AT1G65030

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015485
Physical Location & Seq
Forward (+)
24156672 .. 24158675
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65030.1

Sequence Viewer

Length: 1038 bp
ATGAGTATCATCGCAGGCTCCTACGAGAGATTCATTTGGGGTTTCAAGCTTAAACCCACGAAGCACGACGCCGAATCTCAAACCCTAACTCTCTCCCCTCTCTTCTCCTACCCTTCCCACATCTCCCCAATCACCACCGTCGCTTGTTCCGGTCCCGCCGCAGCTTCCGGCGGCTCCGACGATACAATCCACCTCTACGACCTTCCCTCCGCTTCTTCCCTCGGCTCTCTCCTTGACCACAATCACGCAGCTTCAATCACCGCTCTCTCCTTCTACACACCTTCTTCACTCTCCTTCCCTCGTAATCTAATCTCCGCCGCCGCAGATGGCTCCGTTGCTATATTCGATACTGATCCTTTTGTTTTGCTTAAGTCGTTTCGTCCTCATAAGAAAGCGGTTAATGATTTAGCGATTCATCCTTCAGGGAAGCTTGCTTTAGCTGTTTATCGTGATGAGTTCTTTGCGATGTTGAATTTAGTTAGAGGAAAGAGGAGTTTTTGTTGTAGGTTAGGTCATGAAGCTAGTCTTGTGAAATTTGATCCTAGTGGTGAAAGGTTTTACATGGTTGTGAGTAATAAAGTTGGAGTTCATCAGTCTGAAGATGCTAAGCTTCTTCTTGAGCTCGAGAATCCGAGCCGCAAGCGTATTCTCTGTGCTACTCCTGGAGAGAGTGGAACTCTGTTCACAGGTGGTGAGGATCGGGCTATAACAGCTTGGGATACAAATAGTGGGAAGCTTGCATATTCCATAGAAGATGCTCACCCAGCTCGAATCAAAGGTATTGTTGTGCTTACCAGGAATGATAGTGACGGCTCCTTGGAAGATCCATACTTGATTGGTTCTGCATCGTCTGATGGGATCATACGTGTTTGGGACGTGCGAATGGCGGCTAAAGAAAATACAAAACCATTAGCCGAGACAAATACTAAATCAAGGCTTACTTGTCTTGCCGGGTCAGCTCTTAAATCTATGAGACGGCCACAGATTGGAAAGCAGGAACCTCAGAAGGTAGACGAAGAGCATGAGGACTCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0022613 GO:0042254 GO:0042273 GO:0044085 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

345

Amino Acids

37.45

Weight (kDa)

