MD09G1277000.v1.1

Belongs to the group II decarboxylase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
35381876 .. 35388878
7003 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1277000.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGGCTCTCTCAAGGGCTGCATCGGAGTCGGACGTCTCCGTCCACTCAACGTTCGCTTCTCGATACGTCCGAACTACTCTTCCTAGGTTCAAAATGGCGGAAAATTCGATCCCGAAGGAGGCAGCGTACCAGATCATAAACGATGAGCTGATGTTGGATGGGAACCCTAGGTTGAATCTGGCATCGTTCGTGACGACATGGATGGAGCCTGAGTGTGATAAACTCATGATGGCCTCCATCAACAAGAATTACGTCGACATGGATGAGTACCCTATCACCACTGAGCTCCAGAATCGGTGCGTAAACATAATAGCTCATCTGTTCAATGCACCATTGGGAGATTCAGAGGCAGCCGTTGGAGTGGGAACGGTGGGCTCTTCTGAGGCCATCATGTTGGCTGGCTTGGCATTCAAGAGGAAGTGGCAAAACAAGAGGAGAGCTGAGGGCAAACCCGTTGACAAACCCAACATTGTCACCGGAGCCAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTGGAGTTGAAGGAGGTGAAGTTGAGGGAGGGCTACTATGTAATGGACCCTGAGAAAGCAGTGGAAATGGTTGATGAGAACACAATCTGCGTTGCTGCTATCCTCGGCTCCACCCTCAACGGTGAGTTCGAAGATGTCAAGCTCTTGAATGATCTCTTGATAGAGAAGAACAAGGAAACTGGATGGGATACTTCAATCCATGTAGACGCAGCAAGTGGCGGGTTTATTGCTCCATTTCTTTACCCAGAACTGGAATGGGATTTCCGTTTGCCCCTTGTGAAGAGCATCAACGTTAGCGGACACAAGTACGGACTCGTGTACGCAGGGATTGGATGGGTCATCTGGAGGAACAAAGAAGATTTGCCGGACGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAACCTACTTTCACCCTCAACTTCTCAAAAGGCTCCAGCCAAATTATTGCTCAATATTATCAACTGATTCGCTTGGGTTTTGAGGGATACAGGAACGTCATGGAAAATTGTCGTGAAAACATGGTAGTACTAAAAGAAGGATTGGAGAAGACAGGTCGCTTCAACATAGTCTCCAAAGACGAAGGTGTACCCTTGGTGGCCTTCTCTTTGAAGGATAACCATCGCCATGACGAGTTTGAAATCTCCGACTTACTTCGCCGCTTCGGATGGATCGTTCCGGCATACACCATGCCCCCAGACGCGCAACACATCACCGTGCTACGTGTTGTCATTAGGGAAGACTTCTCTCGCACTTTGGCCGAGCGGCTTGTGAATGACATCAAAAAAGTGTTGAGTGAACTTGACACGCTTCCATCTAAACTTAGCTCCAATGTGAAGGCTGCTGATGAAAAAGGTGAGAAACCTGGGATGACACTTGAGAGTAAGAAGAGTGATTTGGAGAAAACAAGGGAGATCACGACAGTTTGGAGGAAGTTTGTTATGGCCAGGAAGCAGAAGATGAATGTTGTTTGTTAG

Protein Analysis

502

Amino Acids

56.85

Weight (kDa)

5.71

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 38 - 381 4.6e-105 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AatII GACGTC 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 1294
AccI GTMKAC 2 cut(s) 255, 729
AccII CGCG 1 cut(s) 1232
AciI CCGC 5 cut(s) 98, 744, 822, 1189, 1294
AclI AACGTT 2 cut(s) 50, 816
AclWI GGATC 2 cut(s) 103, 1208
AcoI YGGCCR 2 cut(s) 1287, 1473
AcsI RAATTY 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 7 cut(s) 128, 269, 518, 833, 845, 1059, 1119
AfiI CCNNNNNNNGG 2 cut(s) 118, 775
AflIII ACRYGT 1 cut(s) 1252
AjnI CCWGG 3 cut(s) 489, 1393, 1475
AjuI GAANNNNNNNTTGG 2 cut(s) 1409, 1441
AloI GAACNNNNNNTCC 6 cut(s) 64, 96, 888, 920, 1188, 1220
AluBI AGCT 7 cut(s) 148, 286, 314, 440, 667, 926, 1356
