Rorug01G0061400

Sm-like protein LSM8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011059
Physical Location & Seq
Forward (+)
10092550 .. 10094211
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0061400.1

Sequence Viewer

Length: 960 bp
ATGGAAGTGAAGCTCCGAACGGCTCGGACTTTGGTCTCCAAGCTCAGCTCCGTTTCCGAACAGACCCGATCCGAAGCCCTCAAGGAGCTCCGCCTCATCACCAAGCACGACGCCGACAGCCGCCCCTTCGTCGCCGACGCCGGCGCCATTCCCTACTTAGCCGAGACTCTCTTCGGCTCCACCCCTGACTTCCAAGACGACGCCGCCGCCACTCTCCTCAACATCTCCATCTCCTGCCGCCAGAGCCTCATTTCCACGCGCGGCCTCCTCGACGCGATCTCCCACGCGCTACGCAACCACGGCTCACCTACCTCCTCCGCCACCGCCGTCCAGTCTTCCGCCGCCACTCTCCACAGCCTCCTCGTCGTGGAAGACTACCGCCCGATCATCGGCGCCAAGCGCGACATTGTGTACTCGCTGGTCGACATCATCAAGAGCCCCAAGTCTCCTCCGAGGTCGGTGAAGGACGCGCTCAAGGCTCTGTTCGGAATCGCTCTCTACCCCTTGAATCGGGCCTCGCTGGTGGAGCTCGGGGCGGTTCCCGCGCTTTTTACTCTGGTGGTGAACGACGGCCGCCTGGGGATCGTGGAGGACGCGACGGCGGTGATCGCGCAGGTGGCCGGGTGCGAGGAGAGCGAGGACGCGTTTCGGAGGGTCGCCGGGGTTAGGGTTCTGGCCGACCTTCTTGATTTCTCGACCGGGTCGAGCTTGAGGAGCAGGGAGAACGCCGTGTCGGCGCTGCTCAATCTGGCTCAGTGCGGCGGCCAGAGGGCCGTGGCGGAGGTGAGGGAGGAGGGAATGGGGGTGGTGGATGGGATTGCTGACGTGGCGGAGAACGGAGGTCCGAAAGGGAAGAGCAAAGGGGTGGCGCTGATGAAGGTGATTGATGGCGGGAATAAAAGCATTTCGAGTATATTCAGAGATCCACGGTTCGATTCTTTACTAAGACAATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 ko03040 map03018 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

319

Amino Acids

33.78

Weight (kDa)

