Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011059

Physical Location & Seq

Genomic Coordinates Reverse (-)

18389807 .. 18391311

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G245700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCCAGTGGCCCTGGTCTTGAGTCACTTGTTGATCAAACAATTTCAGTTATCACAAATGATGGACGGAATATTGTGGGAGTCTTGAAAGGCTTTGACCAAGCTACGAATATCATTCTCGATGAATCTCATGAACGTGTTTTCTCTACAAAGGAGGGTGTTCAGCAACTCGTGTTGGGATTGTATATAATCAGAGGTGACAACATAAGCATTGTTGGGGAACTAGATGCAGATCTTGATTCTACTGTTGACTGGTCGAATATGAAAGCCTATCCCCTCAAGCCTGTCATCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

99

Amino Acids

10.67

Weight (kDa)

4.47

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65700 AT1G65700
fragaria_vesca	FvH4_7g03730 FvH4_7g03730 FvH4_7g03730 FvH4_7g03730 FvH4_7g03730
malus_domestica	MD06G1241400.v1.1 MD14G1247500.v1.1
prunus_persica	Prupe.1G565900_v2.0.a1 Prupe.5G245700_v2.0.a1
pyrus_communis	pycom06g21640
rosa_chinensis	RchiOBHm_Chr1g0326651
rosa_multiflora	Rmu_sc0000129.1_g000004
rosa_roxburghii	Rroxscaffold_4G00323620
rosa_rugosa	Rorug01G0061400
rosa_samantha	Rh1AG077500 Rh1BG063100 Rh1CG076000
rosa_wichuraiana	Rw1G006240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	209
BauI	CACGAG	1 cut(s)	170
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	15
BclI	TGATCA	1 cut(s)	34
BfaI	CTAG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	217
BpuEI	CTTGAG	2 cut(s)	41, 263
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	6, 257
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	6, 257
BshFI	GGCC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	34, 232
BspANI	GGCC	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	6, 257
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	34, 232
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	37, 235
BstMBI	GATC	2 cut(s)	34, 232
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	13, 292
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	11
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	12, 93, 104, 269, 283
CviKI_1	RGCY	5 cut(s)	12, 93, 104, 269, 283
DpnI	GATC	2 cut(s)	36, 234
DpnII	GATC	2 cut(s)	34, 232
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	1 cut(s)	134
FaiI	YATR	5 cut(s)	132, 186, 188, 206, 263
FatI	CATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	34
FokI	GGATG	1 cut(s)	275
FspBI	CTAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	4 cut(s)	23, 81, 125, 239
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	5 cut(s)	20, 85, 119, 131, 236
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	34, 232
LpnPI	CCDG	3 cut(s)	19, 27, 238
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	24, 197
MalI	GATC	2 cut(s)	36, 234
MboI	GATC	2 cut(s)	34, 232
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	32, 90
MnlI	CCTC	3 cut(s)	148, 188, 287
MslI	CAYNNNNRTG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	34, 232
NlaIII	CATG	1 cut(s)	134
NmuCI	GTSAC	2 cut(s)	24, 197
PagI	TCATGA	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	125, 239
PleI	GAGTC	2 cut(s)	31, 89
PpsI	GAGTC	2 cut(s)	31, 89
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	34, 232
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	2 cut(s)	32, 90
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	3 cut(s)	106, 139, 199
SfaNI	GCATC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	20, 278
SmoI	CTYRAG	2 cut(s)	20, 278
Sse9I	AATT	1 cut(s)	42
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	120, 257
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	125, 239
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	24, 197
Tsp45I	GTSAC	2 cut(s)	24, 197
TspDTI	ATGAA	3 cut(s)	138, 147, 278
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	13
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.