AT1G65910
NAC Family

NAC domain containing protein 28

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
24520668 .. 24524260
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65910.1

Sequence Viewer

Length: 1896 bp
ATGGCTCCTGTTTCAATGCCTCCAGGTTTCCGGTTTCATCCAACAGACGAAGAGCTTGTCATATACTACCTCAAGCGAAAGATTAATGGTCGGACTATTGAGTTAGAGATAATACCCGAGATTGATCTTTACAAATGCGAACCTTGGGATTTACCTGGGAAGTCCTTGCTGCCAAGTAAAGACCTAGAATGGTTCTTTTTCAGTCCTCGAGACCGGAAATATCCAAACGGATCAAGAACAAACCGGGCGACCAAAGCAGGTTACTGGAAAGCCACCGGGAAAGATCGTAAAGTGACTTCACATTCACGGATGGTTGGAACAAAGAAAACATTAGTTTATTACCGAGGAAGAGCGCCTCATGGCTCTCGTACCGATTGGGTCATGCACGAGTACCGTCTTGAAGAACAAGAATGTGACTCTAAATCCGGTATACAGGATGCCTATGCACTTTGTCGAGTATTTAAGAAGAGTGCTTTAGCCAACAAAATTGAAGAACAACACCATGGTACGAAGAAGAACAAAGGAACGACTAATAGTGAACAATCTACTTCTAGTACTTGTTTGTATTCTGATGGAATGTATGAAAACCTCGAAAACTCGGGGTATCCAGTCTCACCTGAGACAGGAGGCTTAACTCAACTCGGTAATAATTCGTCGTCGGATATGGAAACGATAGAGAATAAATGGAGTCAGTTTATGTCGCATGACACGTCCTTCAACTTCCCACCTCAGTCTCAATATGGAACAATCTCATATCCTCCCTCGAAGGTTGATATAGCGTTAGAGTGTGCAAGACTACAAAATCGTATGTTGCCACCAGTACCACCACTTTACGTAGAAGGTCTCACACACAATGAATATTTTGGAAACAATGTAGCTAACGATACAGATGAAATGTTGAGCAAGATTATAGCATTGGCTCAAGCCTCACATGAGCCACGAAACAGTCTAGACTCATGGGACGGTGGTTCTGCTTCCGGGAACTTCCATGGAGACTTTAACTATTCCGGAGAAAAAGTCTCATGCCTAGAGGCGAACGTGGAGGCTGTAGATATGCAAGAACACCATGTGAATTTTAAGGAAGAAAGACTTGTTGAAAACTTGAGATGGGTAGGAGTATCAAGCAAGGAACTTGAAAAGAGCTTCGTTGAAGAACACTCAACGGTAATTCCTATAGAAGATATTTGGAGATATCATAATGATAATCAAGAACAAGAACATCATGATCAAGATGGTATGGACGTTAACAACAACAATGGAGATGTGGATGATGCTTTCACACTCGAGTTTTCGGAAAACGAACATAACGAGAATCTTTTGGACAAGAACGATCATGAGACAACGAGTTCCTCATGTTTTGAGGTGGTAAAAAAAGTTGAGGTTAGCCATGGATTGTTTGTCACAACTCGTCAGGTAACCAACACATTCTTCCAACAGATAGTACCATCGCAAACCGTTATAGTTTATATAAATCCGACGGATGGCAATGAGTGTTGTCATAGTATGACATCAAAAGAGGAGGTTCATGTCCGTAAAAAGATAAATCCGCGAATCAACGGAGTAAGCTCAACAGTTCTTGGACAATGGAGAAAATTCGCGCATGTTATTGGCTTCATTCCTATGCTTCTATTGATGCGTTGTGTTCATCGAGGTAACTCTAACAAAAACAGAGGCAGTGAAGGTTACTCGAGGCAGCCTACGAGAGGAGATTGTAACAATCGGGGAACAATACTCATGATGGAAAATGCTGTCGTGAGAAGAAAAATTTGGAAGAAGAAGAAAGAGAAAAATATGGTTGACGAACAAGGTTTTCGGTTTCAAGATAGTTTCGTATTGAAGAAGTTGGGGCTTTCTCTTGCTATCATCTTAGCTGTTTCTACCATAAGTCTTATTTGA

Protein Analysis

631

Amino Acids

71.91

Weight (kDa)

