Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015485

Physical Location & Seq

Genomic Coordinates Forward (+)

4117515 .. 4120111

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAGTCTAATAGCAGGCTCATACGAGAAATTCATATGGGGCTTCAAGCTCAAATCCCTAAAACCCAACCCTGATTCTCAATCCCTAGCCCTAACCCCACTCTTCTCCTATCCCTCCCACCTCTCCTCCATCACCACAGTTGCCACCGCTGGCTCTGCCGCGGCCTCCGGTGGCTCCGATGACACCATCCACCTCTACGACATGTCGTCCGCCACCTCCCTCGGCTCTCTCCACGACCACTCGGCCACCGTCACCTCCCTCTCCTTCTTCACCCCTCCCCATCTCTCATTTCCTCTCAACCTCGTCTCCGCCGCCGCCGACGGGTCGTTTTGCATCTACGAGGCCGACCCTTTTGTCCTCCTCAAGAGCCTTAAGCCCCACAGGAAGGCCATCAACGACGTGTCGTTGCACCCTTCTGGGAAGTTGGCTTTGACCGTTGGAAAAGACGAGTGCTTGTCGATGATCAACTTGGTGAGGGGTAGGAGGAGCTTCTATTGCAGGTTGGGGAAGGAGGCTAGCTTGGTGACCTACGATGGTTCTGGGGATAAGTTTTATATGGCTATGGAAGACAAGGTTATGGTTCATGAGGCTGAGGATGCTAGGTTGCTTTGCGAGTTGGAGAATTCAAAGCGGGTTCTCTGCGTCGAGCCGGGCGAGAACGGAGTTTTATATACTGGTGGTGAGGACCGCTGTATTACAGCATGGGACACAAACAGTGGGAAGGTTGCATATCGCATTGAGGATGCACACCCTGCTCGTGTGAAAGGAATTGTTGTGCTTACAAGCAAAGCTGGTGCTGTAGCCGATGATGACCCATATCTTGTAGCATCTGCCTCGTCAGATGGAGTTATACGCCTTTGGGATGTTCGCATGGCTGTTAAGGAGAAGCCAAATCCATTGGCCGAGGCTAATACAAAATCAAGGCTTACTTGTCTGGCTGGATCATCTCTTAAATCTTTCAAACGGCCACAGATTGGAAAAAGCGATAAAAAAGAGGAGCATGATGCAGCAACAGAAGGCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0022613 GO:0042254 GO:0042273 GO:0044085 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

342

Amino Acids

36.71

Weight (kDa)

