NAC domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G65910 |
| fragaria_vesca | FvH4_1g27330 FvH4_1g27330 FvH4_1g27330 |
| malus_domestica | MD06G1236800.v1.1 MD09G1279900.v1.1 MD17G1286600.v1.1 |
| prunus_persica | Prupe.3G014400_v2.0.a1 Prupe.3G014400_v2.0.a1 Prupe.3G014400_v2.0.a1 Prupe.3G014400_v2.0.a1 |
| pyrus_communis | pycom09g18810 pycom17g27000 |
| rosa_chinensis | RchiOBHm_Chr3g0488761 |
| rosa_laevigata | RLG00000022923 |
| rosa_multiflora | Rmu_sc0006246.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00393880 |
| rosa_rugosa | Rorug03G0241500 Rorug03G0241500 |
| rosa_samantha | Rh3AG289600 Rh3BG326600 Rh3CG324100 Rh3DG322500 |
| rosa_wichuraiana | Rw3G025650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1092 |
| AarI | CACCTGC | 1 cut(s) | 1543 |
| Acc36I | ACCTGC | 2 cut(s) | 424, 1543 |
| Acc65I | GGTACC | 1 cut(s) | 2048 |
| AccB1I | GGYRCC | 1 cut(s) | 2048 |
| AccI | GTMKAC | 1 cut(s) | 1157 |
| AccII | CGCG | 2 cut(s) | 307, 446 |
| AciI | CCGC | 2 cut(s) | 286, 311 |
| AclI | AACGTT | 1 cut(s) | 777 |
| AclWI | GGATC | 2 cut(s) | 238, 1026 |
| AcoI | YGGCCR | 2 cut(s) | 88, 1624 |
| AcsI | RAATTY | 5 cut(s) | 667, 960, 1114, 1150, 1897 |
| AcuI | CTGAAG | 4 cut(s) | 138, 184, 1205, 2027 |
| AfaI | GTAC | 4 cut(s) | 221, 520, 937, 2050 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 494, 878, 1622 |
| AflIII | ACRYGT | 3 cut(s) | 305, 444, 976 |
| AgsI | TTSAA | 6 cut(s) | 895, 1114, 1485, 1520, 1545, 1699 |
| AjnI | CCWGG | 3 cut(s) | 22, 154, 1354 |
| AluBI | AGCT | 8 cut(s) | 116, 257, 535, 606, 1065, 1214, 1263, 1497 |
| AluI | AGCT | 8 cut(s) | 116, 257, 535, 606, 1065, 1214, 1263, 1497 |
| Alw21I | GWGCWC | 2 cut(s) | 355, 608 |
| Alw26I | GTCTC | 1 cut(s) | 1173 |
| AlwI | GGATC | 2 cut(s) | 238, 1026 |
| AoxI | GGCC | 3 cut(s) | 88, 485, 1624 |
| ApeKI | GCWGC | 1 cut(s) | 826 |
| ApoI | RAATTY | 5 cut(s) | 667, 960, 1114, 1150, 1897 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 93, 125 |
| AseI | ATTAAT | 2 cut(s) | 84, 1931 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1262, 1515 |
| Asp718I | GGTACC | 1 cut(s) | 2048 |
| AspS9I | GGNCC | 5 cut(s) | 237, 283, 485, 1352, 1603 |
| AsuHPI | GGTGA | 4 cut(s) | 639, 877, 1565, 1849 |
| AsuII | TTCGAA | 2 cut(s) | 367, 1500 |
| AvaII | GGWCC | 4 cut(s) | 237, 283, 1352, 1603 |
| BanI | GGYRCC | 1 cut(s) | 2048 |
| BanII | GRGCYC | 1 cut(s) | 608 |
| BauI | CACGAG | 1 cut(s) | 207 |
| BbsI | GAAGAC | 2 cut(s) | 479, 1443 |
| Bbv12I | GWGCWC | 2 cut(s) | 355, 608 |
| BbvI | GCAGC | 1 cut(s) | 813 |
