Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006246.1

Orthogroup ID

OG0008042

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1179

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006246.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

gatgcatatgcgctctgccgaatttttaagaagactgcaactgggccaaagataggagagcattatggtagcacaagtagtactactaattatcaacttgccagtgaccaccattcgtctagcgttgagctatactctgattcaagaggtgatcaagattttgagagctcccgctacaataatcagatggcaatgaatactccatgctcttcaaacatggttcatacatcctcttcatcttcttttgatcatatgggtagaaagagagatggaaaatggacccagttcttatcgaaggacgcatttaatagcttttcctcatttcccaatcagggagccatttcttaccctacatctaaggttgatatagcattggagtgtgcaaggctgcagcatcggctcacacttcctccgttagaagtggaggattttcctcatgttgggtttaccgacttcaaaaccctgcaatattcagatcctggacttgagggcacaggtacagaaactgatgcgttgcaagaaattctctcagttgcgcatgtttctcaagagatgataaatcagtccagtaattttgcggatcaaacatggggttctgcaaactatgttccaggagccaatgatttcagctttatggttgacagagatgctcactataatcagattacaactcatcatgacatgaatcctatgagatatgtggacaagccgtgggaaaattcatatattagatcaattgaaattggagatttggaggatgatgatttcaggacagacaatacaacggagaatctgaggtggataggaatgtcagacaaagatttggagaaggtatcacaagtcatcaaacttaatctgcatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090601 GO:0090602 GO:0090603 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

288

Amino Acids

32.52

Weight (kDa)

