC 1 cut(s) 1217
Csp6I GTAC 4 cut(s) 33, 239, 489, 647
CviQI GTAC 4 cut(s) 33, 239, 489, 647
DdeI CTNAG 4 cut(s) 29, 614, 639, 855
DpnI GATC 4 cut(s) 105, 318, 1127, 1370
DpnII GATC 4 cut(s) 103, 316, 1125, 1368
DraI TTTAAA 1 cut(s) 1224
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 35, 139, 1089
EarI CTCTTC 3 cut(s) 35, 139, 1089
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 1286
Eco24I GRGCYC 3 cut(s) 226, 291, 729
Eco32I GATATC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 563, 725
EcoICRI GAGCTC 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 896
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 897, 1234
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 1286
EcoT38I GRGCYC 3 cut(s) 226, 291, 729
ErhI CCWWGG 1 cut(s) 1286
FalI AAGNNNNNCTT 6 cut(s) 327, 359, 660, 692, 1452, 1484
FaqI GGGAC 1 cut(s) 1220
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 15, 272, 575, 1497
FokI GGATG 4 cut(s) 493, 732, 1268, 1313
FriOI GRGCYC 3 cut(s) 226, 291, 729
Fsp4HI GCNGC 4 cut(s) 15, 272, 575, 1497
FspBI CTAG 3 cut(s) 486, 534, 1478
GlaI GCGC 1 cut(s) 877
GluI GCNGC 4 cut(s) 15, 272, 575, 1497
HaeII RGCGCY 1 cut(s) 879
HaeIII GGCC 3 cut(s) 8, 1230, 1520
HapII CCGG 1 cut(s) 569
HgaI GACGC 1 cut(s) 1217
HhaI GCGC 1 cut(s) 878
Hin6I GCGC 1 cut(s) 876
HinP1I GCGC 1 cut(s) 876
HinfI GANTC 6 cut(s) 199, 379, 410, 583, 631, 941
HpaII CCGG 1 cut(s) 569
Hpy166II GTNNAC 2 cut(s) 976, 1427
Hpy188I TCNGA 8 cut(s) 73, 228, 316, 582, 733, 858, 914, 1073
Hpy8I GTNNAC 2 cut(s) 976, 1427
HpyAV CCTTC 7 cut(s) 70, 177, 267, 598, 700, 1241, 1309
HpyCH4III ACNGT 2 cut(s) 213, 780
HpyCH4IV ACGT 2 cut(s) 988, 1429
HpyCH4V TGCA 6 cut(s) 177, 529, 746, 1051, 1079, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 884, 1175
HpyF3I CTNAG 4 cut(s) 29, 614, 639, 855
HpySE526I ACGT 2 cut(s) 988, 1429
HspAI GCGC 1 cut(s) 876
Kpn2I TCCGGA 1 cut(s) 568
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 4 cut(s) 103, 316, 1125, 1368
LmnI GCTCC 4 cut(s) 259, 286, 571, 688
Lsp1109I GCAGC 3 cut(s) 283, 561, 1483
LweI GCATC 2 cut(s) 1291, 1335
MaeI CTAG 3 cut(s) 486, 534, 1478
MaeII ACGT 2 cut(s) 988, 1429
MaeIII GTNAC 3 cut(s) 151, 445, 1253
MalI GATC 4 cut(s) 105, 318, 1127, 1370
MboI GATC 4 cut(s) 103, 316, 1125, 1368
MboII GAAGA 9 cut(s) 48, 52, 126, 186, 448, 936, 1106, 1331, 1427
MfeI CAATTG 2 cut(s) 172, 1116
MhlI GDGCHC 5 cut(s) 226, 291, 729, 772, 1009
MlsI TGGCCA 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 1444
Mox20I TGGCCA 1 cut(s) 8
MroI TCCGGA 1 cut(s) 568
MroXI GAANNNNTTC 2 cut(s) 166, 339
MscI TGGCCA 1 cut(s) 8
MseI TTAA 8 cut(s) 404, 507, 666, 908, 1031, 1067, 1223, 1537