| BceAI | ACGGC | 2 cut(s) | 75, 1546 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 374, 408, 607, 641 |
| BciT130I | CCWGG | 3 cut(s) | 24, 156, 1356 |
| BciVI | GTATCC | 1 cut(s) | 254 |
| BclI | TGATCA | 2 cut(s) | 1105, 1806 |
| BcoDI | GTCTC | 1 cut(s) | 1173 |
| BfaI | CTAG | 1 cut(s) | 332 |
| BfuAI | ACCTGC | 2 cut(s) | 424, 1543 |
| BfuI | GTATCC | 1 cut(s) | 254 |
| BglII | AGATCT | 2 cut(s) | 181, 1249 |
| BisI | GCNGC | 1 cut(s) | 827 |
| BlsI | GCNGC | 1 cut(s) | 828 |
| BmcAI | AGTACT | 2 cut(s) | 520, 937 |
| Bme1390I | CCNGG | 3 cut(s) | 24, 156, 1356 |
| Bme18I | GGWCC | 4 cut(s) | 237, 283, 1352, 1603 |
| BmgT120I | GGNCC | 5 cut(s) | 237, 283, 485, 1352, 1603 |
| BmiI | GGNNCC | 4 cut(s) | 6, 35, 486, 2050 |
| BmrFI | CCNGG | 3 cut(s) | 24, 156, 1356 |
| BmrI | ACTGGG | 1 cut(s) | 1610 |
| BmsI | GCATC | 7 cut(s) | 609, 891, 937, 1072, 1369, 1788, 1840 |
| BmuI | ACTGGG | 1 cut(s) | 1610 |
| BpiI | GAAGAC | 2 cut(s) | 479, 1443 |
| BpmI | CTGGAG | 2 cut(s) | 206, 1274 |
| Bpu14I | TTCGAA | 2 cut(s) | 367, 1500 |
| BpuEI | CTTGAG | 4 cut(s) | 592, 858, 969, 1329 |
| BsaI | GGTCTC | 1 cut(s) | 1173 |
| BsaJI | CCNNGG | 5 cut(s) | 143, 358, 1355, 1668, 1748 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 494, 878, 1622 |
| Bse1I | ACTGG | 5 cut(s) | 269, 540, 1005, 1576, 1616 |
| Bse3DI | GCAATG | 1 cut(s) | 14 |
| BseBI | CCWGG | 3 cut(s) | 24, 156, 1356 |
| BseDI | CCNNGG | 5 cut(s) | 143, 358, 1355, 1668, 1748 |
| BseGI | GGATG | 6 cut(s) | 37, 551, 1195, 1206, 1480, 1855 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 494, 878, 1622 |
| BseMI | GCAATG | 1 cut(s) | 14 |
| BseMII | CTCAG | 1 cut(s) | 1206 |
| BseNI | ACTGG | 5 cut(s) | 269, 540, 1005, 1576, 1616 |
| BseXI | GCAGC | 1 cut(s) | 813 |
| BseYI | CCCAGC | 2 cut(s) | 173, 1048 |
| BsgI | GTGCAG | 3 cut(s) | 405, 903, 1800 |
| Bsh1236I | CGCG | 2 cut(s) | 307, 446 |
| BshFI | GGCC | 3 cut(s) | 90, 487, 1626 |
| BshNI | GGYRCC | 1 cut(s) | 2048 |
| BsiHKAI | GWGCWC | 2 cut(s) | 355, 608 |
| BslFI | GGGAC | 1 cut(s) | 161 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 494, 878, 1622 |
| BsmAI | GTCTC | 1 cut(s) | 1173 |
| BsmFI | GGGAC | 1 cut(s) | 161 |
| BsmI | GAATGC | 1 cut(s) | 363 |
| BsnI | GGCC | 3 cut(s) | 90, 487, 1626 |
| Bso31I | GGTCTC | 1 cut(s) | 1173 |
| Bsp119I | TTCGAA | 2 cut(s) | 367, 1500 |
| Bsp1286I | GDGCHC | 2 cut(s) | 355, 608 |
| Bsp143I | GATC | 9 cut(s) | 96, 124, 181, 211, 230, 1018, 1105, 1249, 1806 |
| Bsp19I | CCATGG | 3 cut(s) | 143, 358, 1748 |
| BspACI | CCGC | 2 cut(s) | 286, 311 |
| BspANI | GGCC | 3 cut(s) | 90, 487, 1626 |