4.99

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65910
fragaria_vesca	FvH4_1g27330 FvH4_1g27330 FvH4_1g27330
malus_domestica	MD06G1236800.v1.1 MD09G1279900.v1.1 MD17G1286600.v1.1
prunus_persica	Prupe.3G014400_v2.0.a1 Prupe.3G014400_v2.0.a1 Prupe.3G014400_v2.0.a1 Prupe.3G014400_v2.0.a1
pyrus_communis	pycom09g18810 pycom17g27000
rosa_chinensis	RchiOBHm_Chr3g0488761
rosa_laevigata	RLG00000022923
rosa_multiflora	Rmu_sc0006246.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393880
rosa_rugosa	Rorug03G0241500 Rorug03G0241500
rosa_samantha	Rh3AG289600 Rh3BG326600 Rh3CG324100 Rh3DG322500
rosa_wichuraiana	Rw3G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	537
AciI	CCGC	2 cut(s)	172, 578
AclWI	GGATC	2 cut(s)	470, 588
AcsI	RAATTY	3 cut(s)	21, 522, 718
AfaI	GTAC	2 cut(s)	82, 499
AfiI	CCNNNNNNNGG	3 cut(s)	53, 332, 440
AgsI	TTSAA	4 cut(s)	144, 213, 457, 740
AjnI	CCWGG	2 cut(s)	478, 610
AluBI	AGCT	4 cut(s)	130, 168, 312, 630
AluI	AGCT	4 cut(s)	130, 168, 312, 630
Alw21I	GWGCWC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	470, 588
AlwNI	CAGNNNCTG	2 cut(s)	479, 506
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	388, 391
ApoI	RAATTY	3 cut(s)	21, 522, 718
AspLEI	GCGC	2 cut(s)	13, 538
AspS9I	GGNCC	2 cut(s)	44, 279
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	375, 403
BccI	CCATC	2 cut(s)	181, 263
BceAI	ACGGC	1 cut(s)	694
BciT130I	CCWGG	2 cut(s)	480, 612
BclI	TGATCA	2 cut(s)	151, 247
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	389
BisI	GCNGC	2 cut(s)	389, 392
BlsI	GCNGC	2 cut(s)	390, 393
BmcAI	AGTACT	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	480, 612
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	44, 279
BmiI	GGNNCC	3 cut(s)	281, 337, 616
BmrFI	CCNGG	2 cut(s)	480, 612
BmrI	ACTGGG	2 cut(s)	51, 277
BmsI	GCATC	3 cut(s)	403, 499, 637
BmuI	ACTGGG	2 cut(s)	51, 277
BpiI	GAAGAC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpuEI	CTTGAG	2 cut(s)	506, 531
BsaJI	CCNNGG	1 cut(s)	710
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 332, 440
Bse1I	ACTGG	4 cut(s)	46, 102, 283, 567
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	480, 612
BseDI	CCNNGG	1 cut(s)	710
BseGI	GGATG	2 cut(s)	227, 763
BseLI	CCNNNNNNNGG	3 cut(s)	53, 332, 440
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	543, 785
BseNI	ACTGG	4 cut(s)	46, 102, 283, 567
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	375, 403
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	53, 332, 440
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	170, 494
Bsp143I	GATC	5 cut(s)	151, 247, 475, 580, 731
BspACI	CCGC	2 cut(s)	172, 578
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	542, 786
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	281, 337, 616
BspMAI	CTGCAG	1 cut(s)	393
BspPI	GGATC	2 cut(s)	470, 588
BspQI	GCTCTTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	4 cut(s)	46, 102, 283, 567
BssECI	CCNNGG	1 cut(s)	710
BssMI	GATC	5 cut(s)	151, 247, 475, 580, 731
Bst2UI	CCWGG	2 cut(s)	480, 612
Bst6I	CTCTTC	2 cut(s)	214, 238
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	3 cut(s)	357, 529, 794
BstDSI	CCRYGG	1 cut(s)	710
BstF5I	GGATG	2 cut(s)	227, 763
BstHHI	GCGC	2 cut(s)	13, 538
BstKTI	GATC	5 cut(s)	154, 250, 478, 583, 734
BstMBI	GATC	5 cut(s)	151, 247, 475, 580, 731
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	2 cut(s)	480, 612
BstNSI	RCATGY	2 cut(s)	542, 863
BstSCI	CCNGG	2 cut(s)	478, 610
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	375, 403
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	710
BtsCI	GGATG	2 cut(s)	227, 763
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	861
CaiI	CAGNNNCTG	2 cut(s)	479, 506
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	2 cut(s)	13, 538
Cfr13I	GGNCC	2 cut(s)	44, 279
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	81, 498
CviAII	CATG	9 cut(s)	204, 217, 437, 539, 588, 677, 682, 860, 864
CviQI	GTAC	2 cut(s)	81, 498
DdeI	CTNAG	3 cut(s)	357, 529, 794
DpnI	GATC	5 cut(s)	153, 249, 477, 582, 733
DpnII	GATC	5 cut(s)	151, 247, 475, 580, 731
Eam1104I	CTCTTC	2 cut(s)	214, 238
EarI	CTCTTC	2 cut(s)	214, 238
Ecl136II	GAGCTC	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	478, 610
