AT1G65700

snRNP Sm proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011059
Physical Location & Seq
Reverse (-)
24434203 .. 24436456
2254 bp
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UTR
Exon/CDS
Intron
AT1G65700.1

Sequence Viewer

Length: 297 bp
ATGGCGGCAACTACTGGACTTGAGACTCTCGTCGATCAGATTATTTCGGTGATTACAAATGACGGACGCAACATTGTGGGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTCGAAGCTGAGAGCCCATCCGTTGAAACCCGTAGTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 ko03040 map03018 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

98

Amino Acids

10.71

Weight (kDa)

4.83

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 7 - 73 8.1e-19 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AfaI GTAC 2 cut(s) 162, 185
AflIII ACRYGT 2 cut(s) 136, 169
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 3 cut(s) 223, 235, 262
AluI AGCT 3 cut(s) 223, 235, 262
Alw26I GTCTC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 271
BccI CCATC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 229
BoxI GACNNNNGTC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 271
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 19
BssMI GATC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 173
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 271
CciI TCATGA 1 cut(s) 130
CseI GACGC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 161, 184
CviAII CATG 2 cut(s) 131, 170
CviJI RGCY 5 cut(s) 104, 223, 235, 262, 269
CviKI_1 RGCY 5 cut(s) 104, 223, 235, 262, 269
CviQI GTAC 2 cut(s) 161, 184
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 271
FaeI CATG 2 cut(s) 134, 173
FaiI YATR 4 cut(s) 113, 132, 171, 206
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 130, 169
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 243
GluI GCNGC 1 cut(s) 6
HgaI GACGC 1 cut(s) 75
Hin1II CATG 2 cut(s) 134, 173
HinfI GANTC 2 cut(s) 25, 125
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 39, 194
Hpy188III TCNNGA 2 cut(s) 131, 248
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 2 cut(s) 134, 173
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 220, 232
LpnPI CCDG 4 cut(s) 86, 113, 209, 233
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 136
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 271
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 2 cut(s) 188, 223
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
NdeII GATC 1 cut(s) 34
NlaIII CATG 2 cut(s) 134, 173
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 257
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 169
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PscI ACATGT 1 cut(s) 169
PshAI GACNNNNGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
RsaI GTAC 2 cut(s) 162, 185
RsaNI GTAC 2 cut(s) 161, 184
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 271
SetI ASST 6 cut(s) 94, 139, 211, 225, 237, 264
SfaNI GCATC 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 99
TaiI ACGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 33, 257
TatI WGTACW 2 cut(s) 160, 183
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 138, 147
TspGWI ACGGA 2 cut(s) 78, 264
XceI RCATGY 1 cut(s) 173
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.