AluI AGCT 7 cut(s) 148, 286, 314, 440, 667, 926, 1356
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 40, 1105
AlwI GGATC 2 cut(s) 103, 1208
AoxI GGCC 5 cut(s) 231, 384, 1128, 1287, 1473
ApeKI GCWGC 6 cut(s) 17, 122, 350, 620, 734, 1370
ApoI RAATTY 1 cut(s) 103
AspA2I CCTAGG 2 cut(s) 83, 167
AspLEI GCGC 1 cut(s) 1234
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 7 cut(s) 268, 466, 553, 659, 934, 1234, 1397
AsuII TTCGAA 1 cut(s) 654
AvaII GGWCC 1 cut(s) 571
AvrII CCTAGG 2 cut(s) 83, 167
BalI TGGCCA 1 cut(s) 1475
BanII GRGCYC 2 cut(s) 288, 377
BauI CACGAG 1 cut(s) 839
BbsI GAAGAC 2 cut(s) 1085, 1275
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 6 cut(s) 4, 134, 362, 607, 746, 1357
BceAI ACGGC 1 cut(s) 338
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BciT130I CCWGG 3 cut(s) 491, 1395, 1477
BciVI GTATCC 2 cut(s) 706, 1010
BcoDI GTCTC 2 cut(s) 40, 1105
BfaI CTAG 2 cut(s) 84, 168
BfuI GTATCC 2 cut(s) 706, 1010
BisI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
BlnI CCTAGG 2 cut(s) 83, 167
BlsI GCNGC 8 cut(s) 19, 124, 352, 622, 736, 1190, 1296, 1372
BmcAI AGTACT 1 cut(s) 1059
Bme1390I CCNGG 3 cut(s) 491, 1395, 1477
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 6 cut(s) 164, 207, 481, 573, 634, 964
BmrFI CCNGG 3 cut(s) 491, 1395, 1477
BmsI GCATC 3 cut(s) 29, 191, 819
BpiI GAAGAC 2 cut(s) 1085, 1275
BpmI CTGGAG 3 cut(s) 272, 889, 949
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 1427
BsaAI YACGTR 1 cut(s) 1253
BsaBI GATNNNNATC 1 cut(s) 1149
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 83, 167, 628, 1122, 1394
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 775
Bse1I ACTGG 2 cut(s) 709, 780
Bse8I GATNNNNATC 1 cut(s) 1149
BseBI CCWGG 3 cut(s) 491, 1395, 1477
BseDI CCNNGG 5 cut(s) 83, 167, 628, 1122, 1394
BseGI GGATG 7 cut(s) 163, 207, 268, 713, 863, 1202, 1404
BseJI GATNNNNATC 1 cut(s) 1149
BseLI CCNNNNNNNGG 2 cut(s) 118, 775
BseMII CTCAG 5 cut(s) 201, 273, 372, 432, 567
BseNI ACTGG 2 cut(s) 709, 780
BseRI GAGGAG 1 cut(s) 448
BseXI GCAGC 6 cut(s) 4, 134, 362, 607, 746, 1357
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 1232
BshFI GGCC 5 cut(s) 233, 386, 1130, 1289, 1475
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 3 cut(s) 477, 890, 1208
BslI CCNNNNNNNGG 2 cut(s) 118, 775
BsmAI GTCTC 2 cut(s) 40, 1105
BsmBI CGTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 5 cut(s) 233, 386, 1130, 1289, 1475
Bsp119I TTCGAA 1 cut(s) 654
Bsp1286I GDGCHC 2 cut(s) 288, 377
Bsp143I GATC 5 cut(s) 108, 132, 676, 1200, 1443
BspACI CCGC 5 cut(s) 98, 744, 822, 1189, 1294
