Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005605

Physical Location & Seq

Genomic Coordinates Reverse (-)

13812286 .. 13817503

Gene Structure 5218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGTGCTCTCCAAAACCGCATCGCAGTCAGATGTCTCTGTCCACTCCACCTTCGCTTCGCGATACGTTCGAACTTCTCTTCCAAGGTTCAAAATGGGGGAGAACTCGATCCCGAAGGAGGCGGCTTATCAGATCATAAACGACGAGCTGATGCTGGACGGAAATCCACGGCTGAACCTGGCGTCGTTCGTGACGACGTGGATGGAGCCGGAATGCGATAAACTCATTATGTCCTCCATCAACAAGAACTACGTCGATATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGGTGCGTGAACATGATAGCTCATCTATTCAATGCACCACTCGGAGAATCAGAGGCGGCCGTTGGAGTCGGCACAGTGGGATCTTCCGAGGCCATCATGTTGGCCGGATTGGCATTCAAGAGGAGGTGGCAGAACAAGAGGAGAGCTGAGGGGAAACCGGTCGACAAGCCCAACATTGTCACTGGAGCCAATGTTCAGGTGTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAGGAGGTGAAGTTGAGGGATGATTACTACGTAATGGACCCCGAGAAAGCTGTGGAGATGGTTGATGAGAACACCATCTGCGTTGCTGCTATCCTCGGTTCCACTCTCAATGGCGAGTTCGAAGACGTCAAGCGCTTGAATGATCTCCTGGTTGAGAAAAACCAGGAAACTGGATGGGATACTCCAATCCATGTAGACGCCGCGAGTGGTGGGTTCATTGCTCCGTTTTTATACCCAGAACTCGAGTGGGATTTCCGTTTGCCGCTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTACGGACTTGTGTATGCCGGAATTGGGTGGGTCATTTGGAGGAACAAAGAGGACTTGCCTGAGGAGCTCATCTTCCATATCAACTACCTTGGAGCAGATCAACCTACCTTCACCCTCAATTTCTCTAAAGGATCCAGCCAAGTTATTGCTCAGTATTACCAACTAATTCGCTTGGGTTTTGAGGGATACAGGAACATCATGGAAAATTGTCATGAAAATATGATTGTACTAAGAGAAGGACTCGAGAAGACAGGTCGCTTCAAGATCGTCTCCAAGGACGAGGGAGTACCTCTGGTGGCTTTTTCTCTCAAAGATAACCACTGCCACGATGAGTTTGAGATCTCTGATTTGTTGCGTCGCTACGGGTGGATTGTGCCAGCATACACTATGCCGGCAGATGCTCAGCATGTCACCGTGCTGCGTGTGGTCATCAGAGAAGACTTTTCTCACACTCTTGCTGAGCGCCTGGTCAATGACATCCAGAAAGTTCTGCATGAGCTCGACCACCTTCCATCAAAGCTCAGCTCCAACAGTTCCATTGAAAGCCAATCGGTTGAGAATAATGAGAAGTCCACCGTTACCATGAAGAAGAGTGCTTTGGAGACACAGAGGGAAATCACTACCATTTGGAGGAAGTTTGTTATGGACAAGAAGAAGATAACCGGTGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004351 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006536 GO:0006807 GO:0008150 GO:0008152 GO:0009064 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0019752 GO:0042221 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

501

Amino Acids

56.98

Weight (kDa)

5.53

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridoxal_deC	PF00282	38 - 381	4.9e-106	Pyridoxal-dependent decarboxylase conserved domain