EcoT22I	ATGCAT	2 cut(s)	7, 865
EcoT38I	GRGCYC	1 cut(s)	170
FaeI	CATG	9 cut(s)	207, 220, 440, 542, 591, 680, 685, 863, 867
FatI	CATG	9 cut(s)	203, 216, 436, 538, 587, 676, 681, 859, 863
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	2 cut(s)	7, 252
FbaI	TGATCA	2 cut(s)	151, 247
Fnu4HI	GCNGC	2 cut(s)	389, 392
FokI	GGATG	2 cut(s)	214, 770
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	389, 392
FspBI	CTAG	1 cut(s)	120
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	2 cut(s)	12, 537
GluI	GCNGC	2 cut(s)	389, 392
HaeIII	GGCC	1 cut(s)	46
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	2 cut(s)	13, 538
Hin1II	CATG	9 cut(s)	207, 220, 440, 542, 591, 680, 685, 863, 867
Hin6I	GCGC	2 cut(s)	11, 536
HinP1I	GCGC	2 cut(s)	11, 536
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	3 cut(s)	140, 685, 790
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	3 cut(s)	447, 640, 703
Hpy188I	TCNGA	6 cut(s)	139, 186, 475, 663, 795, 814
Hpy188III	TCNNGA	5 cut(s)	144, 155, 548, 677, 769
Hpy8I	GTNNAC	3 cut(s)	447, 640, 703
HpyAV	CCTTC	2 cut(s)	289, 823
HpyCH4V	TGCA	9 cut(s)	5, 38, 383, 391, 466, 517, 599, 859, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	3 cut(s)	357, 529, 794
Hsp92II	CATG	9 cut(s)	207, 220, 440, 542, 591, 680, 685, 863, 867
HspAI	GCGC	2 cut(s)	11, 536
Ksp22I	TGATCA	2 cut(s)	151, 247
Kzo9I	GATC	5 cut(s)	151, 247, 475, 580, 731
LguI	GCTCTTC	1 cut(s)	214
LmnI	GCTCC	3 cut(s)	173, 335, 614
Lsp1109I	GCAGC	2 cut(s)	375, 403
LweI	GCATC	3 cut(s)	403, 499, 637
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	5 cut(s)	153, 249, 477, 582, 733
MboI	GATC	5 cut(s)	151, 247, 475, 580, 731
MboII	GAAGA	4 cut(s)	43, 201, 225, 231
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	170, 494
MluCI	AATT	7 cut(s)	21, 88, 522, 571, 718, 735, 741
MnlI	CCTC	9 cut(s)	140, 241, 328, 418, 420, 444, 481, 748, 789
Mph1103I	ATGCAT	2 cut(s)	7, 865
MseI	TTAA	3 cut(s)	27, 306, 852
MslI	CAYNNNNRTG	1 cut(s)	376
MspR9I	CCNGG	2 cut(s)	480, 612
MunI	CAATTG	1 cut(s)	735
MvaI	CCWGG	2 cut(s)	480, 612
MwoI	GCNNNNNNNGC	1 cut(s)	397
NdeI	CATATG	2 cut(s)	7, 252
NdeII	GATC	5 cut(s)	151, 247, 475, 580, 731
NlaIII	CATG	9 cut(s)	207, 220, 440, 542, 591, 680, 685, 863, 867
NlaIV	GGNNCC	3 cut(s)	281, 337, 616
NmuCI	GTSAC	1 cut(s)	104
NsbI	TGCGCA	1 cut(s)	537
NsiI	ATGCAT	2 cut(s)	7, 865
NspI	RCATGY	2 cut(s)	542, 863
PaeI	GCATGC	1 cut(s)	863
PagI	TCATGA	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	140, 685, 790
PfoI	TCCNGGA	2 cut(s)	478, 610
PkrI	GCNGC	2 cut(s)	390, 393
Psp124BI	GAGCTC	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	478, 610
PspGI	CCWGG	2 cut(s)	478, 610
PspN4I	GGNNCC	3 cut(s)	281, 337, 616
PspPI	GGNCC	2 cut(s)	44, 279
PstI	CTGCAG	1 cut(s)	393
PstNI	CAGNNNCTG	2 cut(s)	479, 506
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	2 cut(s)	82, 499
RsaNI	GTAC	2 cut(s)	81, 498
RseI	CAYNNNNRTG	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	27, 306, 852
SatI	GCNGC	2 cut(s)	389, 392
Sau3AI	GATC	5 cut(s)	151, 247, 475, 580, 731
Sau96I	GGNCC	2 cut(s)	44, 279
ScaI	AGTACT	1 cut(s)	82
ScrFI	CCNGG	2 cut(s)	480, 612
SduI	GDGCHC	2 cut(s)	170, 494
SetI	ASST	9 cut(s)	132, 151, 170, 314, 363, 499, 632, 800, 834
SfaNI	GCATC	3 cut(s)	403, 499, 637
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	485, 546
SmoI	CTYRAG	2 cut(s)	485, 546
SphI	GCATGC	1 cut(s)	863
Sse9I	AATT	7 cut(s)	21, 88, 522, 571, 718, 735, 741
SsiI	CCGC	2 cut(s)	172, 578
SspI	AATATT	1 cut(s)	470
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	478, 610
TaqI	TCGA	1 cut(s)	293
TasI	AATT	7 cut(s)	21, 88, 522, 571, 718, 735, 741
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	140, 685, 790
Tru1I	TTAA	3 cut(s)	27, 306, 852
Tru9I	TTAA	3 cut(s)	27, 306, 852
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	388, 391
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	5 cut(s)	209, 212, 225, 698, 711
TspGWI	ACGGA	2 cut(s)	402, 800
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	3 cut(s)	21, 522, 718
XceI	RCATGY	2 cut(s)	542, 863
XspI	CTAG	1 cut(s)	120
ZrmI	AGTACT	1 cut(s)	82
Zsp2I	ATGCAT	2 cut(s)	7, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.