| BspCNI | CTCAG | 1 cut(s) | 1207 |
| BspFNI | CGCG | 2 cut(s) | 307, 446 |
| BspHI | TCATGA | 1 cut(s) | 769 |
| BspLI | GGNNCC | 4 cut(s) | 6, 35, 486, 2050 |
| BspMI | ACCTGC | 2 cut(s) | 424, 1543 |
| BspPI | GGATC | 2 cut(s) | 238, 1026 |
| BspQI | GCTCTTC | 4 cut(s) | 343, 646, 1253, 1320 |
| BspT104I | TTCGAA | 2 cut(s) | 367, 1500 |
| BspT107I | GGYRCC | 1 cut(s) | 2048 |
| BspTNI | GGTCTC | 1 cut(s) | 1173 |
| BsrDI | GCAATG | 1 cut(s) | 14 |
| BsrI | ACTGG | 5 cut(s) | 269, 540, 1005, 1576, 1616 |
| BssECI | CCNNGG | 5 cut(s) | 143, 358, 1355, 1668, 1748 |
| BssMI | GATC | 9 cut(s) | 96, 124, 181, 211, 230, 1018, 1105, 1249, 1806 |
| BssNAI | GTATAC | 1 cut(s) | 1158 |
| BssSI | CACGAG | 1 cut(s) | 207 |
| BssT1I | CCWWGG | 3 cut(s) | 143, 358, 1748 |
| Bst1107I | GTATAC | 1 cut(s) | 1158 |
| Bst2BI | CACGAG | 1 cut(s) | 207 |
| Bst2UI | CCWGG | 3 cut(s) | 24, 156, 1356 |
| Bst4CI | ACNGT | 5 cut(s) | 509, 714, 1164, 1597, 2032 |
| Bst6I | CTCTTC | 4 cut(s) | 343, 646, 1253, 1320 |
| BstBI | TTCGAA | 2 cut(s) | 367, 1500 |
| BstC8I | GCNNGC | 5 cut(s) | 309, 431, 637, 743, 1765 |
| BstDEI | CTNAG | 4 cut(s) | 795, 1215, 1223, 1421 |
| BstDSI | CCRYGG | 3 cut(s) | 143, 358, 1748 |
| BstF5I | GGATG | 6 cut(s) | 37, 551, 1195, 1206, 1480, 1855 |
| BstFNI | CGCG | 2 cut(s) | 307, 446 |
| BstKTI | GATC | 9 cut(s) | 99, 127, 184, 214, 233, 1021, 1108, 1252, 1809 |
| BstMAI | GTCTC | 1 cut(s) | 1173 |
| BstMBI | GATC | 9 cut(s) | 96, 124, 181, 211, 230, 1018, 1105, 1249, 1806 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 254, 1049 |
| BstNI | CCWGG | 3 cut(s) | 24, 156, 1356 |
| BstNSI | RCATGY | 3 cut(s) | 639, 980, 1537 |
| BstSCI | CCNGG | 3 cut(s) | 22, 154, 1354 |
| BstUI | CGCG | 2 cut(s) | 307, 446 |
| BstV1I | GCAGC | 1 cut(s) | 813 |
| BstV2I | GAAGAC | 2 cut(s) | 479, 1443 |
| BstX2I | RGATCY | 2 cut(s) | 181, 1249 |
| BstYI | RGATCY | 2 cut(s) | 181, 1249 |
| BstZ17I | GTATAC | 1 cut(s) | 1158 |
| BsuI | GTATCC | 1 cut(s) | 254 |
| BsuRI | GGCC | 3 cut(s) | 90, 487, 1626 |
| BtgI | CCRYGG | 3 cut(s) | 143, 358, 1748 |
| BtsCI | GGATG | 6 cut(s) | 37, 551, 1195, 1206, 1480, 1855 |
| BtsIMutI | CAGTG | 2 cut(s) | 547, 1623 |
| BveI | ACCTGC | 2 cut(s) | 424, 1543 |
| Cac8I | GCNNGC | 5 cut(s) | 309, 431, 637, 743, 1765 |
| CciI | TCATGA | 1 cut(s) | 769 |
| Cfr13I | GGNCC | 5 cut(s) | 237, 283, 485, 1352, 1603 |
| CseI | GACGC | 2 cut(s) | 313, 452 |
| Csp6I | GTAC | 4 cut(s) | 220, 519, 936, 2049 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1863, 1898 |
| CviQI | GTAC | 4 cut(s) | 220, 519, 936, 2049 |