6.42

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 37 - 151 4.9e-08 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 47 - 183 7.7e-14 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 48 - 251 5.6e-14 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 51 - 163 2.6e-08 WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 55 - 191 3.2e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st PF25173 193 - 297 1.5e-06 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 218 - 297 2.9e-06 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65030
fragaria_vesca FvH4_3g05180
malus_domestica MD05G1280700.v1.1 MD10G1259100.v1.1
prunus_persica Prupe.4G084200_v2.0.a1
pyrus_communis pycom10g21560
rosa_chinensis RchiOBHm_Chr5g0014571
rosa_laevigata RLG00000032129
rosa_multiflora Rmu_co8518221.1_g000002 Rmu_sc0000120.1_g000004
rosa_roxburghii Rroxscaffold_1G00061910
rosa_rugosa Rorug05G0019500
rosa_samantha Rh5AG114700 Rh5BG111600 Rh5CG123100 Rh5DG111000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 986
AccBSI CCGCTC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 1011
AclWI GGATC 5 cut(s) 347, 533, 705, 818, 866
AcoI YGGCCR 1 cut(s) 977
AcsI RAATTY 2 cut(s) 472, 533
AcuI CTGAAG 2 cut(s) 405, 618
AcyI GRCGYC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 986
AflII CTTAAG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 865
AgsI TTSAA 3 cut(s) 46, 255, 472
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 2 cut(s) 661, 794
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 2 cut(s) 911, 967
AlwI GGATC 5 cut(s) 347, 533, 705, 818, 866
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 1 cut(s) 977
ApeKI GCWGC 2 cut(s) 161, 248
ApoI RAATTY 2 cut(s) 472, 533
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 952
AsuHPI GGTGA 5 cut(s) 124, 250, 560, 704, 752
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 173, 260
BccI CCATC 2 cut(s) 320, 848
BceAI ACGGC 2 cut(s) 826, 992
BciT130I CCWGG 2 cut(s) 663, 796
BciVI GTATCC 1 cut(s) 712
BcnI CCSGG 1 cut(s) 952
BcoDI GTCTC 2 cut(s) 911, 967
BfaI CTAG 2 cut(s) 522, 543
BfrI CTTAAG 1 cut(s) 368
BfuI GTATCC 1 cut(s) 712
BisI GCNGC 8 cut(s) 159, 162, 172, 249, 318, 321, 637, 888
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 8 cut(s) 160, 163, 173, 250, 319, 322, 638, 889
Bme1390I CCNGG 3 cut(s) 663, 796, 952
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 623
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 6 cut(s) 19, 154, 175, 331, 814, 999
BmrFI CCNGG 3 cut(s) 663, 796, 952
BmsI GCATC 3 cut(s) 592, 745, 854
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BpmI CTGGAG 1 cut(s) 684
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 952
BsaAI YACGTR 1 cut(s) 866
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 220, 816
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 484, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 986
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 2 cut(s) 663, 796
BseDI CCNNGG 2 cut(s) 220, 816
BseGI GGATG 1 cut(s) 415
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 986
BseMII CTCAG 1 cut(s) 1016
BseRI GAGGAG 1 cut(s) 505
BseXI GCAGC 2 cut(s) 173, 260
BseYI CCCAGC 1 cut(s) 763
BshFI GGCC 1 cut(s) 979
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 3 cut(s) 150, 168, 951
BslFI GGGAC 2 cut(s) 138, 887
BslI CCNNNNNNNGG 1 cut(s) 986
BsmAI GTCTC 2 cut(s) 911, 967
BsmBI CGTCTC 1 cut(s) 967
BsmFI GGGAC 2 cut(s) 138, 887
BsnI GGCC 1 cut(s) 979
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 624
Bsp143I GATC 5 cut(s) 352, 538, 697, 823, 858
Bsp1720I GCTNAGC 1 cut(s) 606
BspANI GGCC 1 cut(s) 979
BspCNI CTCAG 1 cut(s) 1015
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 6 cut(s) 19, 154, 175, 331, 814, 999
BspPI GGATC 5 cut(s) 347, 533, 705, 818, 866
BspQI GCTCTTC 1 cut(s) 1011
BspTI CTTAAG 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 220, 816
BssMI GATC 5 cut(s) 352, 538, 697, 823, 858
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 663, 796
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 107, 1011
BstACI GRCGYC 1 cut(s) 69
BstAFI CTTAAG 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 866
BstC8I GCNNGC 4 cut(s) 16, 432, 641, 738
BstDEI CTNAG 3 cut(s) 606, 1002, 1030
BstF5I GGATG 1 cut(s) 415
BstKTI GATC 5 cut(s) 355, 541, 700, 826, 861
BstMAI GTCTC 2 cut(s) 911, 967
BstMBI GATC 5 cut(s) 352, 538, 697, 823, 858
BstMWI GCNNNNNNNGC 3 cut(s) 710, 764, 956
BstNI CCWGG 2 cut(s) 663, 796
BstSCI CCNGG 3 cut(s) 661, 794, 950
BstV1I GCAGC 2 cut(s) 173, 260
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BsuI GTATCC 1 cut(s) 712
BsuRI GGCC 1 cut(s) 979
BtgZI GCGATG 1 cut(s) 479
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 1 cut(s) 415
Cac8I GCNNGC 4 cut(s) 16, 432, 641, 738
CciI TCATGA 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 77
CviAII CATG 3 cut(s) 515, 562, 1022
DdeI CTNAG 3 cut(s) 606, 1002, 1030
DpnI GATC 5 cut(s) 354, 540, 699, 825, 860
DpnII GATC 5 cut(s) 352, 538, 697, 823, 858