BspANI GGCC 5 cut(s) 233, 386, 1130, 1289, 1475
BspCNI CTCAG 5 cut(s) 202, 274, 373, 433, 568
BspFNI CGCG 1 cut(s) 1232
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 6 cut(s) 164, 207, 481, 573, 634, 964
BspPI GGATC 2 cut(s) 103, 1208
BspQI GCTCTTC 2 cut(s) 382, 800
BspT104I TTCGAA 1 cut(s) 654
BsrBI CCGCTC 1 cut(s) 1294
BsrI ACTGG 2 cut(s) 709, 780
BssECI CCNNGG 5 cut(s) 83, 167, 628, 1122, 1394
BssMI GATC 5 cut(s) 108, 132, 676, 1200, 1443
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 839
BssT1I CCWWGG 3 cut(s) 83, 167, 1122
Bst2BI CACGAG 1 cut(s) 839
Bst2UI CCWGG 3 cut(s) 491, 1395, 1477
Bst4CI ACNGT 4 cut(s) 370, 647, 1246, 1453
Bst6I CTCTTC 4 cut(s) 84, 382, 800, 1412
BstACI GRCGYC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 1253
BstBI TTCGAA 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 6 cut(s) 210, 282, 381, 441, 576, 1352
BstF5I GGATG 7 cut(s) 163, 207, 268, 713, 863, 1202, 1404
BstFNI CGCG 1 cut(s) 1232
BstHHI GCGC 1 cut(s) 1234
BstKTI GATC 5 cut(s) 111, 135, 679, 1203, 1446
BstMAI GTCTC 2 cut(s) 40, 1105
BstMBI GATC 5 cut(s) 108, 132, 676, 1200, 1443
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 3 cut(s) 491, 1395, 1477
BstSCI CCNGG 3 cut(s) 489, 1393, 1475
BstUI CGCG 1 cut(s) 1232
BstV1I GCAGC 6 cut(s) 4, 134, 362, 607, 746, 1357
BstV2I GAAGAC 2 cut(s) 1085, 1275
BstXI CCANNNNNNTGG 1 cut(s) 394
BsuI GTATCC 2 cut(s) 706, 1010
BsuRI GGCC 5 cut(s) 233, 386, 1130, 1289, 1475
BtgZI GCGATG 1 cut(s) 1136
BtsCI GGATG 7 cut(s) 163, 207, 268, 713, 863, 1202, 1404
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 279, 591
Cac8I GCNNGC 1 cut(s) 400
CciI TCATGA 1 cut(s) 225
CfoI GCGC 1 cut(s) 1234
Cfr13I GGNCC 1 cut(s) 571
CseI GACGC 2 cut(s) 740, 1238
Csp6I GTAC 7 cut(s) 127, 268, 517, 832, 844, 1058, 1118
CviAII CATG 9 cut(s) 198, 226, 259, 391, 725, 1030, 1051, 1157, 1219
CviQI GTAC 7 cut(s) 127, 268, 517, 832, 844, 1058, 1118
DdeI CTNAG 6 cut(s) 210, 282, 381, 441, 576, 1352
DpnI GATC 5 cut(s) 110, 134, 678, 1202, 1445
DpnII GATC 5 cut(s) 108, 132, 676, 1200, 1443
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 2 cut(s) 1287, 1473
Eam1104I CTCTTC 4 cut(s) 84, 382, 800, 1412
EarI CTCTTC 4 cut(s) 84, 382, 800, 1412
EciI GGCGGA 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 3 cut(s) 83, 167, 1122
Eco24I GRGCYC 2 cut(s) 288, 377
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 489, 1393, 1475
EcoT14I CCWWGG 3 cut(s) 83, 167, 1122
EcoT38I GRGCYC 2 cut(s) 288, 377
ErhI CCWWGG 3 cut(s) 83, 167, 1122
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 9 cut(s) 201, 229, 262, 394, 728, 1033, 1054, 1160, 1222