Aminotran_5	PF00266	161 - 388	8.2e-06	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65960 AT1G65960 AT1G65960 AT1G65960 AT2G02000 AT2G02010 AT2G02010 AT5G17330
fragaria_vesca	FvH4_1g30330 FvH4_1g30330
malus_domestica	MD09G1276300.v1.1 MD09G1277000.v1.1
prunus_persica	Prupe.3G015900_v2.0.a1 Prupe.3G015900_v2.0.a1 Prupe.3G015900_v2.0.a1 Prupe.3G016000_v2.0.a1
pyrus_communis	pycom09g18640 pycom09g18660
rosa_chinensis	RchiOBHm_Chr3g0490221
rosa_laevigata	RLG00000022894
rosa_multiflora	Rmu_sc0041217.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393680
rosa_rugosa	Rorug03G0243200
rosa_samantha	Rh3AG291500 Rh3BG328700 Rh3CG325500 Rh3DG324800
rosa_wichuraiana	Rw3G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	663
AccBSI	CCGCTC	1 cut(s)	822
AccI	GTMKAC	2 cut(s)	456, 729
AccII	CGCG	2 cut(s)	61, 737
AciI	CCGC	6 cut(s)	18, 122, 350, 735, 797, 822
AclWI	GGATC	4 cut(s)	103, 382, 957, 970
AcoI	YGGCCR	2 cut(s)	351, 396
AcsI	RAATTY	1 cut(s)	506
AcyI	GRCGYC	3 cut(s)	182, 660, 732
AfaI	GTAC	5 cut(s)	269, 518, 833, 1059, 1119
AfeI	AGCGCT	1 cut(s)	668
AfiI	CCNNNNNNNGG	3 cut(s)	118, 855, 1461
AgeI	ACCGGT	2 cut(s)	451, 1493
AgsI	TTSAA	7 cut(s)	91, 325, 412, 535, 673, 1093, 1373
AjiI	CACGTC	1 cut(s)	198
AjnI	CCWGG	4 cut(s)	177, 681, 696, 1296
AjuI	GAANNNNNNNTTGG	2 cut(s)	1412, 1444
AloI	GAACNNNNNNTCC	4 cut(s)	64, 96, 471, 503
AluBI	AGCT	9 cut(s)	148, 286, 314, 440, 584, 898, 1330, 1351, 1356
AluI	AGCT	9 cut(s)	148, 286, 314, 440, 584, 898, 1330, 1351, 1356
Alw21I	GWGCWC	4 cut(s)	9, 288, 900, 1332
Alw26I	GTCTC	3 cut(s)	40, 1105, 1427
AlwI	GGATC	4 cut(s)	103, 382, 957, 970
Ama87I	CYCGRG	3 cut(s)	575, 776, 1073
Aor51HI	AGCGCT	1 cut(s)	668
AoxI	GGCC	3 cut(s)	351, 384, 396
ApeKI	GCWGC	2 cut(s)	620, 1249
ApoI	RAATTY	1 cut(s)	506
AsiGI	ACCGGT	2 cut(s)	451, 1493
AspLEI	GCGC	2 cut(s)	669, 1296
AspS9I	GGNCC	1 cut(s)	571
AsuHPI	GGTGA	5 cut(s)	268, 553, 814, 934, 1234
AsuII	TTCGAA	2 cut(s)	70, 654
AvaI	CYCGRG	3 cut(s)	575, 776, 1073
AvaII	GGWCC	1 cut(s)	571
AxyI	CCTNAGG	1 cut(s)	891
BaeGI	GKGCMC	1 cut(s)	828
BamHI	GGATCC	1 cut(s)	962
BanII	GRGCYC	3 cut(s)	288, 900, 1332
BbsI	GAAGAC	3 cut(s)	663, 1085, 1275
Bbv12I	GWGCWC	4 cut(s)	9, 288, 900, 1332
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	607, 1236
BccI	CCATC	7 cut(s)	196, 245, 395, 586, 617, 702, 1351
BceAI	ACGGC	2 cut(s)	185, 338
BciT130I	CCWGG	4 cut(s)	179, 683, 698, 1298