6.18

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 133 5.2e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 430
AccII CGCG 2 cut(s) 1549, 1598
AccIII TCCGGA 1 cut(s) 1007
AciI CCGC 1 cut(s) 1547
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 3 cut(s) 1072, 1592, 1764
AdeI CACNNNGTG 1 cut(s) 1069
AfaI GTAC 6 cut(s) 370, 392, 508, 556, 822, 1443
AfiI CCNNNNNNNGG 3 cut(s) 623, 1481, 1703
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 9 cut(s) 15, 401, 491, 718, 1097, 1136, 1151, 1820, 1837
AjiI CACGTC 1 cut(s) 711
AjnI CCWGG 2 cut(s) 22, 154
AjuI GAANNNNNNNTTGG 4 cut(s) 1412, 1444, 1750, 1782
AluBI AGCT 5 cut(s) 55, 878, 1143, 1566, 1871
AluI AGCT 5 cut(s) 55, 878, 1143, 1566, 1871
Alw26I GTCTC 8 cut(s) 204, 614, 616, 738, 848, 987, 1024, 1331
AlwI GGATC 1 cut(s) 238
Ama87I CYCGRG 5 cut(s) 116, 207, 598, 1283, 1687
Aor13HI TCCGGA 1 cut(s) 1007
ApeKI GCWGC 2 cut(s) 169, 1693
ApoI RAATTY 3 cut(s) 1072, 1592, 1764
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AseI ATTAAT 1 cut(s) 84
AspLEI GCGC 2 cut(s) 355, 1600
AsuC2I CCSGG 3 cut(s) 245, 277, 979
AsuHPI GGTGA 1 cut(s) 606
AvaI CYCGRG 5 cut(s) 116, 207, 598, 1283, 1687
BarI GAAGNNNNNNTAC 2 cut(s) 280, 312
BauI CACGAG 1 cut(s) 386
BbvI GCAGC 2 cut(s) 156, 1705
BccI CCATC 7 cut(s) 304, 566, 1101, 1226, 1453, 1475, 1732
BciT130I CCWGG 2 cut(s) 24, 156
BciVI GTATCC 1 cut(s) 615
BclI TGATCA 1 cut(s) 1225
BcnI CCSGG 3 cut(s) 245, 277, 979
BcoDI GTCTC 8 cut(s) 204, 614, 616, 738, 848, 987, 1024, 1331
BfaI CTAG 4 cut(s) 185, 552, 950, 1028
BfmI CTRYAG 2 cut(s) 1047, 1173
BfoI RGCGCY 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 248
BfuI GTATCC 1 cut(s) 615
BisI GCNGC 2 cut(s) 170, 1694
BlsI GCNGC 2 cut(s) 171, 1695
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 5 cut(s) 24, 156, 245, 277, 979
BmeT110I CYCGRG 5 cut(s) 116, 207, 598, 1283, 1687
BmgBI CACGTC 1 cut(s) 711
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 5 cut(s) 24, 156, 245, 277, 979
BmsI GCATC 3 cut(s) 427, 1261, 1623
BpmI CTGGAG 1 cut(s) 6
BpuEI CTTGAG 3 cut(s) 56, 906, 1123
BpuMI CCSGG 3 cut(s) 245, 277, 979
BsaAI YACGTR 1 cut(s) 835
BsaI GGTCTC 2 cut(s) 204, 848
BsaJI CCNNGG 6 cut(s) 143, 155, 343, 502, 988, 1387
BsaWI WCCGGW 4 cut(s) 30, 213, 425, 1007
BsaXI ACNNNNNCTCC 2 cut(s) 1002, 1032
Bsc4I CCNNNNNNNGG 3 cut(s) 623, 1481, 1703
Bse1I ACTGG 3 cut(s) 269, 608, 818
Bse3DI GCAATG 1 cut(s) 1492
BseAI TCCGGA 1 cut(s) 1007
BseBI CCWGG 2 cut(s) 24, 156
BseDI CCNNGG 6 cut(s) 143, 155, 343, 502, 988, 1387
BseGI GGATG 5 cut(s) 37, 315, 442, 1273, 1486
BseLI CCNNNNNNNGG 3 cut(s) 623, 1481, 1703
BseMI GCAATG 1 cut(s) 1492
BseMII CTCAG 2 cut(s) 609, 743