FatI CATG 9 cut(s) 197, 225, 258, 390, 724, 1029, 1050, 1156, 1218
FauI CCCGC 1 cut(s) 737
FblI GTMKAC 2 cut(s) 255, 729
Fnu4HI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
FokI GGATG 7 cut(s) 170, 214, 275, 720, 870, 1209, 1411
FriOI GRGCYC 2 cut(s) 288, 377
Fsp4HI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
FspBI CTAG 2 cut(s) 84, 168
GlaI GCGC 1 cut(s) 1233
GluI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
GsaI CCCAGC 1 cut(s) 502
GsuI CTGGAG 3 cut(s) 272, 889, 949
HaeIII GGCC 5 cut(s) 233, 386, 1130, 1289, 1475
HapII CCGG 3 cut(s) 477, 890, 1208
HgaI GACGC 2 cut(s) 740, 1238
HhaI GCGC 1 cut(s) 1234
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 9 cut(s) 201, 229, 262, 394, 728, 1033, 1054, 1160, 1222
Hin6I GCGC 1 cut(s) 1232
HinP1I GCGC 1 cut(s) 1232
HincII GTYRAC 2 cut(s) 256, 457
HindII GTYRAC 2 cut(s) 256, 457
HinfI GANTC 6 cut(s) 26, 175, 292, 341, 837, 997
HpaII CCGG 3 cut(s) 477, 890, 1208
HphI GGTGA 7 cut(s) 268, 466, 553, 659, 934, 1234, 1397
Hpy166II GTNNAC 8 cut(s) 43, 256, 304, 457, 730, 844, 1118, 1328
Hpy188I TCNGA 7 cut(s) 25, 31, 71, 346, 382, 1177, 1196
Hpy8I GTNNAC 8 cut(s) 43, 256, 304, 457, 730, 844, 1118, 1328
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 7 cut(s) 109, 529, 1061, 1106, 1135, 1141, 1360
HpyCH4III ACNGT 4 cut(s) 370, 647, 1246, 1453
HpyCH4IV ACGT 7 cut(s) 33, 50, 66, 252, 816, 1026, 1252
HpyCH4V TGCA 3 cut(s) 20, 329, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 6 cut(s) 210, 282, 381, 441, 576, 1352
HpySE526I ACGT 7 cut(s) 33, 50, 66, 252, 816, 1026, 1252
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 9 cut(s) 201, 229, 262, 394, 728, 1033, 1054, 1160, 1222
HspAI GCGC 1 cut(s) 1232
Kzo9I GATC 5 cut(s) 108, 132, 676, 1200, 1443
LguI GCTCTTC 2 cut(s) 382, 800
LmnI GCTCC 8 cut(s) 205, 291, 479, 638, 760, 923, 968, 1361
Lsp1109I GCAGC 6 cut(s) 4, 134, 362, 607, 746, 1357
LweI GCATC 3 cut(s) 29, 191, 819
MaeI CTAG 2 cut(s) 84, 168
MaeII ACGT 7 cut(s) 33, 50, 66, 252, 816, 1026, 1252
MaeIII GTNAC 2 cut(s) 190, 472
MalI GATC 5 cut(s) 110, 134, 678, 1202, 1445
MbiI CCGCTC 1 cut(s) 1294
MboI GATC 5 cut(s) 108, 132, 676, 1200, 1443
MhlI GDGCHC 2 cut(s) 288, 377
MlsI TGGCCA 1 cut(s) 1475
MluCI AATT 4 cut(s) 103, 247, 972, 1036
MluNI TGGCCA 1 cut(s) 1475
MlyI GAGTC 2 cut(s) 35, 831
MmeI TCCRAC 4 cut(s) 9, 135, 337, 1200
Mox20I TGGCCA 1 cut(s) 1475
MscI TGGCCA 1 cut(s) 1475
MslI CAYNNNNRTG 2 cut(s) 1155, 1244
Msp20I TGGCCA 1 cut(s) 1475
MspI CCGG 3 cut(s) 477, 890, 1208
MspR9I CCNGG 3 cut(s) 491, 1395, 1477
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 3 cut(s) 491, 1395, 1477