6.92

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 11 - 294 2.7e-15 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 604
Acc36I ACCTGC 1 cut(s) 604
AccB1I GGYRCC 2 cut(s) 143, 392
AccI GTMKAC 1 cut(s) 423
AclWI GGATC 3 cut(s) 63, 590, 917
AcoI YGGCCR 4 cut(s) 571, 618, 675, 763
AcyI GRCGYC 5 cut(s) 111, 138, 144, 201, 393
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 4 cut(s) 367, 389, 510, 666
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 1 cut(s) 508
AjiI CACGTC 1 cut(s) 826
AjnI CCWGG 1 cut(s) 576
AluBI AGCT 6 cut(s) 13, 43, 48, 88, 529, 708
AluI AGCT 6 cut(s) 13, 43, 48, 88, 529, 708
Alw21I GWGCWC 2 cut(s) 90, 531
Alw26I GTCTC 3 cut(s) 40, 158, 450
AlwI GGATC 3 cut(s) 63, 590, 917
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 7 cut(s) 262, 513, 571, 618, 675, 763, 771
ApeKI GCWGC 1 cut(s) 739
AspS9I GGNCC 3 cut(s) 513, 771, 842
AsuC2I CCSGG 3 cut(s) 622, 661, 700
AsuHPI GGTGA 7 cut(s) 91, 297, 472, 574, 616, 796, 892
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 842
BanI GGYRCC 2 cut(s) 143, 392
BanII GRGCYC 3 cut(s) 90, 440, 531
BbsI GAAGAC 2 cut(s) 327, 378
Bbv12I GWGCWC 2 cut(s) 90, 531
BbvI GCAGC 1 cut(s) 726
BccI CCATC 3 cut(s) 236, 806, 881
BceAI ACGGC 7 cut(s) 36, 311, 316, 586, 615, 713, 758
BciT130I CCWGG 1 cut(s) 578
BcnI CCSGG 3 cut(s) 622, 661, 700
BcoDI GTCTC 3 cut(s) 40, 158, 450
BfoI RGCGCY 4 cut(s) 147, 396, 740, 872
BfuAI ACCTGC 1 cut(s) 604
BglI GCCNNNNNGGC 1 cut(s) 734
BlpI GCTNAGC 1 cut(s) 44
Bme1390I CCNGG 4 cut(s) 578, 622, 661, 700
Bme18I GGWCC 1 cut(s) 842
BmeT110I CYCGRG 1 cut(s) 530
BmgBI CACGTC 1 cut(s) 826
BmgT120I GGNCC 3 cut(s) 513, 771, 842
BmiI GGNNCC 4 cut(s) 145, 178, 394, 540
BmrFI CCNGG 4 cut(s) 578, 622, 661, 700
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 327, 378
Bpu1102I GCTNAGC 1 cut(s) 44
BpuEI CTTGAG 3 cut(s) 65, 458, 730
BpuMI CCSGG 3 cut(s) 622, 661, 700
BsaHI GRCGYC 5 cut(s) 111, 138, 144, 201, 393
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 6 cut(s) 298, 452, 577, 660, 774, 926
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 4 cut(s) 367, 389, 510, 666
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 6 cut(s) 298, 452, 577, 660, 774, 926
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 4 cut(s) 367, 389, 510, 666
BseMII CTCAG 2 cut(s) 58, 767
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 8 cut(s) 206, 257, 304, 350, 438, 644, 727, 806
BseX3I CGGCCG 1 cut(s) 571
BseXI GCAGC 1 cut(s) 726
Bsh1285I CGRYCG 2 cut(s) 574, 699
BshFI GGCC 7 cut(s) 264, 515, 573, 620, 677, 765, 773
BshNI GGYRCC 2 cut(s) 143, 392
BsiEI CGRYCG 2 cut(s) 574, 699
BsiHKAI GWGCWC 2 cut(s) 90, 531
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 4 cut(s) 141, 621, 660, 699
BslI CCNNNNNNNGG 4 cut(s) 367, 389, 510, 666
BsmAI GTCTC 3 cut(s) 40, 158, 450
BsnI GGCC 7 cut(s) 264, 515, 573, 620, 677, 765, 773
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 90, 440, 531
