Rorug03G0243200

Belongs to the group II decarboxylase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005605
Physical Location & Seq
Reverse (-)
22693236 .. 22694227
992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0243200.1

Sequence Viewer

Length: 645 bp
ATGGTTGGACCCTCCAATCTAAAAACCCTCCCTCCTCTCCAGGTTTTCTCCACCTTACCACCACCACCACCATCGTCTTCTTCCTCAAGCTCCATGACGAAGCTCAAAACCTTAATCCACACCCTCATCTTCTCCCACGTGTGCCGCGCAATTCGGTATCTCAACAAAGCCAAATCCAAAACCATATCCTTTTTCATTCAAATCATTAAGGAGAGCCAGCCCATGCAACTGATTTACCCTTCAAAGAAGAGCAGGAGCAAGAACAAGAACAAGATCTTCTTCGGCTCGTTCCGGCTGCACTACAACTGGTGCTCCTCCACGCACGTTCTTCCCGTGCCAGCCCGCGTCTACGAGGGTCTCACATCAACAAGCCATTTGTACTACGATTCGAATTGGAATTCCGTAATTTCAACCGAGGAGCAATGCGGCGGTCATGATCAGGACAGCGGCGAGTCGCAGCTTTCGGGGTACCTCCAATGGCTGGAGGAAAACAAGGTGCATGAAAAATCCATGGCTGATGAGACAGATGAGAATGAGATTGATAAGCTGGCCGATTTGTTCATTGCAAGCTGTCATGAGAAGTTCATGTTGGAGAAGCAGGAGTCCTACAGGAGATTCCAGGAAATGCTTGCCAGAAGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940
Pfam Domains
Protein Families
Pyridoxal_deC

Protein Analysis

214

Amino Acids

24.49

Weight (kDa)

