Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005605

Physical Location & Seq

Genomic Coordinates Forward (+)

24551807 .. 24557730

Gene Structure 5924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTAGCCGGATTGGCCTTCAAAAGAAAATGGCAGAACAAACGCAAGGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATGTTCAAGTTTGCTGGGAGAAATTCGCTCGGTACTTCGAGGTGGAGCTAAAGGAAGTAAACCTAAGTGAAGGTTACTACGTGATGGATCCAGACAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCAGCCATATTGGGATCCACACTCAACGGTGAGTTCGAAGACGTGAAACGTCTCAATGACTTGCTAGTCAAGAAAAACGAGGAGACTGGTTGGAACACACCGATCCACGTGGATGCAGCAAGTGGAGGGTTCATAGCTCCGTTTATCTATCCTGAATTAGAATGGGACTTTAGGCTTCCTTTGGTTAAGAGCATCAACGTGAGTGGTCACAAGTATGGACTAGTCTATGCTGGTATTGGTTGGGTCGTGTGGAGGGCAGCAGAGGATTTACCTGAAGAGCTTATCTTTCATATTAATTATCTTGGTGCTGATCAACCCACTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTACCAGCTCATTCGTCTTGGATTCGAGGGGTACAAAAATGTGATGGAGAATTGCATAGAGAACATGGTGGTTCTCAAAGAAGGTATAGAGAAAACAGAGCGTTTCAACATAGTCTCAAAGGACCAAGGAGTGCCAGTCGTCGCCTTCTCTCTCAAGGACCATAGTTTCCACAACGAGTTCGAGATCTCTGAGATGCTACGTCGTTTTGGCTGGATCGTCCCAGCTTACACTATGCCTGCCGATGCACAGCACATCACGGTTCTGCGTGTTGTCATCAGGGAAGATTTCTCAAGAACACTCGCGGAGAGACTTGTTGCTGATATTTCGAAGGTGCTTCATGAGCTAGATACCTTGCCTTCCAAGATATCTAAGAAGATGGGAATAGAAGGGATCGCGGAAAATGTAAAGGAGAAGAAGATGGAGAAGGAGATTCTGATGGAAGTTATTGTTGGATGGAGGAAGTTTGTGAAGGAGAGGAAGAAGATGAATGGTGTGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004351 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006536 GO:0006807 GO:0008150 GO:0008152 GO:0009064 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0019752 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

365

Amino Acids

41.75

Weight (kDa)