BciVI	GTATCC	2 cut(s)	706, 1010
BcoDI	GTCTC	3 cut(s)	40, 1105, 1427
BfoI	RGCGCY	2 cut(s)	670, 1297
BfuI	GTATCC	2 cut(s)	706, 1010
BglI	GCCNNNNNGGC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	1170
BisI	GCNGC	6 cut(s)	123, 351, 621, 735, 797, 1250
BlpI	GCTNAGC	3 cut(s)	1233, 1290, 1352
BlsI	GCNGC	6 cut(s)	124, 352, 622, 736, 798, 1251
Bme1390I	CCNGG	4 cut(s)	179, 683, 698, 1298
Bme18I	GGWCC	1 cut(s)	571
BmeT110I	CYCGRG	3 cut(s)	575, 776, 1073
BmgBI	CACGTC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	571
BmiI	GGNNCC	5 cut(s)	207, 481, 573, 634, 964
BmrFI	CCNGG	4 cut(s)	179, 683, 698, 1298
BmsI	GCATC	4 cut(s)	29, 141, 819, 1219
BpiI	GAAGAC	3 cut(s)	663, 1085, 1275
BplI	GAGNNNNNCTC	2 cut(s)	1056, 1088
BpmI	CTGGAG	2 cut(s)	272, 498
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	3 cut(s)	1233, 1290, 1352
Bpu14I	TTCGAA	2 cut(s)	70, 654
BsaAI	YACGTR	1 cut(s)	565
BsaHI	GRCGYC	3 cut(s)	182, 660, 732
BsaJI	CCNNGG	6 cut(s)	83, 167, 381, 628, 919, 1104
BsaWI	WCCGGW	2 cut(s)	451, 1493
BsaXI	ACNNNNNCTCC	4 cut(s)	471, 501, 530, 560
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 855, 1461
Bse118I	RCCGGY	3 cut(s)	451, 1222, 1493
Bse1I	ACTGG	2 cut(s)	481, 709
Bse21I	CCTNAGG	1 cut(s)	891
Bse3DI	GCAATG	1 cut(s)	750
BseBI	CCWGG	4 cut(s)	179, 683, 698, 1298
BseDI	CCNNGG	6 cut(s)	83, 167, 381, 628, 919, 1104
BseGI	GGATG	5 cut(s)	207, 268, 559, 713, 1308
BseLI	CCNNNNNNNGG	3 cut(s)	118, 855, 1461
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	7 cut(s)	273, 432, 882, 995, 1247, 1281, 1366
BseNI	ACTGG	2 cut(s)	481, 709
BseRI	GAGGAG	3 cut(s)	430, 448, 908
BseSI	GKGCMC	1 cut(s)	828
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	607, 1236
BseYI	CCCAGC	1 cut(s)	498
Bsh1236I	CGCG	2 cut(s)	61, 737
Bsh1285I	CGRYCG	2 cut(s)	354, 456
BshFI	GGCC	3 cut(s)	353, 386, 398
BshTI	ACCGGT	2 cut(s)	451, 1493
BsiEI	CGRYCG	2 cut(s)	354, 456
BsiHKAI	GWGCWC	4 cut(s)	9, 288, 900, 1332
BsiHKCI	CYCGRG	3 cut(s)	575, 776, 1073
BsiSI	CCGG	6 cut(s)	209, 399, 452, 849, 1223, 1494
BslI	CCNNNNNNNGG	3 cut(s)	118, 855, 1461
BsmAI	GTCTC	3 cut(s)	40, 1105, 1427
BsmBI	CGTCTC	1 cut(s)	1105
BsmI	GAATGC	2 cut(s)	218, 407
BsnI	GGCC	3 cut(s)	353, 386, 398
BsoBI	CYCGRG	3 cut(s)	575, 776, 1073
Bsp119I	TTCGAA	2 cut(s)	70, 654
Bsp1286I	GDGCHC	5 cut(s)	9, 288, 828, 900, 1332