Bsp143I GATC 6 cut(s) 68, 276, 384, 582, 606, 922
Bsp1720I GCTNAGC 1 cut(s) 44
BspANI GGCC 7 cut(s) 264, 515, 573, 620, 677, 765, 773
BspCNI CTCAG 2 cut(s) 57, 766
BspLI GGNNCC 4 cut(s) 145, 178, 394, 540
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 3 cut(s) 63, 590, 917
BspQI GCTCTTC 1 cut(s) 848
BspT107I GGYRCC 2 cut(s) 143, 392
BspTNI GGTCTC 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 6 cut(s) 298, 452, 577, 660, 774, 926
BssMI GATC 6 cut(s) 68, 276, 384, 582, 606, 922
BssNI GRCGYC 5 cut(s) 111, 138, 144, 201, 393
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 1 cut(s) 930
Bst6I CTCTTC 2 cut(s) 176, 848
BstACI GRCGYC 5 cut(s) 111, 138, 144, 201, 393
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 4 cut(s) 44, 157, 753, 944
BstDSI CCRYGG 3 cut(s) 298, 774, 926
BstF5I GGATG 1 cut(s) 817
BstH2I RGCGCY 4 cut(s) 147, 396, 740, 872
BstKTI GATC 6 cut(s) 71, 279, 387, 585, 609, 925
BstMAI GTCTC 3 cut(s) 40, 158, 450
BstMBI GATC 6 cut(s) 68, 276, 384, 582, 606, 922
BstMCI CGRYCG 2 cut(s) 574, 699
BstNI CCWGG 1 cut(s) 578
BstPAI GACNNNNGTC 1 cut(s) 32
BstSCI CCNGG 4 cut(s) 576, 620, 659, 698
BstV1I GCAGC 1 cut(s) 726
BstV2I GAAGAC 2 cut(s) 327, 378
BstX2I RGATCY 1 cut(s) 922
BstYI RGATCY 1 cut(s) 922
BstZI CGGCCG 1 cut(s) 571
BsuRI GGCC 7 cut(s) 264, 515, 573, 620, 677, 765, 773
BtgI CCRYGG 3 cut(s) 298, 774, 926
BtrI CACGTC 1 cut(s) 826
BtsCI GGATG 1 cut(s) 817
BtsIMutI CAGTG 1 cut(s) 761
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 513, 771, 842
CseI GACGC 7 cut(s) 119, 146, 209, 281, 476, 602, 650
Csp6I GTAC 1 cut(s) 412
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 4 cut(s) 44, 157, 753, 944
DinI GGCGCC 2 cut(s) 145, 394
DpnI GATC 6 cut(s) 70, 278, 386, 584, 608, 924
DpnII GATC 6 cut(s) 68, 276, 384, 582, 606, 922
EaeI YGGCCR 4 cut(s) 571, 618, 675, 763
EagI CGGCCG 1 cut(s) 571
Eam1104I CTCTTC 2 cut(s) 176, 848
EarI CTCTTC 2 cut(s) 176, 848
EciI GGCGGA 5 cut(s) 80, 307, 328, 794, 845
Ecl136II GAGCTC 2 cut(s) 88, 529
EclXI CGGCCG 1 cut(s) 571
Eco24I GRGCYC 3 cut(s) 90, 440, 531
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 842
Eco52I CGGCCG 1 cut(s) 571
Eco53kI GAGCTC 2 cut(s) 88, 529
Eco88I CYCGRG 1 cut(s) 530
EcoICRI GAGCTC 2 cut(s) 88, 529
EcoRII CCWGG 1 cut(s) 576
EcoT38I GRGCYC 3 cut(s) 90, 440, 531
EgeI GGCGCC 2 cut(s) 145, 394
EheI GGCGCC 2 cut(s) 145, 394
FaiI YATR 1 cut(s) 914
FalI AAGNNNNNCTT 1 cut(s) 937
FauI CCCGC 2 cut(s) 550, 884
FblI GTMKAC 1 cut(s) 423
FokI GGATG 1 cut(s) 824
FriOI GRGCYC 3 cut(s) 90, 440, 531
HaeII RGCGCY 4 cut(s) 147, 396, 740, 872
HaeIII GGCC 7 cut(s) 264, 515, 573, 620, 677, 765, 773
HapII CCGG 4 cut(s) 141, 621, 660, 699
HgaI GACGC 7 cut(s) 119, 146, 209, 281, 476, 602, 650
Hin1I GRCGYC 5 cut(s) 111, 138, 144, 201, 393
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 4 cut(s) 166, 489, 508, 935
HpaII CCGG 4 cut(s) 141, 621, 660, 699
HphI GGTGA 7 cut(s) 91, 297, 472, 574, 616, 796, 892