MslI CAYNNNNRTG 3 cut(s) 99, 1050, 1340
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 1030
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 2 cut(s) 899, 1236
MunI CAATTG 2 cut(s) 172, 1116
Mva1269I GAATGC 2 cut(s) 1171, 1211
MvaI CCWGG 2 cut(s) 899, 1236
MwoI GCNNNNNNNGC 3 cut(s) 14, 884, 1175
NcoI CCATGG 1 cut(s) 1286
NdeI CATATG 1 cut(s) 970
NdeII GATC 4 cut(s) 103, 316, 1125, 1368
NmuCI GTSAC 2 cut(s) 151, 445
NspI RCATGY 3 cut(s) 239, 1147, 1496
NspV TTCGAA 1 cut(s) 197
PciI ACATGT 2 cut(s) 235, 1143
PctI GAATGC 2 cut(s) 1171, 1211
PdmI GAANNNNTTC 2 cut(s) 166, 339
PfeI GAWTC 5 cut(s) 199, 379, 410, 583, 941
PflMI CCANNNNNTGG 1 cut(s) 1292
PfoI TCCNGGA 1 cut(s) 1234
PkrI GCNGC 4 cut(s) 16, 273, 576, 1498
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PscI ACATGT 2 cut(s) 235, 1143
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 897, 1234
PspGI CCWGG 2 cut(s) 897, 1234
PstNI CAGNNNCTG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 4 cut(s) 34, 240, 490, 648
RsaNI GTAC 4 cut(s) 33, 239, 489, 647
RseI CAYNNNNRTG 3 cut(s) 99, 1050, 1340
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 8 cut(s) 404, 507, 666, 908, 1031, 1067, 1223, 1537
SatI GCNGC 4 cut(s) 15, 272, 575, 1497
Sau3AI GATC 4 cut(s) 103, 316, 1125, 1368
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 2 cut(s) 899, 1236
SduI GDGCHC 5 cut(s) 226, 291, 729, 772, 1009
SfaNI GCATC 2 cut(s) 1291, 1335
SfcI CTRYAG 2 cut(s) 350, 1170
SfuI TTCGAA 1 cut(s) 197
SmiMI CAYNNNNRTG 3 cut(s) 99, 1050, 1340
SmlI CTYRAG 3 cut(s) 754, 1030, 1274
SmoI CTYRAG 3 cut(s) 754, 1030, 1274
SpeI ACTAGT 1 cut(s) 485
SspI AATATT 1 cut(s) 326
SspMI CTAG 3 cut(s) 486, 534, 1478
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 897, 1234
StyI CCWWGG 1 cut(s) 1286
TaaI ACNGT 2 cut(s) 213, 780
TaiI ACGT 2 cut(s) 991, 1432
TaqI TCGA 3 cut(s) 197, 202, 782
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 5 cut(s) 199, 379, 410, 583, 941
Tru1I TTAA 8 cut(s) 404, 507, 666, 908, 1031, 1067, 1223, 1537
Tru9I TTAA 8 cut(s) 404, 507, 666, 908, 1031, 1067, 1223, 1537
TscAI CASTG 4 cut(s) 160, 336, 643, 1014
TseFI GTSAC 2 cut(s) 151, 445
TseI GCWGC 4 cut(s) 14, 271, 574, 1496
Tsp45I GTSAC 2 cut(s) 151, 445
TspDTI ATGAA 4 cut(s) 83, 249, 750, 1413
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 4 cut(s) 160, 336, 643, 1014
Van91I CCANNNNNTGG 1 cut(s) 1292
Vha464I CTTAAG 1 cut(s) 1030
XagI CCTNNNNNAGG 1 cut(s) 896
XapI RAATTY 4 cut(s) 52, 935, 960, 1018
XbaI TCTAGA 1 cut(s) 1477
XceI RCATGY 3 cut(s) 239, 1147, 1496
XmnI GAANNNNTTC 2 cut(s) 166, 339
XspI CTAG 3 cut(s) 486, 534, 1478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.