BseNI ACTGG 3 cut(s) 269, 608, 818
BseRI GAGGAG 2 cut(s) 1532, 1719
BseXI GCAGC 2 cut(s) 156, 1705
Bsh1236I CGCG 2 cut(s) 1549, 1598
BsiHKCI CYCGRG 5 cut(s) 116, 207, 598, 1283, 1687
BsiSI CCGG 7 cut(s) 31, 214, 244, 276, 426, 978, 1008
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 3 cut(s) 623, 1481, 1703
BsmAI GTCTC 8 cut(s) 204, 614, 616, 738, 848, 987, 1024, 1331
BsmFI GGGAC 1 cut(s) 974
Bso31I GGTCTC 2 cut(s) 204, 848
BsoBI CYCGRG 5 cut(s) 116, 207, 598, 1283, 1687
Bsp13I TCCGGA 1 cut(s) 1007
Bsp143I GATC 5 cut(s) 124, 230, 283, 1225, 1330
Bsp19I CCATGG 3 cut(s) 502, 988, 1387
BspACI CCGC 1 cut(s) 1547
BspCNI CTCAG 2 cut(s) 610, 742
BspEI TCCGGA 1 cut(s) 1007
BspFNI CGCG 2 cut(s) 1549, 1598
BspHI TCATGA 3 cut(s) 1222, 1333, 1734
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 2 cut(s) 45, 343
BspTNI GGTCTC 2 cut(s) 204, 848
BsrDI GCAATG 1 cut(s) 1492
BsrI ACTGG 3 cut(s) 269, 608, 818
BssECI CCNNGG 6 cut(s) 143, 155, 343, 502, 988, 1387
BssMI GATC 5 cut(s) 124, 230, 283, 1225, 1330
BssNAI GTATAC 1 cut(s) 431
BssSI CACGAG 1 cut(s) 386
BssT1I CCWWGG 4 cut(s) 143, 502, 988, 1387
Bst1107I GTATAC 1 cut(s) 431
Bst2BI CACGAG 1 cut(s) 386
Bst2UI CCWGG 2 cut(s) 24, 156
Bst4CI ACNGT 6 cut(s) 395, 947, 965, 1165, 1456, 1573
Bst6I CTCTTC 3 cut(s) 45, 343, 461
BstBAI YACGTR 1 cut(s) 835
BstDEI CTNAG 3 cut(s) 618, 729, 1867
BstDSI CCRYGG 3 cut(s) 502, 988, 1387
BstEII GGTNACC 1 cut(s) 1414
BstENI CCTNNNNNAGG 2 cut(s) 621, 1701
BstF5I GGATG 5 cut(s) 37, 315, 442, 1273, 1486
BstFNI CGCG 2 cut(s) 1549, 1598
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 2 cut(s) 355, 1600
BstKTI GATC 5 cut(s) 127, 233, 286, 1228, 1333
BstMAI GTCTC 8 cut(s) 204, 614, 616, 738, 848, 987, 1024, 1331
BstMBI GATC 5 cut(s) 124, 230, 283, 1225, 1330
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 2 cut(s) 24, 156
BstNSI RCATGY 1 cut(s) 1604
BstPI GGTNACC 1 cut(s) 1414
BstSCI CCNGG 5 cut(s) 22, 154, 243, 275, 977
BstSFI CTRYAG 2 cut(s) 1047, 1173
BstSNI TACGTA 1 cut(s) 835
BstUI CGCG 2 cut(s) 1549, 1598
BstV1I GCAGC 2 cut(s) 156, 1705
BstZ17I GTATAC 1 cut(s) 431
BsuI GTATCC 1 cut(s) 615
BtgI CCRYGG 3 cut(s) 502, 988, 1387
BtgZI GCGATG 1 cut(s) 1431
BtrI CACGTC 1 cut(s) 711
BtsCI GGATG 5 cut(s) 37, 315, 442, 1273, 1486
BtsI GCAGTG 1 cut(s) 1681
BtsIMutI CAGTG 1 cut(s) 1681
BveI ACCTGC 1 cut(s) 248
CciI TCATGA 3 cut(s) 1222, 1333, 1734
CfoI GCGC 2 cut(s) 355, 1600
Csp6I GTAC 6 cut(s) 369, 391, 507, 555, 821, 1442
CviQI GTAC 6 cut(s) 369, 391, 507, 555, 821, 1442
DdeI CTNAG 3 cut(s) 618, 729, 1867
DpnI GATC 5 cut(s) 126, 232, 285, 1227, 1332
DpnII GATC 5 cut(s) 124, 230, 283, 1225, 1330
DraIII CACNNNGTG 1 cut(s) 1069