8.59

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 177 - 212 6.5e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 468
AccB7I CCANNNNNTGG 1 cut(s) 481
AccI GTMKAC 1 cut(s) 348
AccII CGCG 2 cut(s) 147, 345
AciI CCGC 5 cut(s) 145, 343, 426, 429, 447
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 1 cut(s) 397
AcvI CACGTG 1 cut(s) 139
AfaI GTAC 2 cut(s) 380, 470
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 3 cut(s) 200, 243, 411
AjnI CCWGG 2 cut(s) 39, 618
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 5 cut(s) 90, 103, 460, 547, 570
AluI AGCT 5 cut(s) 90, 103, 460, 547, 570
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 2 cut(s) 362, 515
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 2 cut(s) 295, 457
ApoI RAATTY 1 cut(s) 397
Asp718I GGTACC 1 cut(s) 468
AspLEI GCGC 2 cut(s) 149, 641
AspS9I GGNCC 1 cut(s) 8
AsuII TTCGAA 1 cut(s) 389
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 468
BbrPI CACGTG 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 2 cut(s) 282, 469
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 41, 620
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 362, 515
BfmI CTRYAG 1 cut(s) 607
BglII AGATCT 1 cut(s) 273
BisI GCNGC 5 cut(s) 145, 296, 427, 448, 458
BlsI GCNGC 5 cut(s) 146, 297, 428, 449, 459
Bme1390I CCNGG 2 cut(s) 41, 620
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 10, 470
BmrFI CCNGG 2 cut(s) 41, 620
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 2 cut(s) 23, 503
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 414, 510
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 428, 561
BseBI CCWGG 2 cut(s) 41, 620
BseDI CCNNGG 2 cut(s) 414, 510
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 2 cut(s) 428, 561
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 3 cut(s) 24, 304, 431
BseXI GCAGC 2 cut(s) 282, 469
BsgI GTGCAG 1 cut(s) 281
Bsh1236I CGCG 2 cut(s) 147, 345
BshFI GGCC 1 cut(s) 551
BshNI GGYRCC 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 362, 515
BsnI GGCC 1 cut(s) 551
Bso31I GGTCTC 1 cut(s) 362
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 273, 436
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 5 cut(s) 145, 343, 426, 429, 447
BspANI GGCC 1 cut(s) 551
BspFNI CGCG 2 cut(s) 147, 345
BspHI TCATGA 2 cut(s) 433, 574
BspLI GGNNCC 2 cut(s) 10, 470
BspQI GCTCTTC 1 cut(s) 242
BspT104I TTCGAA 1 cut(s) 389
BspT107I GGYRCC 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 428, 561
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 414, 510
BssMI GATC 2 cut(s) 273, 436
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 2 cut(s) 41, 620
Bst6I CTCTTC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 6 cut(s) 218, 339, 343, 549, 568, 630
BstDSI CCRYGG 1 cut(s) 510
BstFNI CGCG 2 cut(s) 147, 345
BstHHI GCGC 2 cut(s) 149, 641
BstKTI GATC 2 cut(s) 276, 439
BstMAI GTCTC 2 cut(s) 362, 515
BstMBI GATC 2 cut(s) 273, 436
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstNI CCWGG 2 cut(s) 41, 620
BstSCI CCNGG 2 cut(s) 39, 618
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 2 cut(s) 147, 345
BstV1I GCAGC 2 cut(s) 282, 469
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 1 cut(s) 551
BtgI CCRYGG 1 cut(s) 510
Cac8I GCNNGC 6 cut(s) 218, 339, 343, 549, 568, 630
CciI TCATGA 2 cut(s) 433, 574
CfoI GCGC 2 cut(s) 149, 641
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 379, 469
CviAII CATG 8 cut(s) 94, 223, 434, 500, 511, 575, 586, 642
CviQI GTAC 2 cut(s) 379, 469
DpnI GATC 2 cut(s) 275, 438
DpnII GATC 2 cut(s) 273, 436
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 8
Eco72I CACGTG 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 39, 618
EcoT14I CCWWGG 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 8 cut(s) 97, 226, 437, 503, 514, 578, 589, 645
FaiI YATR 9 cut(s) 95, 185, 224, 435, 501, 512, 576, 587, 643
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 8 cut(s) 93, 222, 433, 499, 510, 574, 585, 641
FauI CCCGC 1 cut(s) 350
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 5 cut(s) 145, 296, 427, 448, 458
Fsp4HI GCNGC 5 cut(s) 145, 296, 427, 448, 458
GlaI GCGC 2 cut(s) 148, 640
GluI GCNGC 5 cut(s) 145, 296, 427, 448, 458
GsuI CTGGAG 2 cut(s) 23, 503
HaeIII GGCC 1 cut(s) 551
HapII CCGG 1 cut(s) 292
HgaI GACGC 1 cut(s) 334
HhaI GCGC 2 cut(s) 149, 641
Hin1II CATG 8 cut(s) 97, 226, 437, 503, 514, 578, 589, 645
Hin6I GCGC 2 cut(s) 147, 639
HinP1I GCGC 2 cut(s) 147, 639
HinfI GANTC 4 cut(s) 386, 452, 602, 615
HpaII CCGG 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 349
Hpy188III TCNNGA 3 cut(s) 434, 440, 575
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 2 cut(s) 138, 324
HpyCH4V TGCA 4 cut(s) 226, 298, 499, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpySE526I ACGT 2 cut(s) 138, 324
Hsp92II CATG 8 cut(s) 97, 226, 437, 503, 514, 578, 589, 645
HspAI GCGC 2 cut(s) 147, 639
KpnI GGTACC 1 cut(s) 472
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 2 cut(s) 273, 436
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 4 cut(s) 95, 255, 317, 418
Lsp1109I GCAGC 2 cut(s) 282, 469
MaeII ACGT 2 cut(s) 138, 324
MalI GATC 2 cut(s) 275, 438
MboI GATC 2 cut(s) 273, 436
MboII GAAGA 7 cut(s) 69, 72, 121, 259, 268, 271, 320
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 4 cut(s) 150, 391, 397, 405
MlyI GAGTC 2 cut(s) 461, 611
MmeI TCCRAC 1 cut(s) 570
MseI TTAA 2 cut(s) 113, 207
MspA1I CMGCKG 1 cut(s) 447
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 2 cut(s) 41, 620
MvaI CCWGG 2 cut(s) 41, 620
MvnI CGCG 2 cut(s) 147, 345
MwoI GCNNNNNNNGC 1 cut(s) 638
NcoI CCATGG 1 cut(s) 510
NdeII GATC 2 cut(s) 273, 436
NlaIII CATG 8 cut(s) 97, 226, 437, 503, 514, 578, 589, 645
NlaIV GGNNCC 2 cut(s) 10, 470
NspV TTCGAA 1 cut(s) 389
PagI TCATGA 2 cut(s) 433, 574
PciSI GCTCTTC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PfeI GAWTC 2 cut(s) 386, 615
PflMI CCANNNNNTGG 1 cut(s) 481
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 5 cut(s) 146, 297, 428, 449, 459
PleI GAGTC 2 cut(s) 460, 610
PmaCI CACGTG 1 cut(s) 139
PmlI CACGTG 1 cut(s) 139
PpsI GAGTC 2 cut(s) 460, 610
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 39, 618
PspCI CACGTG 1 cut(s) 139
PspGI CCWGG 2 cut(s) 39, 618
PspN4I GGNNCC 2 cut(s) 10, 470
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 2 cut(s) 380, 470
RsaNI GTAC 2 cut(s) 379, 469
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 113, 207
SatI GCNGC 5 cut(s) 145, 296, 427, 448, 458
Sau3AI GATC 2 cut(s) 273, 436
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 2 cut(s) 461, 611
ScrFI CCNGG 2 cut(s) 41, 620
SduI GDGCHC 1 cut(s) 314
SfcI CTRYAG 1 cut(s) 607
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 4 cut(s) 150, 391, 397, 405
SsiI CCGC 5 cut(s) 145, 343, 426, 429, 447
StyD4I CCNGG 2 cut(s) 39, 618
StyI CCWWGG 1 cut(s) 510
TaiI ACGT 2 cut(s) 141, 327
TaqI TCGA 1 cut(s) 389
TasI AATT 4 cut(s) 150, 391, 397, 405
TatI WGTACW 1 cut(s) 378
TauI GCSGC 3 cut(s) 147, 429, 450
TfiI GAWTC 2 cut(s) 386, 615
Tru1I TTAA 2 cut(s) 113, 207
Tru9I TTAA 2 cut(s) 113, 207
TseI GCWGC 2 cut(s) 295, 457
TspDTI ATGAA 4 cut(s) 184, 516, 550, 574
TspGWI ACGGA 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.