FvH4_7g03730

Sm-like protein LSM8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011059
Physical Location & Seq
Reverse (-)
4241181 .. 4244587
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03730.t3

Sequence Viewer

Length: 297 bp
ATGTCCGGTGGCCCTGGTCTTGAGTCACTTGTTGACCAAACAATTTCAGTTATCACAAATGATGGACGCAATATTGTGGGAGTCTTGAAAGGCTTTGACCAGGCTACTAATATCATTCTTGATGAGTCTCATGAACGGGTTTTCTCTACAAAGGAGGGTGTTCAGCAACTCGTGCTGGGATTGTATATAATCAGGGGCGACAACATAAGCATAGTTGGGGAACTAGATGCAGATCTTGATTCGAGCCTTGATTGGTCGAAGATGAGAGCGTATCCTTTGAAGCCTGTCATCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 ko03040 map03018 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

99

Amino Acids

10.68

Weight (kDa)

4.61

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 7 - 73 1.2e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 88, 280
AjnI CCWGG 2 cut(s) 13, 99
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 11
BauI CACGAG 1 cut(s) 170
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 15, 101
BciVI GTATCC 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 224
BfuI GTATCC 1 cut(s) 282
BglII AGATCT 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 15, 101
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 15, 101
BmsI GCATC 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 5
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 2 cut(s) 15, 101
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 175
BshFI GGCC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 232
BspANI GGCC 1 cut(s) 12
BspHI TCATGA 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 232
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 15, 101
BstAPI GCANNNNNTGC 1 cut(s) 172
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 2 cut(s) 15, 101
BstSCI CCNGG 2 cut(s) 13, 99
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 288
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 1 cut(s) 75
CviAII CATG 1 cut(s) 131
CviJI RGCY 5 cut(s) 12, 93, 104, 246, 283
CviKI_1 RGCY 5 cut(s) 12, 93, 104, 246, 283
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 13, 99
FaeI CATG 1 cut(s) 134
FaiI YATR 5 cut(s) 132, 186, 188, 206, 212
FatI CATG 1 cut(s) 130
FokI GGATG 1 cut(s) 275
FspBI CTAG 1 cut(s) 224
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 4 cut(s) 23, 81, 125, 239
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 34
Hpy188III TCNNGA 5 cut(s) 20, 85, 119, 131, 236
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 6 cut(s) 19, 27, 86, 113, 161, 178
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 24
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 271
MflI RGATCY 1 cut(s) 232
MluCI AATT 1 cut(s) 42
MlyI GAGTC 3 cut(s) 32, 90, 134
MnlI CCTC 1 cut(s) 148
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 15, 101
MvaI CCWGG 2 cut(s) 15, 101
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 24
PagI TCATGA 1 cut(s) 130
PfeI GAWTC 1 cut(s) 239
PleI GAGTC 3 cut(s) 31, 89, 133
PpsI GAGTC 3 cut(s) 31, 89, 133
Psp6I CCWGG 2 cut(s) 13, 99
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 2 cut(s) 13, 99
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 232
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 3 cut(s) 32, 90, 134
ScrFI CCNGG 2 cut(s) 15, 101
SfaNI GCATC 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 1 cut(s) 42
SspI AATATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 13, 99
TaqI TCGA 2 cut(s) 242, 257
TasI AATT 1 cut(s) 42
TfiI GAWTC 1 cut(s) 239
TseFI GTSAC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 147
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.