| DdeI | CTNAG | 4 cut(s) | 795, 1215, 1223, 1421 |
| DpnI | GATC | 9 cut(s) | 98, 126, 183, 213, 232, 1020, 1107, 1251, 1808 |
| DpnII | GATC | 9 cut(s) | 96, 124, 181, 211, 230, 1018, 1105, 1249, 1806 |
| EaeI | YGGCCR | 2 cut(s) | 88, 1624 |
| Eam1104I | CTCTTC | 4 cut(s) | 343, 646, 1253, 1320 |
| EarI | CTCTTC | 4 cut(s) | 343, 646, 1253, 1320 |
| Ecl136II | GAGCTC | 1 cut(s) | 606 |
| Eco130I | CCWWGG | 3 cut(s) | 143, 358, 1748 |
| Eco24I | GRGCYC | 1 cut(s) | 608 |
| Eco31I | GGTCTC | 1 cut(s) | 1173 |
| Eco47I | GGWCC | 4 cut(s) | 237, 283, 1352, 1603 |
| Eco53kI | GAGCTC | 1 cut(s) | 606 |
| Eco57I | CTGAAG | 4 cut(s) | 138, 184, 1205, 2027 |
| EcoICRI | GAGCTC | 1 cut(s) | 606 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1352 |
| EcoRI | GAATTC | 1 cut(s) | 1114 |
| EcoRII | CCWGG | 3 cut(s) | 22, 154, 1354 |
| EcoT14I | CCWWGG | 3 cut(s) | 143, 358, 1748 |
| EcoT22I | ATGCAT | 3 cut(s) | 387, 630, 637 |
| EcoT38I | GRGCYC | 1 cut(s) | 608 |
| ErhI | CCWWGG | 3 cut(s) | 143, 358, 1748 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1949, 1981 |
| FaqI | GGGAC | 1 cut(s) | 161 |
| FauNDI | CATATG | 1 cut(s) | 1827 |
| FbaI | TGATCA | 2 cut(s) | 1105, 1806 |
| FblI | GTMKAC | 1 cut(s) | 1157 |
| Fnu4HI | GCNGC | 1 cut(s) | 827 |
| FokI | GGATG | 6 cut(s) | 24, 538, 1202, 1213, 1487, 1862 |
| FriOI | GRGCYC | 1 cut(s) | 608 |
| Fsp4HI | GCNGC | 1 cut(s) | 827 |
| FspBI | CTAG | 1 cut(s) | 332 |
| GluI | GCNGC | 1 cut(s) | 827 |
| GsaI | CCCAGC | 2 cut(s) | 177, 1052 |
| GsuI | CTGGAG | 2 cut(s) | 206, 1274 |
| HaeIII | GGCC | 3 cut(s) | 90, 487, 1626 |
| HgaI | GACGC | 2 cut(s) | 313, 452 |
| HincII | GTYRAC | 2 cut(s) | 802, 1075 |
| HindII | GTYRAC | 2 cut(s) | 802, 1075 |
| HindIII | AAGCTT | 1 cut(s) | 1495 |
| HinfI | GANTC | 2 cut(s) | 837, 882 |
| HphI | GGTGA | 4 cut(s) | 639, 877, 1565, 1849 |
| Hpy166II | GTNNAC | 5 cut(s) | 206, 295, 802, 1075, 1158 |
| Hpy188I | TCNGA | 7 cut(s) | 577, 618, 1023, 1098, 1243, 1669, 2007 |
| Hpy188III | TCNNGA | 8 cut(s) | 185, 440, 601, 770, 986, 1171, 1253, 2082 |
| Hpy8I | GTNNAC | 5 cut(s) | 206, 295, 802, 1075, 1158 |
| Hpy99I | CGWCG | 1 cut(s) | 404 |
| HpyAV | CCTTC | 6 cut(s) | 262, 1180, 1596, 1864, 1909, 1913 |
| HpyCH4III | ACNGT | 5 cut(s) | 509, 714, 1164, 1597, 2032 |
| HpyCH4IV | ACGT | 1 cut(s) | 777 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 254, 1049 |
| HpyF3I | CTNAG | 4 cut(s) | 795, 1215, 1223, 1421 |
| HpySE526I | ACGT | 1 cut(s) | 777 |
| KpnI | GGTACC | 1 cut(s) | 2052 |
| Ksp22I | TGATCA | 2 cut(s) | 1105, 1806 |