6.07

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridoxal_deC	PF00282	36 - 380	2.7e-104	Pyridoxal-dependent decarboxylase conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65960 AT1G65960 AT1G65960 AT1G65960 AT2G02000 AT2G02010 AT2G02010 AT5G17330
fragaria_vesca	FvH4_1g30330 FvH4_1g30330
malus_domestica	MD09G1276300.v1.1 MD09G1277000.v1.1
prunus_persica	Prupe.3G015900_v2.0.a1 Prupe.3G015900_v2.0.a1 Prupe.3G015900_v2.0.a1 Prupe.3G016000_v2.0.a1
pyrus_communis	pycom09g18640 pycom09g18660
rosa_chinensis	RchiOBHm_Chr3g0490221
rosa_laevigata	RLG00000022894
rosa_multiflora	Rmu_sc0041217.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393680
rosa_rugosa	Rorug03G0243200
rosa_samantha	Rh3AG291500 Rh3BG328700 Rh3CG325500 Rh3DG324800
rosa_wichuraiana	Rw3G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	2 cut(s)	899, 992
AciI	CCGC	2 cut(s)	899, 992
AclWI	GGATC	8 cut(s)	176, 189, 237, 250, 325, 580, 818, 995
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	522
AcvI	CACGTG	1 cut(s)	337
AfaI	GTAC	2 cut(s)	128, 629
AgsI	TTSAA	3 cut(s)	22, 101, 703
AhlI	ACTAGT	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	1029, 1061
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	6 cut(s)	142, 365, 508, 604, 821, 940
AluI	AGCT	6 cut(s)	142, 365, 508, 604, 821, 940
Alw26I	GTCTC	4 cut(s)	284, 305, 715, 898
AlwI	GGATC	8 cut(s)	176, 189, 237, 250, 325, 580, 818, 995
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	194, 230, 344, 485
ApoI	RAATTY	1 cut(s)	116
AseI	ATTAAT	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	718, 754
AsuHPI	GGTGA	2 cut(s)	76, 269
AsuII	TTCGAA	2 cut(s)	264, 923
AvaII	GGWCC	2 cut(s)	718, 754
BamHI	GGATCC	2 cut(s)	181, 242
BbrPI	CACGTG	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	206, 242, 356, 497
BccI	CCATC	6 cut(s)	172, 634, 967, 1009, 1027, 1044
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	4 cut(s)	284, 305, 715, 898
BcuI	ACTAGT	1 cut(s)	448
BfaI	CTAG	3 cut(s)	293, 449, 941
BglI	GCCNNNNNGGC	1 cut(s)	14
BglII	AGATCT	1 cut(s)	780
BisI	GCNGC	4 cut(s)	195, 231, 345, 486
BlsI	GCNGC	4 cut(s)	196, 232, 346, 487
Bme18I	GGWCC	2 cut(s)	718, 754
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	718, 754
BmiI	GGNNCC	3 cut(s)	91, 183, 244
BmsI	GCATC	4 cut(s)	331, 429, 780, 829
BpiI	GAAGAC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	2 cut(s)	264, 923
BpuEI	CTTGAG	2 cut(s)	734, 871
BsaAI	YACGTR	2 cut(s)	175, 337
BsaJI	CCNNGG	2 cut(s)	567, 721
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 717, 747
Bse1I	ACTGG	2 cut(s)	319, 731
BseDI	CCNNGG	2 cut(s)	567, 721
BseGI	GGATG	2 cut(s)	346, 1055
BseMII	CTCAG	2 cut(s)	42, 777
BseNI	ACTGG	2 cut(s)	319, 731
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	206, 242, 356, 497
BseYI	CCCAGC	2 cut(s)	108, 817
Bsh1236I	CGCG	2 cut(s)	899, 992
BshFI	GGCC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	9, 87
BslFI	GGGAC	2 cut(s)	407, 800
BsmAI	GTCTC	4 cut(s)	284, 305, 715, 898