Bsp143I	GATC	8 cut(s)	108, 132, 374, 676, 928, 962, 1095, 1170
Bsp1720I	GCTNAGC	3 cut(s)	1233, 1290, 1352
Bsp68I	TCGCGA	1 cut(s)	61
BspACI	CCGC	6 cut(s)	18, 122, 350, 735, 797, 822
BspANI	GGCC	3 cut(s)	353, 386, 398
BspCNI	CTCAG	7 cut(s)	274, 433, 883, 994, 1246, 1282, 1365
BspFNI	CGCG	2 cut(s)	61, 737
BspHI	TCATGA	1 cut(s)	1042
BspLI	GGNNCC	5 cut(s)	207, 481, 573, 634, 964
BspPI	GGATC	4 cut(s)	103, 382, 957, 970
BspQI	GCTCTTC	1 cut(s)	800
BspT104I	TTCGAA	2 cut(s)	70, 654
BsrBI	CCGCTC	1 cut(s)	822
BsrDI	GCAATG	1 cut(s)	750
BsrFI	RCCGGY	3 cut(s)	451, 1222, 1493
BsrI	ACTGG	2 cut(s)	481, 709
BssAI	RCCGGY	3 cut(s)	451, 1222, 1493
BssECI	CCNNGG	6 cut(s)	83, 167, 381, 628, 919, 1104
BssMI	GATC	8 cut(s)	108, 132, 374, 676, 928, 962, 1095, 1170
BssNI	GRCGYC	3 cut(s)	182, 660, 732
BssT1I	CCWWGG	3 cut(s)	83, 919, 1104
Bst2UI	CCWGG	4 cut(s)	179, 683, 698, 1298
Bst4CI	ACNGT	4 cut(s)	370, 1246, 1364, 1408
Bst6I	CTCTTC	3 cut(s)	84, 800, 1415
BstACI	GRCGYC	3 cut(s)	182, 660, 732
BstBAI	YACGTR	1 cut(s)	565
BstBI	TTCGAA	2 cut(s)	70, 654
BstC8I	GCNNGC	3 cut(s)	824, 1209, 1224
BstDEI	CTNAG	8 cut(s)	282, 441, 891, 981, 1061, 1233, 1290, 1352
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	5 cut(s)	207, 268, 559, 713, 1308
BstFNI	CGCG	2 cut(s)	61, 737
BstH2I	RGCGCY	2 cut(s)	670, 1297
BstHHI	GCGC	2 cut(s)	669, 1296
BstKTI	GATC	8 cut(s)	111, 135, 377, 679, 931, 965, 1098, 1173
BstMAI	GTCTC	3 cut(s)	40, 1105, 1427
BstMBI	GATC	8 cut(s)	108, 132, 374, 676, 928, 962, 1095, 1170
BstMCI	CGRYCG	2 cut(s)	354, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 895
BstNI	CCWGG	4 cut(s)	179, 683, 698, 1298
BstNSI	RCATGY	1 cut(s)	1241
BstSCI	CCNGG	4 cut(s)	177, 681, 696, 1296
BstSLI	GKGCMC	1 cut(s)	828
BstSNI	TACGTA	1 cut(s)	565
BstUI	CGCG	2 cut(s)	61, 737
BstV1I	GCAGC	2 cut(s)	607, 1236
BstV2I	GAAGAC	3 cut(s)	663, 1085, 1275
BstX2I	RGATCY	3 cut(s)	374, 962, 1170
BstXI	CCANNNNNNTGG	2 cut(s)	394, 704
BstYI	RGATCY	3 cut(s)	374, 962, 1170
BstZI	CGGCCG	1 cut(s)	351
Bsu36I	CCTNAGG	1 cut(s)	891
BsuI	GTATCC	2 cut(s)	706, 1010
BsuRI	GGCC	3 cut(s)	353, 386, 398
BtgI	CCRYGG	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	198
BtsCI	GGATG	5 cut(s)	207, 268, 559, 713, 1308
BtsI	GCAGTG	1 cut(s)	1150
BtsIMutI	CAGTG	4 cut(s)	279, 375, 474, 1150
BtuMI	TCGCGA	1 cut(s)	61