| Kzo9I | GATC | 9 cut(s) | 96, 124, 181, 211, 230, 1018, 1105, 1249, 1806 |
| LguI | GCTCTTC | 4 cut(s) | 343, 646, 1253, 1320 |
| LmnI | GCTCC | 3 cut(s) | 10, 1048, 1941 |
| Lsp1109I | GCAGC | 1 cut(s) | 813 |
| LweI | GCATC | 7 cut(s) | 609, 891, 937, 1072, 1369, 1788, 1840 |
| MaeI | CTAG | 1 cut(s) | 332 |
| MaeII | ACGT | 1 cut(s) | 777 |
| MaeIII | GTNAC | 3 cut(s) | 542, 1651, 1783 |
| MalI | GATC | 9 cut(s) | 98, 126, 183, 213, 232, 1020, 1107, 1251, 1808 |
| MboI | GATC | 9 cut(s) | 96, 124, 181, 211, 230, 1018, 1105, 1249, 1806 |
| MflI | RGATCY | 2 cut(s) | 181, 1249 |
| MhlI | GDGCHC | 2 cut(s) | 355, 608 |
| MluI | ACGCGT | 2 cut(s) | 305, 444 |
| MlyI | GAGTC | 2 cut(s) | 831, 876 |
| MmeI | TCCRAC | 2 cut(s) | 859, 1266 |
| Mph1103I | ATGCAT | 3 cut(s) | 387, 630, 637 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1262, 1515 |
| MseI | TTAA | 8 cut(s) | 84, 468, 561, 735, 1599, 1931, 1935, 1971 |
| MslI | CAYNNNNRTG | 2 cut(s) | 814, 1365 |
| MspA1I | CMGCKG | 2 cut(s) | 535, 1214 |
| MspR9I | CCNGG | 3 cut(s) | 24, 156, 1356 |
| Mva1269I | GAATGC | 1 cut(s) | 363 |
| MvaI | CCWGG | 3 cut(s) | 24, 156, 1356 |
| MvnI | CGCG | 2 cut(s) | 307, 446 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 254, 1049 |
| NcoI | CCATGG | 3 cut(s) | 143, 358, 1748 |
| NdeI | CATATG | 1 cut(s) | 1827 |
| NdeII | GATC | 9 cut(s) | 96, 124, 181, 211, 230, 1018, 1105, 1249, 1806 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 35, 486, 2050 |
| NmeAIII | GCCGAG | 1 cut(s) | 1528 |
| NmuCI | GTSAC | 1 cut(s) | 542 |
| NsiI | ATGCAT | 3 cut(s) | 387, 630, 637 |
| NspI | RCATGY | 3 cut(s) | 639, 980, 1537 |
| NspV | TTCGAA | 2 cut(s) | 367, 1500 |
| PacI | TTAATTAA | 1 cut(s) | 1935 |
| PaeI | GCATGC | 1 cut(s) | 639 |
| PagI | TCATGA | 1 cut(s) | 769 |
| PaqCI | CACCTGC | 1 cut(s) | 1543 |
| PciI | ACATGT | 1 cut(s) | 976 |
| PciSI | GCTCTTC | 4 cut(s) | 343, 646, 1253, 1320 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1506 |
| PctI | GAATGC | 1 cut(s) | 363 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1262, 1515 |
| PkrI | GCNGC | 1 cut(s) | 828 |
| PleI | GAGTC | 2 cut(s) | 831, 876 |
| PpsI | GAGTC | 2 cut(s) | 831, 876 |
| PpuMI | RGGWCCY | 1 cut(s) | 1352 |
| PscI | ACATGT | 1 cut(s) | 976 |
| PshBI | ATTAAT | 2 cut(s) | 84, 1931 |
| PsiI | TTATAA | 1 cut(s) | 1092 |
| Psp124BI | GAGCTC | 1 cut(s) | 608 |
| Psp1406I | AACGTT | 1 cut(s) | 777 |
| Psp5II | RGGWCCY | 1 cut(s) | 1352 |
| Psp6I | CCWGG | 3 cut(s) | 22, 154, 1354 |
| PspFI | CCCAGC | 2 cut(s) | 173, 1048 |