EaeI YGGCCR 1 cut(s) 977
Eam1104I CTCTTC 2 cut(s) 107, 1011
EarI CTCTTC 2 cut(s) 107, 1011
EciI GGCGGA 1 cut(s) 304
Ecl136II GAGCTC 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 816
Eco24I GRGCYC 1 cut(s) 624
Eco47I GGWCC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 622
Eco57I CTGAAG 2 cut(s) 405, 618
Eco88I CYCGRG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 622
EcoRII CCWGG 2 cut(s) 661, 794
EcoT14I CCWWGG 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 816
Esp3I CGTCTC 1 cut(s) 967
FaeI CATG 3 cut(s) 518, 565, 1025
FalI AAGNNNNNCTT 4 cut(s) 510, 542, 925, 957
FaqI GGGAC 2 cut(s) 138, 887
FatI CATG 3 cut(s) 514, 561, 1021
FauI CCCGC 1 cut(s) 163
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 8 cut(s) 159, 162, 172, 249, 318, 321, 637, 888
FokI GGATG 1 cut(s) 402
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 8 cut(s) 159, 162, 172, 249, 318, 321, 637, 888
FspBI CTAG 2 cut(s) 522, 543
GluI GCNGC 8 cut(s) 159, 162, 172, 249, 318, 321, 637, 888
GsaI CCCAGC 1 cut(s) 767
GsuI CTGGAG 1 cut(s) 684
HaeIII GGCC 1 cut(s) 979
HapII CCGG 3 cut(s) 150, 168, 951
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 3 cut(s) 518, 565, 1025
HindIII AAGCTT 4 cut(s) 47, 428, 608, 734
HinfI GANTC 6 cut(s) 30, 74, 412, 628, 771, 1028
HpaII CCGG 3 cut(s) 150, 168, 951
HphI GGTGA 5 cut(s) 124, 250, 560, 704, 752
Hpy166II GTNNAC 2 cut(s) 684, 1012
Hpy188I TCNGA 6 cut(s) 178, 598, 633, 853, 1005, 1033
Hpy188III TCNNGA 4 cut(s) 449, 515, 617, 625
Hpy8I GTNNAC 2 cut(s) 684, 1012
Hpy99I CGWCG 3 cut(s) 71, 143, 182
HpyAV CCTTC 7 cut(s) 123, 212, 280, 291, 304, 429, 1000
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 2 cut(s) 865, 876
HpyCH4V TGCA 2 cut(s) 740, 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 710, 764, 956
HpyF3I CTNAG 3 cut(s) 606, 1002, 1030
HpySE526I ACGT 2 cut(s) 865, 876
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 3 cut(s) 518, 565, 1025
Kzo9I GATC 5 cut(s) 352, 538, 697, 823, 858
LguI GCTCTTC 1 cut(s) 1011
LmnI GCTCC 4 cut(s) 23, 179, 335, 818
Lsp1109I GCAGC 2 cut(s) 173, 260
LweI GCATC 3 cut(s) 592, 745, 854
MaeI CTAG 2 cut(s) 522, 543
MaeII ACGT 2 cut(s) 865, 876
MaeIII GTNAC 1 cut(s) 806
MalI GATC 5 cut(s) 354, 540, 699, 825, 860
MbiI CCGCTC 1 cut(s) 263
MboI GATC 5 cut(s) 352, 538, 697, 823, 858
MboII GAAGA 8 cut(s) 94, 207, 276, 605, 611, 764, 833, 1028
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 2 cut(s) 472, 533
MlyI GAGTC 1 cut(s) 1022
MmeI TCCRAC 2 cut(s) 201, 562
MseI TTAA 4 cut(s) 51, 369, 399, 963
MslI CAYNNNNRTG 1 cut(s) 566
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 3 cut(s) 150, 168, 951
MspR9I CCNGG 3 cut(s) 663, 796, 952
MvaI CCWGG 2 cut(s) 663, 796
MwoI GCNNNNNNNGC 3 cut(s) 710, 764, 956
NciI CCSGG 1 cut(s) 952
NdeII GATC 5 cut(s) 352, 538, 697, 823, 858
NlaIII CATG 3 cut(s) 518, 565, 1025
NlaIV GGNNCC 6 cut(s) 19, 154, 175, 331, 814, 999
NmeAIII GCCGAG 2 cut(s) 201, 940
NmuCI GTSAC 1 cut(s) 806
PaeR7I CTCGAG 1 cut(s) 623
PagI TCATGA 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 1011
PfeI GAWTC 5 cut(s) 30, 74, 412, 628, 771
PflMI CCANNNNNTGG 1 cut(s) 986
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 8 cut(s) 160, 163, 173, 250, 319, 322, 638, 889
PleI GAGTC 1 cut(s) 1022
PpsI GAGTC 1 cut(s) 1022
Ppu21I YACGTR 1 cut(s) 866
Psp124BI GAGCTC 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 661, 794
PspFI CCCAGC 1 cut(s) 763
PspGI CCWGG 2 cut(s) 661, 794
PspN4I GGNNCC 6 cut(s) 19, 154, 175, 331, 814, 999
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 823
RseI CAYNNNNRTG 1 cut(s) 566
SacI GAGCTC 1 cut(s) 624
SapI GCTCTTC 1 cut(s) 1011
SaqAI TTAA 4 cut(s) 51, 369, 399, 963
SatI GCNGC 8 cut(s) 159, 162, 172, 249, 318, 321, 637, 888
Sau3AI GATC 5 cut(s) 352, 538, 697, 823, 858
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 1022
ScrFI CCNGG 3 cut(s) 663, 796, 952
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 3 cut(s) 592, 745, 854
Sfr274I CTCGAG 1 cut(s) 623
SinI GGWCC 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 3 cut(s) 368, 617, 623
SmoI CTYRAG 3 cut(s) 368, 617, 623
Sse9I AATT 2 cut(s) 472, 533
SspMI CTAG 2 cut(s) 522, 543
SstI GAGCTC 1 cut(s) 624
StyD4I CCNGG 3 cut(s) 661, 794, 950
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 2 cut(s) 868, 879
TaqI TCGA 3 cut(s) 345, 624, 769
TasI AATT 2 cut(s) 472, 533
TauI GCSGC 6 cut(s) 161, 174, 320, 323, 639, 890
TfiI GAWTC 5 cut(s) 30, 74, 412, 628, 771
Tru1I TTAA 4 cut(s) 51, 369, 399, 963
Tru9I TTAA 4 cut(s) 51, 369, 399, 963
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 2 cut(s) 161, 248
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 4 cut(s) 22, 404, 531, 578
TspGWI ACGGA 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 986
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 2 cut(s) 472, 533
XhoI CTCGAG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 1011
XspI CTAG 2 cut(s) 522, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.