6.37

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65030
fragaria_vesca	FvH4_3g05180
malus_domestica	MD05G1280700.v1.1 MD10G1259100.v1.1
prunus_persica	Prupe.4G084200_v2.0.a1
pyrus_communis	pycom10g21560
rosa_chinensis	RchiOBHm_Chr5g0014571
rosa_laevigata	RLG00000032129
rosa_multiflora	Rmu_co8518221.1_g000002 Rmu_sc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00061910
rosa_rugosa	Rorug05G0019500
rosa_samantha	Rh5AG114700 Rh5BG111600 Rh5CG123100 Rh5DG111000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	974
AccII	CGCG	1 cut(s)	161
AciI	CCGC	9 cut(s)	147, 159, 161, 210, 309, 312, 315, 631, 688
AclWI	GGATC	1 cut(s)	949
AcoI	YGGCCR	3 cut(s)	243, 900, 965
AcsI	RAATTY	2 cut(s)	29, 622
AfiI	CCNNNNNNNGG	3 cut(s)	321, 385, 974
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	2 cut(s)	201, 399
AgsI	TTSAA	3 cut(s)	46, 627, 961
AhdI	GACNNNNNGTC	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	400
AluBI	AGCT	4 cut(s)	49, 489, 519, 791
AluI	AGCT	4 cut(s)	49, 489, 519, 791
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	949
AoxI	GGCC	6 cut(s)	162, 243, 342, 387, 900, 965
ApeKI	GCWGC	1 cut(s)	1007
ApoI	RAATTY	2 cut(s)	29, 622
AspS9I	GGNCC	1 cut(s)	685
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	6 cut(s)	124, 244, 262, 484, 535, 692
AsuNHI	GCTAGC	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	685
BauI	CACGAG	1 cut(s)	756
BbsI	GAAGAC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	1019
BccI	CCATC	6 cut(s)	137, 194, 288, 398, 527, 836
BceAI	ACGGC	1 cut(s)	980
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	3 cut(s)	86, 516, 600
BfmI	CTRYAG	1 cut(s)	798
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	489
BisI	GCNGC	5 cut(s)	159, 162, 312, 315, 1008
BlsI	GCNGC	5 cut(s)	160, 163, 313, 316, 1009
Bme1390I	CCNGG	1 cut(s)	651
Bme18I	GGWCC	1 cut(s)	685
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	685
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	651
BmsI	GCATC	5 cut(s)	342, 586, 733, 836, 994
BmtI	GCTAGC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	651
BsaJI	CCNNGG	3 cut(s)	159, 220, 903
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 290, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 385, 974
Bse1I	ACTGG	1 cut(s)	679
BseDI	CCNNGG	3 cut(s)	159, 220, 903
BseGI	GGATG	4 cut(s)	186, 601, 748, 868
BseLI	CCNNNNNNNGG	3 cut(s)	321, 385, 974
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	4 cut(s)	115, 350, 499, 1010
BseXI	GCAGC	1 cut(s)	1019
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	6 cut(s)	164, 245, 344, 389, 902, 967
BsiSI	CCGG	2 cut(s)	168, 650
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	3 cut(s)	321, 385, 974
BsmAI	GTCTC	1 cut(s)	310
BsmBI	CGTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	6 cut(s)	164, 245, 344, 389, 902, 967
Bsp143I	GATC	2 cut(s)	462, 941
BspACI	CCGC	9 cut(s)	147, 159, 161, 210, 309, 312, 315, 631, 688
BspANI	GGCC	6 cut(s)	164, 245, 344, 389, 902, 967
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	489
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	949
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	3 cut(s)	159, 220, 903
BssMI	GATC	2 cut(s)	462, 941
BssSI	CACGAG	1 cut(s)	756
Bst2BI	CACGAG	1 cut(s)	756
Bst4CI	ACNGT	4 cut(s)	139, 250, 436, 716
Bst6I	CTCTTC	1 cut(s)	107
BstAFI	CTTAAG	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	16, 151, 517
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	523
BstF5I	GGATG	4 cut(s)	186, 601, 748, 868
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	465, 944
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	2 cut(s)	462, 941
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 495, 596, 752
BstNSI	RCATGY	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	649
BstSFI	CTRYAG	1 cut(s)	798
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	1019
BstV2I	GAAGAC	1 cut(s)	573
BsuRI	GGCC	6 cut(s)	164, 245, 344, 389, 902, 967
BtgI	CCRYGG	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	186, 601, 748, 868
BtsIMutI	CAGTG	1 cut(s)	721
BveI	ACCTGC	1 cut(s)	489
Cac8I	GCNNGC	3 cut(s)	16, 151, 517
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	685
Cfr42I	CCGCGG	1 cut(s)	162
CseI	GACGC	1 cut(s)	631