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	407, 800
BsnI	GGCC	1 cut(s)	17
Bsp119I	TTCGAA	2 cut(s)	264, 923
Bsp143I	GATC	8 cut(s)	181, 242, 330, 538, 572, 780, 810, 987
BspACI	CCGC	2 cut(s)	899, 992
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	43, 778
BspFNI	CGCG	2 cut(s)	899, 992
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	3 cut(s)	91, 183, 244
BspPI	GGATC	8 cut(s)	176, 189, 237, 250, 325, 580, 818, 995
BspQI	GCTCTTC	1 cut(s)	498
BspT104I	TTCGAA	2 cut(s)	264, 923
BsrI	ACTGG	2 cut(s)	319, 731
BssECI	CCNNGG	2 cut(s)	567, 721
BssMI	GATC	8 cut(s)	181, 242, 330, 538, 572, 780, 810, 987
BssT1I	CCWWGG	2 cut(s)	567, 721
Bst4CI	ACNGT	2 cut(s)	257, 856
Bst6I	CTCTTC	1 cut(s)	498
BstBAI	YACGTR	2 cut(s)	175, 337
BstBI	TTCGAA	2 cut(s)	264, 923
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	4 cut(s)	51, 158, 786, 966
BstF5I	GGATG	2 cut(s)	346, 1055
BstFNI	CGCG	2 cut(s)	899, 992
BstKTI	GATC	8 cut(s)	184, 245, 333, 541, 575, 783, 813, 990
BstMAI	GTCTC	4 cut(s)	284, 305, 715, 898
BstMBI	GATC	8 cut(s)	181, 242, 330, 538, 572, 780, 810, 987
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 937
BstUI	CGCG	2 cut(s)	899, 992
BstV1I	GCAGC	4 cut(s)	206, 242, 356, 497
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	3 cut(s)	181, 242, 780
BstYI	RGATCY	3 cut(s)	181, 242, 780
BsuRI	GGCC	1 cut(s)	17
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	346, 1055
Cac8I	GCNNGC	1 cut(s)	834
CciI	TCATGA	1 cut(s)	934
Cfr13I	GGNCC	2 cut(s)	718, 754
Csp6I	GTAC	2 cut(s)	127, 628
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	2 cut(s)	661, 935
CviQI	GTAC	2 cut(s)	127, 628
DdeI	CTNAG	4 cut(s)	51, 158, 786, 966
DpnI	GATC	8 cut(s)	183, 244, 332, 540, 574, 782, 812, 989
DpnII	GATC	8 cut(s)	181, 242, 330, 538, 572, 780, 810, 987
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	2 cut(s)	567, 721
Eco32I	GATATC	1 cut(s)	963
Eco47I	GGWCC	2 cut(s)	718, 754
Eco57I	CTGAAG	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	963
EcoT14I	CCWWGG	2 cut(s)	567, 721
ErhI	CCWWGG	2 cut(s)	567, 721
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	2 cut(s)	664, 938
FaqI	GGGAC	2 cut(s)	407, 800
FatI	CATG	2 cut(s)	660, 934
FbaI	TGATCA	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	195, 231, 345, 486
FokI	GGATG	2 cut(s)	353, 1062
Fsp4HI	GCNGC	4 cut(s)	195, 231, 345, 486
FspBI	CTAG	3 cut(s)	293, 449, 941
GluI	GCNGC	4 cut(s)	195, 231, 345, 486
GsaI	CCCAGC	2 cut(s)	112, 821
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	2 cut(s)	9, 87
Hin1II	CATG	2 cut(s)	664, 938
HinfI	GANTC	2 cut(s)	618, 1027
HpaII	CCGG	2 cut(s)	9, 87
HphI	GGTGA	2 cut(s)	76, 269
Hpy166II	GTNNAC	3 cut(s)	59, 154, 208
Hpy188I	TCNGA	2 cut(s)	787, 1032
Hpy188III	TCNNGA	6 cut(s)	185, 298, 380, 778, 888, 935
Hpy8I	GTNNAC	3 cut(s)	59, 154, 208
Hpy99I	CGWCG	2 cut(s)	740, 801
HpyAV	CCTTC	9 cut(s)	28, 158, 671, 751, 919, 963, 977, 1015, 1060
HpyCH4III	ACNGT	2 cut(s)	257, 856
HpyCH4IV	ACGT	6 cut(s)	174, 270, 277, 336, 426, 796