MvnI CGCG 1 cut(s) 1232
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 5 cut(s) 108, 132, 676, 1200, 1443
NlaIII CATG 9 cut(s) 201, 229, 262, 394, 728, 1033, 1054, 1160, 1222
NlaIV GGNNCC 6 cut(s) 164, 207, 481, 573, 634, 964
NmeAIII GCCGAG 2 cut(s) 609, 1315
NmuCI GTSAC 2 cut(s) 190, 472
NspV TTCGAA 1 cut(s) 654
PagI TCATGA 1 cut(s) 225
PciSI GCTCTTC 2 cut(s) 382, 800
PcsI WCGNNNNNNNCGW 4 cut(s) 67, 191, 651, 1200
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 4 cut(s) 175, 292, 341, 997
PkrI GCNGC 8 cut(s) 19, 124, 352, 622, 736, 1190, 1296, 1372
PleI GAGTC 2 cut(s) 34, 831
PpsI GAGTC 2 cut(s) 34, 831
Ppu21I YACGTR 1 cut(s) 1253
Psp124BI GAGCTC 1 cut(s) 288
Psp1406I AACGTT 2 cut(s) 50, 816
Psp6I CCWGG 3 cut(s) 489, 1393, 1475
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 3 cut(s) 489, 1393, 1475
PspN4I GGNNCC 6 cut(s) 164, 207, 481, 573, 634, 964
PspPI GGNCC 1 cut(s) 571
RsaI GTAC 7 cut(s) 128, 269, 518, 833, 845, 1059, 1119
RsaNI GTAC 7 cut(s) 127, 268, 517, 832, 844, 1058, 1118
RseI CAYNNNNRTG 2 cut(s) 1155, 1244
SacI GAGCTC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 254
SapI GCTCTTC 2 cut(s) 382, 800
SatI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
Sau3AI GATC 5 cut(s) 108, 132, 676, 1200, 1443
Sau96I GGNCC 1 cut(s) 571
ScaI AGTACT 1 cut(s) 1059
SchI GAGTC 2 cut(s) 35, 831
ScrFI CCNGG 3 cut(s) 491, 1395, 1477
SduI GDGCHC 2 cut(s) 288, 377
SfaNI GCATC 3 cut(s) 29, 191, 819
SfuI TTCGAA 1 cut(s) 654
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 2 cut(s) 1155, 1244
SmlI CTYRAG 2 cut(s) 10, 1406
SmoI CTYRAG 2 cut(s) 10, 1406
Sse9I AATT 4 cut(s) 103, 247, 972, 1036
SsiI CCGC 5 cut(s) 98, 744, 822, 1189, 1294
SspI AATATT 1 cut(s) 986
SspMI CTAG 2 cut(s) 84, 168
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 489, 1393, 1475
StyI CCWWGG 3 cut(s) 83, 167, 1122
TaaI ACNGT 4 cut(s) 370, 647, 1246, 1453
TaiI ACGT 7 cut(s) 36, 53, 69, 255, 819, 1029, 1255
TaqI TCGA 4 cut(s) 61, 107, 255, 654
TasI AATT 4 cut(s) 103, 247, 972, 1036
TatI WGTACW 1 cut(s) 1057
TauI GCSGC 2 cut(s) 1191, 1297
TfiI GAWTC 4 cut(s) 175, 292, 341, 997
TscAI CASTG 2 cut(s) 286, 591
TseFI GTSAC 2 cut(s) 190, 472
TseI GCWGC 6 cut(s) 17, 122, 350, 620, 734, 1370
Tsp45I GTSAC 2 cut(s) 190, 472
TspDTI ATGAA 2 cut(s) 1392, 1505
TspGWI ACGGA 3 cut(s) 28, 779, 849
TspRI CASTG 2 cut(s) 286, 591
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 777
XmaJI CCTAGG 2 cut(s) 83, 167
XmiI GTMKAC 2 cut(s) 255, 729
XspI CTAG 2 cut(s) 84, 168
ZraI GACGTC 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.