Cac8I	GCNNGC	3 cut(s)	824, 1209, 1224
CciI	TCATGA	1 cut(s)	1042
CfoI	GCGC	2 cut(s)	669, 1296
Cfr10I	RCCGGY	3 cut(s)	451, 1222, 1493
Cfr13I	GGNCC	1 cut(s)	571
CseI	GACGC	3 cut(s)	171, 740, 1175
Csp6I	GTAC	5 cut(s)	268, 517, 832, 1058, 1118
CspAI	ACCGGT	2 cut(s)	451, 1493
CviAII	CATG	8 cut(s)	307, 391, 725, 1030, 1043, 1238, 1325, 1414
CviQI	GTAC	5 cut(s)	268, 517, 832, 1058, 1118
DdeI	CTNAG	8 cut(s)	282, 441, 891, 981, 1061, 1233, 1290, 1352
DpnI	GATC	8 cut(s)	110, 134, 376, 678, 930, 964, 1097, 1172
DpnII	GATC	8 cut(s)	108, 132, 374, 676, 928, 962, 1095, 1170
EaeI	YGGCCR	2 cut(s)	351, 396
EagI	CGGCCG	1 cut(s)	351
Eam1104I	CTCTTC	3 cut(s)	84, 800, 1415
EarI	CTCTTC	3 cut(s)	84, 800, 1415
Ecl136II	GAGCTC	3 cut(s)	286, 898, 1330
EclXI	CGGCCG	1 cut(s)	351
Eco105I	TACGTA	1 cut(s)	565
Eco130I	CCWWGG	3 cut(s)	83, 919, 1104
Eco24I	GRGCYC	3 cut(s)	288, 900, 1332
Eco47I	GGWCC	1 cut(s)	571
Eco47III	AGCGCT	1 cut(s)	668
Eco52I	CGGCCG	1 cut(s)	351
Eco53kI	GAGCTC	3 cut(s)	286, 898, 1330
Eco81I	CCTNAGG	1 cut(s)	891
Eco88I	CYCGRG	3 cut(s)	575, 776, 1073
EcoICRI	GAGCTC	3 cut(s)	286, 898, 1330
EcoRII	CCWGG	4 cut(s)	177, 681, 696, 1296
EcoT14I	CCWWGG	3 cut(s)	83, 919, 1104
EcoT38I	GRGCYC	3 cut(s)	288, 900, 1332
ErhI	CCWWGG	3 cut(s)	83, 919, 1104
Esp3I	CGTCTC	1 cut(s)	1105
FaeI	CATG	8 cut(s)	310, 394, 728, 1033, 1046, 1241, 1328, 1417
FatI	CATG	8 cut(s)	306, 390, 724, 1029, 1042, 1237, 1324, 1413
FauI	CCCGC	1 cut(s)	815
FblI	GTMKAC	2 cut(s)	456, 729
Fnu4HI	GCNGC	6 cut(s)	123, 351, 621, 735, 797, 1250
FokI	GGATG	5 cut(s)	214, 275, 566, 720, 1295
FriOI	GRGCYC	3 cut(s)	288, 900, 1332
Fsp4HI	GCNGC	6 cut(s)	123, 351, 621, 735, 797, 1250
GlaI	GCGC	2 cut(s)	668, 1295
GluI	GCNGC	6 cut(s)	123, 351, 621, 735, 797, 1250
GsaI	CCCAGC	1 cut(s)	502
GsuI	CTGGAG	2 cut(s)	272, 498
HaeII	RGCGCY	2 cut(s)	670, 1297
HaeIII	GGCC	3 cut(s)	353, 386, 398
HapII	CCGG	6 cut(s)	209, 399, 452, 849, 1223, 1494
HgaI	GACGC	3 cut(s)	171, 740, 1175
HhaI	GCGC	2 cut(s)	669, 1296
Hin1I	GRCGYC	3 cut(s)	182, 660, 732
Hin1II	CATG	8 cut(s)	310, 394, 728, 1033, 1046, 1241, 1328, 1417
Hin6I	GCGC	2 cut(s)	667, 1294
HinP1I	GCGC	2 cut(s)	667, 1294
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	4 cut(s)	292, 341, 360, 1071
HpaII	CCGG	6 cut(s)	209, 399, 452, 849, 1223, 1494
HphI	GGTGA	5 cut(s)	268, 553, 814, 934, 1234