HpyCH4V	TGCA	3 cut(s)	344, 651, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 937
HpyF3I	CTNAG	4 cut(s)	51, 158, 786, 966
HpySE526I	ACGT	6 cut(s)	174, 270, 277, 336, 426, 796
Hsp92II	CATG	2 cut(s)	664, 938
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	8 cut(s)	181, 242, 330, 538, 572, 780, 810, 987
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	3 cut(s)	89, 139, 370
Lsp1109I	GCAGC	4 cut(s)	206, 242, 356, 497
LweI	GCATC	4 cut(s)	331, 429, 780, 829
MaeI	CTAG	3 cut(s)	293, 449, 941
MaeII	ACGT	6 cut(s)	174, 270, 277, 336, 426, 796
MaeIII	GTNAC	3 cut(s)	82, 167, 434
MalI	GATC	8 cut(s)	183, 244, 332, 540, 574, 782, 812, 989
MboI	GATC	8 cut(s)	181, 242, 330, 538, 572, 780, 810, 987
MboII	GAAGA	8 cut(s)	278, 515, 890, 982, 1021, 1024, 1087, 1090
MflI	RGATCY	3 cut(s)	181, 242, 780
MluCI	AATT	6 cut(s)	116, 383, 523, 559, 582, 646
MmeI	TCCRAC	2 cut(s)	299, 1027
MnlI	CCTC	9 cut(s)	46, 127, 301, 347, 474, 484, 616, 1047, 1065
MseI	TTAA	2 cut(s)	414, 522
MslI	CAYNNNNRTG	3 cut(s)	339, 425, 441
MspI	CCGG	2 cut(s)	9, 87
MvnI	CGCG	2 cut(s)	899, 992
MwoI	GCNNNNNNNGC	2 cut(s)	14, 937
NdeII	GATC	8 cut(s)	181, 242, 330, 538, 572, 780, 810, 987
NlaIII	CATG	2 cut(s)	664, 938
NlaIV	GGNNCC	3 cut(s)	91, 183, 244
NmuCI	GTSAC	2 cut(s)	82, 434
NspV	TTCGAA	2 cut(s)	264, 923
PagI	TCATGA	1 cut(s)	934
PciSI	GCTCTTC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	618, 1027
PkrI	GCNGC	4 cut(s)	196, 232, 346, 487
PmaCI	CACGTG	1 cut(s)	337
PmlI	CACGTG	1 cut(s)	337
Ppu21I	YACGTR	2 cut(s)	175, 337
PshBI	ATTAAT	1 cut(s)	522
PspCI	CACGTG	1 cut(s)	337
PspFI	CCCAGC	2 cut(s)	108, 817
PspN4I	GGNNCC	3 cut(s)	91, 183, 244
PspPI	GGNCC	2 cut(s)	718, 754
PsuI	RGATCY	3 cut(s)	181, 242, 780
RsaI	GTAC	2 cut(s)	128, 629
RsaNI	GTAC	2 cut(s)	127, 628
RseI	CAYNNNNRTG	3 cut(s)	339, 425, 441
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	414, 522
SatI	GCNGC	4 cut(s)	195, 231, 345, 486
Sau3AI	GATC	8 cut(s)	181, 242, 330, 538, 572, 780, 810, 987
Sau96I	GGNCC	2 cut(s)	718, 754
SfaNI	GCATC	4 cut(s)	331, 429, 780, 829
SfuI	TTCGAA	2 cut(s)	264, 923
SinI	GGWCC	2 cut(s)	718, 754
SmiMI	CAYNNNNRTG	3 cut(s)	339, 425, 441
SmlI	CTYRAG	2 cut(s)	749, 886
SmoI	CTYRAG	2 cut(s)	749, 886
SpeI	ACTAGT	1 cut(s)	448
Sse9I	AATT	6 cut(s)	116, 383, 523, 559, 582, 646
SsiI	CCGC	2 cut(s)	899, 992
SspMI	CTAG	3 cut(s)	293, 449, 941
StyI	CCWWGG	2 cut(s)	567, 721
TaaI	ACNGT	2 cut(s)	257, 856
TaiI	ACGT	6 cut(s)	177, 273, 280, 339, 429, 799
TaqI	TCGA	6 cut(s)	132, 264, 575, 621, 777, 923
TasI	AATT	6 cut(s)	116, 383, 523, 559, 582, 646
TfiI	GAWTC	2 cut(s)	618, 1027
Tru1I	TTAA	2 cut(s)	414, 522
Tru9I	TTAA	2 cut(s)	414, 522
TseFI	GTSAC	2 cut(s)	82, 434
TseI	GCWGC	4 cut(s)	194, 230, 344, 485
Tsp45I	GTSAC	2 cut(s)	82, 434
TspDTI	ATGAA	4 cut(s)	349, 506, 923, 1097
TspGWI	ACGGA	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	718, 754
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	3 cut(s)	293, 449, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.