CviAII	CATG	5 cut(s)	202, 584, 702, 871, 1001
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	2 cut(s)	464, 943
DpnII	GATC	2 cut(s)	462, 941
DrdI	GACNNNNNNGTC	1 cut(s)	353
DriI	GACNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	3 cut(s)	243, 900, 965
Eam1104I	CTCTTC	1 cut(s)	107
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	2 cut(s)	199, 298
Eco47I	GGWCC	1 cut(s)	685
Eco91I	GGTNACC	1 cut(s)	523
EcoO65I	GGTNACC	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	5 cut(s)	205, 587, 705, 874, 1004
FalI	AAGNNNNNCTT	2 cut(s)	913, 945
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	5 cut(s)	201, 583, 701, 870, 1000
FauI	CCCGC	1 cut(s)	624
FauNDI	CATATG	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	462
Fnu4HI	GCNGC	5 cut(s)	159, 162, 312, 315, 1008
FokI	GGATG	4 cut(s)	173, 608, 755, 875
Fsp4HI	GCNGC	5 cut(s)	159, 162, 312, 315, 1008
FspBI	CTAG	3 cut(s)	86, 516, 600
GluI	GCNGC	5 cut(s)	159, 162, 312, 315, 1008
HaeIII	GGCC	6 cut(s)	164, 245, 344, 389, 902, 967
HapII	CCGG	2 cut(s)	168, 650
HgaI	GACGC	1 cut(s)	631
Hin1II	CATG	5 cut(s)	205, 587, 705, 874, 1004
HinfI	GANTC	2 cut(s)	4, 74
HpaII	CCGG	2 cut(s)	168, 650
HphI	GGTGA	6 cut(s)	124, 244, 262, 484, 535, 692
Hpy188I	TCNGA	2 cut(s)	178, 841
Hpy188III	TCNNGA	2 cut(s)	364, 584
Hpy99I	CGWCG	3 cut(s)	323, 401, 647
HpyAV	CCTTC	6 cut(s)	274, 379, 423, 502, 715, 1010
HpyCH4III	ACNGT	4 cut(s)	139, 250, 436, 716
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	6 cut(s)	333, 409, 498, 728, 746, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 495, 596, 752
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	5 cut(s)	205, 587, 705, 874, 1004
Ksp22I	TGATCA	1 cut(s)	462
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	462, 941
LmnI	GCTCC	3 cut(s)	179, 486, 997
Lsp1109I	GCAGC	1 cut(s)	1019
LweI	GCATC	5 cut(s)	342, 586, 733, 836, 994
MaeI	CTAG	3 cut(s)	86, 516, 600
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	250, 523
MalI	GATC	2 cut(s)	464, 943
MboI	GATC	2 cut(s)	462, 941
MboII	GAAGA	3 cut(s)	94, 259, 578
MluCI	AATT	3 cut(s)	29, 622, 768
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	418, 597
MseI	TTAA	3 cut(s)	372, 879, 951
MspA1I	CMGCKG	3 cut(s)	149, 161, 690
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	168, 650
MspR9I	CCNGG	1 cut(s)	651
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	4 cut(s)	155, 495, 596, 752
NciI	CCSGG	1 cut(s)	651
NdeI	CATATG	1 cut(s)	35
NdeII	GATC	2 cut(s)	462, 941
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	5 cut(s)	205, 587, 705, 874, 1004
NlaIV	GGNNCC	1 cut(s)	175
NmeAIII	GCCGAG	3 cut(s)	201, 221, 928
NmuCI	GTSAC	2 cut(s)	250, 523
NspI	RCATGY	1 cut(s)	205
PagI	TCATGA	1 cut(s)	583
PciI	ACATGT	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	974
PkrI	GCNGC	5 cut(s)	160, 163, 313, 316, 1009
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	685
SacII	CCGCGG	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	372, 879, 951
SatI	GCNGC	5 cut(s)	159, 162, 312, 315, 1008
Sau3AI	GATC	2 cut(s)	462, 941
Sau96I	GGNCC	1 cut(s)	685
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	651
SfaNI	GCATC	5 cut(s)	342, 586, 733, 836, 994
SfcI	CTRYAG	1 cut(s)	798
Sfr303I	CCGCGG	1 cut(s)	162
SgrBI	CCGCGG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	685
SmlI	CTYRAG	2 cut(s)	362, 371
SmoI	CTYRAG	2 cut(s)	362, 371
Sse9I	AATT	3 cut(s)	29, 622, 768
SsiI	CCGC	9 cut(s)	147, 159, 161, 210, 309, 312, 315, 631, 688
SspMI	CTAG	3 cut(s)	86, 516, 600
StyD4I	CCNGG	1 cut(s)	649
TaaI	ACNGT	4 cut(s)	139, 250, 436, 716
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	458, 645
TasI	AATT	3 cut(s)	29, 622, 768
TauI	GCSGC	4 cut(s)	161, 164, 314, 317
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	372, 879, 951
Tru9I	TTAA	3 cut(s)	372, 879, 951
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	2 cut(s)	250, 523
TseI	GCWGC	1 cut(s)	1007
Tsp45I	GTSAC	2 cut(s)	250, 523
TspDTI	ATGAA	2 cut(s)	22, 572
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	1 cut(s)	721
Van91I	CCANNNNNTGG	1 cut(s)	974
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	2 cut(s)	29, 622
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	3 cut(s)	86, 516, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.