Hpy166II GTNNAC 3 cut(s) 412, 424, 565
Hpy188I TCNGA 9 cut(s) 17, 27, 58, 73, 453, 488, 651, 846, 920
Hpy188III TCNNGA 4 cut(s) 433, 686, 694, 957
Hpy8I GTNNAC 3 cut(s) 412, 424, 565
Hpy99I CGWCG 8 cut(s) 113, 134, 140, 203, 275, 368, 572, 601
HpyAV CCTTC 4 cut(s) 136, 457, 692, 871
HpyCH4III ACNGT 1 cut(s) 930
HpyCH4IV ACGT 1 cut(s) 825
HpyF3I CTNAG 4 cut(s) 44, 157, 753, 944
HpySE526I ACGT 1 cut(s) 825
Hsp92I GRCGYC 5 cut(s) 111, 138, 144, 201, 393
KasI GGCGCC 2 cut(s) 143, 392
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 6 cut(s) 68, 276, 384, 582, 606, 922
LguI GCTCTTC 1 cut(s) 848
LmnI GCTCC 7 cut(s) 18, 53, 85, 93, 182, 526, 714
Lsp1109I GCAGC 1 cut(s) 726
MaeII ACGT 1 cut(s) 825
MalI GATC 6 cut(s) 70, 278, 386, 584, 608, 924
MboI GATC 6 cut(s) 68, 276, 384, 582, 606, 922
MboII GAAGA 5 cut(s) 163, 327, 383, 865, 945
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 3 cut(s) 90, 440, 531
MluI ACGCGT 1 cut(s) 642
Mly113I GGCGCC 2 cut(s) 144, 393
MlyI GAGTC 1 cut(s) 160
MreI CGCCGGCG 1 cut(s) 140
MroNI GCCGGC 1 cut(s) 140
MspI CCGG 4 cut(s) 141, 621, 660, 699
MspR9I CCNGG 4 cut(s) 578, 622, 661, 700
MvaI CCWGG 1 cut(s) 578
NaeI GCCGGC 1 cut(s) 142
NarI GGCGCC 2 cut(s) 144, 393
NciI CCSGG 3 cut(s) 622, 661, 700
NdeII GATC 6 cut(s) 68, 276, 384, 582, 606, 922
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 4 cut(s) 145, 178, 394, 540
NmeAIII GCCGAG 1 cut(s) 187
PaqCI CACCTGC 1 cut(s) 604
PciSI GCTCTTC 1 cut(s) 848
PcsI WCGNNNNNNNCGW 1 cut(s) 701
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 3 cut(s) 489, 508, 935
PflFI GACNNNGTC 1 cut(s) 700
PleI GAGTC 1 cut(s) 160
PluTI GGCGCC 2 cut(s) 147, 396
PpsI GAGTC 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 32
Psp124BI GAGCTC 2 cut(s) 90, 531
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 4 cut(s) 145, 178, 394, 540
PspPI GGNCC 3 cut(s) 513, 771, 842
PsuI RGATCY 1 cut(s) 922
PsyI GACNNNGTC 1 cut(s) 700
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 2 cut(s) 90, 531
SalI GTCGAC 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 848
Sau3AI GATC 6 cut(s) 68, 276, 384, 582, 606, 922
Sau96I GGNCC 3 cut(s) 513, 771, 842
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 4 cut(s) 578, 622, 661, 700
SduI GDGCHC 3 cut(s) 90, 440, 531
SfoI GGCGCC 2 cut(s) 145, 394
SgrAI CRCCGGYG 1 cut(s) 140
SinI GGWCC 1 cut(s) 842
SmlI CTYRAG 3 cut(s) 80, 473, 709
SmoI CTYRAG 3 cut(s) 80, 473, 709
SspDI GGCGCC 2 cut(s) 143, 392
SstI GAGCTC 2 cut(s) 90, 531
StyD4I CCNGG 4 cut(s) 576, 620, 659, 698
TaaI ACNGT 1 cut(s) 930
TaiI ACGT 1 cut(s) 828
TaqI TCGA 6 cut(s) 270, 423, 695, 704, 908, 933
TatI WGTACW 1 cut(s) 411
TauI GCSGC 9 cut(s) 123, 206, 209, 240, 264, 344, 576, 762, 765
TfiI GAWTC 3 cut(s) 489, 508, 935
TscAI CASTG 1 cut(s) 761
TseI GCWGC 1 cut(s) 739
TspDTI ATGAA 1 cut(s) 890
TspGWI ACGGA 2 cut(s) 40, 852
TspRI CASTG 1 cut(s) 761
Tth111I GACNNNGTC 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.