| PspGI | CCWGG | 3 cut(s) | 22, 154, 1354 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 35, 486, 2050 |
| PspPI | GGNCC | 5 cut(s) | 237, 283, 485, 1352, 1603 |
| PspPPI | RGGWCCY | 1 cut(s) | 1352 |
| PsuI | RGATCY | 2 cut(s) | 181, 1249 |
| PvuII | CAGCTG | 2 cut(s) | 535, 1214 |
| RsaI | GTAC | 4 cut(s) | 221, 520, 937, 2050 |
| RsaNI | GTAC | 4 cut(s) | 220, 519, 936, 2049 |
| RseI | CAYNNNNRTG | 2 cut(s) | 814, 1365 |
| SacI | GAGCTC | 1 cut(s) | 608 |
| SapI | GCTCTTC | 4 cut(s) | 343, 646, 1253, 1320 |
| SaqAI | TTAA | 8 cut(s) | 84, 468, 561, 735, 1599, 1931, 1935, 1971 |
| SatI | GCNGC | 1 cut(s) | 827 |
| Sau3AI | GATC | 9 cut(s) | 96, 124, 181, 211, 230, 1018, 1105, 1249, 1806 |
| Sau96I | GGNCC | 5 cut(s) | 237, 283, 485, 1352, 1603 |
| ScaI | AGTACT | 2 cut(s) | 520, 937 |
| SchI | GAGTC | 2 cut(s) | 831, 876 |
| ScrFI | CCNGG | 3 cut(s) | 24, 156, 1356 |
| SduI | GDGCHC | 2 cut(s) | 355, 608 |
| SfaNI | GCATC | 7 cut(s) | 609, 891, 937, 1072, 1369, 1788, 1840 |
| SfuI | TTCGAA | 2 cut(s) | 367, 1500 |
| SinI | GGWCC | 4 cut(s) | 237, 283, 1352, 1603 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 814, 1365 |
| SmlI | CTYRAG | 4 cut(s) | 607, 873, 984, 1344 |
| SmoI | CTYRAG | 4 cut(s) | 607, 873, 984, 1344 |
| SphI | GCATGC | 1 cut(s) | 639 |
| SsiI | CCGC | 2 cut(s) | 286, 311 |
| SspMI | CTAG | 1 cut(s) | 332 |
| SstI | GAGCTC | 1 cut(s) | 608 |
| StyD4I | CCNGG | 3 cut(s) | 22, 154, 1354 |
| StyI | CCWWGG | 3 cut(s) | 143, 358, 1748 |
| TaaI | ACNGT | 5 cut(s) | 509, 714, 1164, 1597, 2032 |
| TaiI | ACGT | 1 cut(s) | 780 |
| TaqII | GACCGA | 1 cut(s) | 1092 |
| TatI | WGTACW | 2 cut(s) | 518, 935 |
| Tru1I | TTAA | 8 cut(s) | 84, 468, 561, 735, 1599, 1931, 1935, 1971 |
| Tru9I | TTAA | 8 cut(s) | 84, 468, 561, 735, 1599, 1931, 1935, 1971 |
| TscAI | CASTG | 2 cut(s) | 547, 1623 |
| TseFI | GTSAC | 1 cut(s) | 542 |
| TseI | GCWGC | 1 cut(s) | 826 |
| Tsp45I | GTSAC | 1 cut(s) | 542 |
| TspDTI | ATGAA | 9 cut(s) | 335, 402, 579, 633, 650, 786, 1293, 1417, 1449 |
| TspGWI | ACGGA | 3 cut(s) | 243, 1283, 1740 |
| TspRI | CASTG | 2 cut(s) | 547, 1623 |
| VpaK11BI | GGWCC | 4 cut(s) | 237, 283, 1352, 1603 |
| VspI | ATTAAT | 2 cut(s) | 84, 1931 |
| XapI | RAATTY | 5 cut(s) | 667, 960, 1114, 1150, 1897 |
| XceI | RCATGY | 3 cut(s) | 639, 980, 1537 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 181, 1012 |
| XmiI | GTMKAC | 1 cut(s) | 1157 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1262, 1515 |
| XspI | CTAG | 1 cut(s) | 332 |
| ZrmI | AGTACT | 2 cut(s) | 520, 937 |
| Zsp2I | ATGCAT | 3 cut(s) | 387, 630, 637 |