Eam1104I CTCTTC 3 cut(s) 45, 343, 461
EarI CTCTTC 3 cut(s) 45, 343, 461
Eco105I TACGTA 1 cut(s) 835
Eco130I CCWWGG 4 cut(s) 143, 502, 988, 1387
Eco31I GGTCTC 2 cut(s) 204, 848
Eco32I GATATC 1 cut(s) 1193
Eco88I CYCGRG 5 cut(s) 116, 207, 598, 1283, 1687
Eco91I GGTNACC 1 cut(s) 1414
EcoNI CCTNNNNNAGG 2 cut(s) 621, 1701
EcoO65I GGTNACC 1 cut(s) 1414
EcoRII CCWGG 2 cut(s) 22, 154
EcoRV GATATC 1 cut(s) 1193
EcoT14I CCWWGG 4 cut(s) 143, 502, 988, 1387
ErhI CCWWGG 4 cut(s) 143, 502, 988, 1387
FalI AAGNNNNNCTT 2 cut(s) 1074, 1106
FaqI GGGAC 1 cut(s) 974
FbaI TGATCA 1 cut(s) 1225
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 170, 1694
FokI GGATG 5 cut(s) 24, 322, 449, 1280, 1493
Fsp4HI GCNGC 2 cut(s) 170, 1694
FspBI CTAG 4 cut(s) 185, 552, 950, 1028
GlaI GCGC 2 cut(s) 354, 1599
GluI GCNGC 2 cut(s) 170, 1694
GsuI CTGGAG 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 356
HapII CCGG 7 cut(s) 31, 214, 244, 276, 426, 978, 1008
HhaI GCGC 2 cut(s) 355, 1600
Hin6I GCGC 2 cut(s) 353, 1598
HinP1I GCGC 2 cut(s) 353, 1598
HincII GTYRAC 2 cut(s) 1246, 1798
HindII GTYRAC 2 cut(s) 1246, 1798
HinfI GANTC 5 cut(s) 416, 688, 953, 1312, 1551
HpaI GTTAAC 1 cut(s) 1246
HpaII CCGG 7 cut(s) 31, 214, 244, 276, 426, 978, 1008
HphI GGTGA 1 cut(s) 606
Hpy166II GTNNAC 4 cut(s) 431, 539, 1246, 1798
Hpy188I TCNGA 5 cut(s) 93, 571, 661, 1294, 1476
Hpy8I GTNNAC 4 cut(s) 431, 539, 1246, 1798
Hpy99I CGWCG 3 cut(s) 658, 661, 1480
HpyAV CCTTC 4 cut(s) 724, 760, 833, 1673
HpyCH4III ACNGT 6 cut(s) 395, 947, 965, 1165, 1456, 1573
HpyCH4IV ACGT 4 cut(s) 710, 834, 1038, 1242
HpyCH4V TGCA 4 cut(s) 385, 446, 791, 1057
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 618, 729, 1867
HpySE526I ACGT 4 cut(s) 710, 834, 1038, 1242
HspAI GCGC 2 cut(s) 353, 1598
Kpn2I TCCGGA 1 cut(s) 1007
Ksp22I TGATCA 1 cut(s) 1225
KspAI GTTAAC 1 cut(s) 1246
Kzo9I GATC 5 cut(s) 124, 230, 283, 1225, 1330
LguI GCTCTTC 2 cut(s) 45, 343
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 156, 1705
LweI GCATC 3 cut(s) 427, 1261, 1623
MaeI CTAG 4 cut(s) 185, 552, 950, 1028
MaeII ACGT 4 cut(s) 710, 834, 1038, 1242
MaeIII GTNAC 8 cut(s) 260, 292, 413, 1399, 1414, 1652, 1682, 1712
MalI GATC 5 cut(s) 126, 232, 285, 1227, 1332
MboI GATC 5 cut(s) 124, 230, 283, 1225, 1330
MluCI AATT 6 cut(s) 486, 649, 1072, 1167, 1592, 1764
MlyI GAGTC 3 cut(s) 410, 697, 947
MmeI TCCRAC 6 cut(s) 65, 71, 295, 639, 1456, 1499
MroI TCCGGA 1 cut(s) 1007
MseI TTAA 6 cut(s) 84, 462, 632, 999, 1077, 1245
MslI CAYNNNNRTG 1 cut(s) 1619
MspI CCGG 7 cut(s) 31, 214, 244, 276, 426, 978, 1008
MspR9I CCNGG 5 cut(s) 24, 156, 245, 277, 979
MvaI CCWGG 2 cut(s) 24, 156
MvnI CGCG 2 cut(s) 1549, 1598