Hpy166II	GTNNAC	5 cut(s)	43, 304, 457, 730, 1404
Hpy188I	TCNGA	7 cut(s)	31, 132, 338, 346, 382, 1177, 1265
Hpy188III	TCNNGA	9 cut(s)	60, 112, 190, 289, 412, 1043, 1075, 1093, 1312
Hpy8I	GTNNAC	5 cut(s)	43, 304, 457, 730, 1404
Hpy99I	CGWCG	5 cut(s)	146, 187, 199, 257, 1191
HpyAV	CCTTC	6 cut(s)	61, 109, 529, 949, 1061, 1349
HpyCH4III	ACNGT	4 cut(s)	370, 1246, 1364, 1408
HpyCH4IV	ACGT	6 cut(s)	66, 197, 252, 564, 660, 816
HpyCH4V	TGCA	3 cut(s)	329, 512, 1324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 895
HpyF3I	CTNAG	8 cut(s)	282, 441, 891, 981, 1061, 1233, 1290, 1352
HpySE526I	ACGT	6 cut(s)	66, 197, 252, 564, 660, 816
Hsp92I	GRCGYC	3 cut(s)	182, 660, 732
Hsp92II	CATG	8 cut(s)	310, 394, 728, 1033, 1046, 1241, 1328, 1417
HspAI	GCGC	2 cut(s)	667, 1294
KroI	GCCGGC	1 cut(s)	1222
KroNI	GCCGGC	1 cut(s)	1224
Kzo9I	GATC	8 cut(s)	108, 132, 374, 676, 928, 962, 1095, 1170
LguI	GCTCTTC	1 cut(s)	800
LmnI	GCTCC	7 cut(s)	205, 291, 479, 760, 895, 923, 1361
Lsp1109I	GCAGC	2 cut(s)	607, 1236
LweI	GCATC	4 cut(s)	29, 141, 819, 1219
MaeII	ACGT	6 cut(s)	66, 197, 252, 564, 660, 816
MaeIII	GTNAC	5 cut(s)	190, 274, 472, 1240, 1408
MalI	GATC	8 cut(s)	110, 134, 376, 678, 930, 964, 1097, 1172
MbiI	CCGCTC	1 cut(s)	822
MboI	GATC	8 cut(s)	108, 132, 374, 676, 928, 962, 1095, 1170
MflI	RGATCY	3 cut(s)	374, 962, 1170
MhlI	GDGCHC	5 cut(s)	9, 288, 828, 900, 1332
MluCI	AATT	5 cut(s)	506, 852, 949, 996, 1036
MlyI	GAGTC	2 cut(s)	369, 1065
MmeI	TCCRAC	2 cut(s)	337, 1383
MroNI	GCCGGC	1 cut(s)	1222
MslI	CAYNNNNRTG	1 cut(s)	815
MspA1I	CMGCKG	1 cut(s)	799
MspI	CCGG	6 cut(s)	209, 399, 452, 849, 1223, 1494
MspR9I	CCNGG	4 cut(s)	179, 683, 698, 1298
Mva1269I	GAATGC	2 cut(s)	218, 407
MvaI	CCWGG	4 cut(s)	179, 683, 698, 1298
MvnI	CGCG	2 cut(s)	61, 737
MwoI	GCNNNNNNNGC	2 cut(s)	404, 895
NaeI	GCCGGC	1 cut(s)	1224
NdeII	GATC	8 cut(s)	108, 132, 374, 676, 928, 962, 1095, 1170
NgoMIV	GCCGGC	1 cut(s)	1222
NlaIII	CATG	8 cut(s)	310, 394, 728, 1033, 1046, 1241, 1328, 1417
NlaIV	GGNNCC	5 cut(s)	207, 481, 573, 634, 964
NmuCI	GTSAC	4 cut(s)	190, 274, 472, 1240
NruI	TCGCGA	1 cut(s)	61
NspI	RCATGY	1 cut(s)	1241
NspV	TTCGAA	2 cut(s)	70, 654
PaeR7I	CTCGAG	2 cut(s)	776, 1073
PagI	TCATGA	1 cut(s)	1042
PciSI	GCTCTTC	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	2 cut(s)	218, 407
PdiI	GCCGGC	1 cut(s)	1224
PfeI	GAWTC	2 cut(s)	292, 341
PinAI	ACCGGT	2 cut(s)	451, 1493
PkrI	GCNGC	6 cut(s)	124, 352, 622, 736, 798, 1251
PleI	GAGTC	2 cut(s)	368, 1065
PpsI	GAGTC	2 cut(s)	368, 1065
Ppu21I	YACGTR	1 cut(s)	565
Psp124BI	GAGCTC	3 cut(s)	288, 900, 1332
Psp6I	CCWGG	4 cut(s)	177, 681, 696, 1296
PspFI	CCCAGC	1 cut(s)	498
PspGI	CCWGG	4 cut(s)	177, 681, 696, 1296
PspN4I	GGNNCC	5 cut(s)	207, 481, 573, 634, 964
PspPI	GGNCC	1 cut(s)	571
PspXI	VCTCGAGB	1 cut(s)	776
PsuI	RGATCY	3 cut(s)	374, 962, 1170
RruI	TCGCGA	1 cut(s)	61
RsaI	GTAC	5 cut(s)	269, 518, 833, 1059, 1119
RsaNI	GTAC	5 cut(s)	268, 517, 832, 1058, 1118
RseI	CAYNNNNRTG	1 cut(s)	815
SacI	GAGCTC	3 cut(s)	288, 900, 1332
SalI	GTCGAC	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	800
SatI	GCNGC	6 cut(s)	123, 351, 621, 735, 797, 1250
Sau3AI	GATC	8 cut(s)	108, 132, 374, 676, 928, 962, 1095, 1170
Sau96I	GGNCC	1 cut(s)	571
SchI	GAGTC	2 cut(s)	369, 1065
ScrFI	CCNGG	4 cut(s)	179, 683, 698, 1298
SduI	GDGCHC	5 cut(s)	9, 288, 828, 900, 1332
SfaNI	GCATC	4 cut(s)	29, 141, 819, 1219
Sfr274I	CTCGAG	2 cut(s)	776, 1073
SfuI	TTCGAA	2 cut(s)	70, 654
SinI	GGWCC	1 cut(s)	571
SlaI	CTCGAG	2 cut(s)	776, 1073
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	2 cut(s)	776, 1073
SmoI	CTYRAG	2 cut(s)	776, 1073
SnaBI	TACGTA	1 cut(s)	565
Sse9I	AATT	5 cut(s)	506, 852, 949, 996, 1036
SsiI	CCGC	6 cut(s)	18, 122, 350, 735, 797, 822
SstI	GAGCTC	3 cut(s)	288, 900, 1332
StyD4I	CCNGG	4 cut(s)	177, 681, 696, 1296
StyI	CCWWGG	3 cut(s)	83, 919, 1104
TaaI	ACNGT	4 cut(s)	370, 1246, 1364, 1408
TaiI	ACGT	6 cut(s)	69, 200, 255, 567, 663, 819
TaqI	TCGA	8 cut(s)	70, 107, 255, 456, 654, 777, 1074, 1332
TasI	AATT	5 cut(s)	506, 852, 949, 996, 1036
TatI	WGTACW	1 cut(s)	1057
TauI	GCSGC	4 cut(s)	125, 353, 737, 799
TfiI	GAWTC	2 cut(s)	292, 341
TscAI	CASTG	4 cut(s)	286, 375, 481, 1157
TseFI	GTSAC	4 cut(s)	190, 274, 472, 1240
TseI	GCWGC	2 cut(s)	620, 1249
Tsp45I	GTSAC	4 cut(s)	190, 274, 472, 1240
TspDTI	ATGAA	3 cut(s)	739, 1059, 1430
TspGWI	ACGGA	4 cut(s)	174, 747, 779, 849
TspRI	CASTG	4 cut(s)	286, 375, 481, 1157
VpaK11BI	GGWCC	1 cut(s)	571
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	1 cut(s)	1241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XhoI	CTCGAG	2 cut(s)	776, 1073
XmiI	GTMKAC	2 cut(s)	456, 729
ZraI	GACGTC	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.