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 3 cut(s) 245, 277, 979
NcoI CCATGG 3 cut(s) 502, 988, 1387
NdeII GATC 5 cut(s) 124, 230, 283, 1225, 1330
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 292, 413, 1399
NspI RCATGY 1 cut(s) 1604
PaeR7I CTCGAG 3 cut(s) 207, 1283, 1687
PagI TCATGA 3 cut(s) 1222, 1333, 1734
PciSI GCTCTTC 2 cut(s) 45, 343
PcsI WCGNNNNNNNCGW 2 cut(s) 707, 1305
PfeI GAWTC 2 cut(s) 1312, 1551
PfoI TCCNGGA 1 cut(s) 977
PkrI GCNGC 2 cut(s) 171, 1695
PleI GAGTC 3 cut(s) 410, 696, 947
PpsI GAGTC 3 cut(s) 410, 696, 947
Ppu21I YACGTR 1 cut(s) 835
PshBI ATTAAT 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 22, 154
PspEI GGTNACC 1 cut(s) 1414
PspGI CCWGG 2 cut(s) 22, 154
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 2 cut(s) 1283, 1687
RsaI GTAC 6 cut(s) 370, 392, 508, 556, 822, 1443
RsaNI GTAC 6 cut(s) 369, 391, 507, 555, 821, 1442
RseI CAYNNNNRTG 1 cut(s) 1619
SapI GCTCTTC 2 cut(s) 45, 343
SaqAI TTAA 6 cut(s) 84, 462, 632, 999, 1077, 1245
SatI GCNGC 2 cut(s) 170, 1694
Sau3AI GATC 5 cut(s) 124, 230, 283, 1225, 1330
ScaI AGTACT 1 cut(s) 556
SchI GAGTC 3 cut(s) 410, 697, 947
ScrFI CCNGG 5 cut(s) 24, 156, 245, 277, 979
SfaNI GCATC 3 cut(s) 427, 1261, 1623
SfcI CTRYAG 2 cut(s) 1047, 1173
Sfr274I CTCGAG 3 cut(s) 207, 1283, 1687
SlaI CTCGAG 3 cut(s) 207, 1283, 1687
SmiMI CAYNNNNRTG 1 cut(s) 1619
SmlI CTYRAG 6 cut(s) 71, 207, 921, 1102, 1283, 1687
SmoI CTYRAG 6 cut(s) 71, 207, 921, 1102, 1283, 1687
SnaBI TACGTA 1 cut(s) 835
Sse9I AATT 6 cut(s) 486, 649, 1072, 1167, 1592, 1764
SsiI CCGC 1 cut(s) 1547
SspI AATATT 1 cut(s) 860
SspMI CTAG 4 cut(s) 185, 552, 950, 1028
StyD4I CCNGG 5 cut(s) 22, 154, 243, 275, 977
StyI CCWWGG 4 cut(s) 143, 502, 988, 1387
TaaI ACNGT 6 cut(s) 395, 947, 965, 1165, 1456, 1573
TaiI ACGT 4 cut(s) 713, 837, 1041, 1245
TaqI TCGA 7 cut(s) 208, 454, 591, 764, 1284, 1648, 1688
TasI AATT 6 cut(s) 486, 649, 1072, 1167, 1592, 1764
TatI WGTACW 1 cut(s) 554
TfiI GAWTC 2 cut(s) 1312, 1551
Tru1I TTAA 6 cut(s) 84, 462, 632, 999, 1077, 1245
Tru9I TTAA 6 cut(s) 84, 462, 632, 999, 1077, 1245
TscAI CASTG 1 cut(s) 1681
TseFI GTSAC 3 cut(s) 292, 413, 1399
TseI GCWGC 2 cut(s) 169, 1693
Tsp45I GTSAC 3 cut(s) 292, 413, 1399
TspDTI ATGAA 7 cut(s) 26, 597, 870, 906, 1514, 1603, 1634
TspGWI ACGGA 5 cut(s) 243, 322, 1493, 1520, 1572
TspRI CASTG 1 cut(s) 1681
VspI ATTAAT 1 cut(s) 84
XagI CCTNNNNNAGG 2 cut(s) 621, 1701
XapI RAATTY 3 cut(s) 1072, 1592, 1764
XbaI TCTAGA 1 cut(s) 949
XceI RCATGY 1 cut(s) 1604
XhoI CTCGAG 3 cut(s) 207, 1283, 1687
XmiI GTMKAC 1 cut(s) 430
XspI CTAG 4 cut(s) 185, 552, 950, 1028
ZrmI AGTACT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.