pycom09g18660

Belongs to the group II decarboxylase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
19420817 .. 19427861
7045 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18660.7

Sequence Viewer

Length: 1506 bp
ATGGCTCTCTCAAGGGCTGCATCGGAGTCGGACGTCTCCATCCACTCAACCTTCGCTTCTCGATACGTCCGAACTTCTCTTCCTAGGTTCAAAATGGCGGAAAATTCGATCCCGAAGGAGGCAGCGTACCAGATCATAAACGATGAGCTGATGTTGGATGGGAACCCTAGGCTGAATCTGGCATCGTTCGTGACGACATGGATGGAGCCTGAGTGTGATAAACTCATGATGGCCTCCATCAACAAGAACTACGTCGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGGTGCGTAAACATGATAGCTCATCTGTTCAATGCACCATTGGGAGATTCAGAGGCAGCAGTTGGAGTGGGAACGGTGGGCTCTTCTGAGGCCATCATGTTGGCTGGCTTGGCATTCAAGAGGAAGTGGCAAAACAAGAGGAGAGCTGAGGGCAAACCCGTTGACAAACCCAACATTGTCACCGGAGCCAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTATTTTGAGGTGGAGTTGAAGGAGGTGAAGTTGAGGGAGGGCTACTATGTAATGGACCCTGAGAAAGCAGTGGAAATGGTTGATGAGAACACAATCTGCGTTGCTGCTATCCTCGGCTCCACCCTCAATGGTGAGTTCGAAGATGTCAAGCTCTTGAATGATCTCTTGATAGAGAAGAACAAGGAAACTGGATGGGATACTCCAATCCATGTAGACGCAGCAAGTGGTGGGTTTATTGCTCCATTTCTTTACCCAGAACTGGAATGGGATTTCCGTTTGCCCCTTGTGAAGAGCATCAACGTTAGCGGACACAAGTACGGACTTGTGTACGCAGGGATTGGATGGGTCATCTGGAGGAACACAGAAGATTTGCCGGAGGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAACCTACTTTCACCCTCAACTTCTCAAAAGGCTCCAGTCAAGTTATTGCTCAATATTATCAACTGATTCGCTTGGGTTTTGAGGGATACAGGAATGTCATGGAAAATTGTCATGAAAACATGATAGTACTAAAAGAAGGATTGGAGAAGACAGGTCGCTTCAACATAGTCTCCAAAGACGAAGGTGTACCCTTGGTGGCCTTCTCTTTGAAGGACAACCACCGCCACGACGAGTTTGAAATCTCCGACTTGCTTCGCCGCTTTGGATGGATCGTTCCGGCATACACCATGCCCCCAGACGCGCAACACATCACCGTGCTACGTGTTGTCATTAGGGAAGACTTCTCTCGCACTTTGGCGGAGCGGCTCGTGAATGACATCAAAAAAGTGTTGAGTGAACTTGACAGGCTTCCATCTAAGCTTAGCTCCAATGTGAAGGCTGCTGATGAAGACGGTGAGAAACCTGGGACGACACTTGAGAGTAAGAAGAGTGATCTGGAGAAAACAAGGGAGATCACGACAATTTGGAGGAAGTTTGTTATGGCCAGGAAGCAGAAGATGAATGTTGTTTGTTAG

Protein Analysis

502

Amino Acids

56.85

Weight (kDa)

5.52

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 1294
AccI GTMKAC 2 cut(s) 255, 729
AccII CGCG 1 cut(s) 1232
AciI CCGC 6 cut(s) 98, 822, 1153, 1189, 1289, 1294
AclI AACGTT 1 cut(s) 816
AclWI GGATC 2 cut(s) 103, 1208
AcoI YGGCCR 1 cut(s) 1473
AcsI RAATTY 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 6 cut(s) 128, 269, 833, 845, 1059, 1119
AfiI CCNNNNNNNGG 2 cut(s) 118, 775
AflIII ACRYGT 1 cut(s) 1252
AgsI TTSAA 8 cut(s) 91, 325, 412, 535, 673, 1093, 1141, 1169
AjnI CCWGG 3 cut(s) 489, 1393, 1475
AloI GAACNNNNNNTCC 6 cut(s) 64, 96, 888, 920, 1188, 1220
AluBI AGCT 8 cut(s) 148, 286, 314, 440, 667, 926, 1351, 1356
AluI AGCT 8 cut(s) 148, 286, 314, 440, 667, 926, 1351, 1356
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 40, 1105
AlwI GGATC 2 cut(s) 103, 1208
AoxI GGCC 4 cut(s) 231, 384, 1128, 1473
ApeKI GCWGC 6 cut(s) 17, 122, 350, 620, 734, 1370
ApoI RAATTY 1 cut(s) 103
AspA2I CCTAGG 2 cut(s) 83, 167
AspLEI GCGC 1 cut(s) 1234
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 7 cut(s) 268, 466, 553, 659, 934, 1234, 1397
AsuII TTCGAA 1 cut(s) 654
AvaII GGWCC 1 cut(s) 571
AvrII CCTAGG 2 cut(s) 83, 167
BalI TGGCCA 1 cut(s) 1475
BanII GRGCYC 2 cut(s) 288, 377
BauI CACGAG 1 cut(s) 1298
BbsI GAAGAC 3 cut(s) 1085, 1275, 1386
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 6 cut(s) 4, 134, 362, 607, 746, 1357
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BciT130I CCWGG 3 cut(s) 491, 1395, 1477
BciVI GTATCC 2 cut(s) 706, 1010
BcoDI GTCTC 2 cut(s) 40, 1105
BfaI CTAG 2 cut(s) 84, 168
BfuI GTATCC 2 cut(s) 706, 1010
BisI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
BlnI CCTAGG 2 cut(s) 83, 167
BlpI GCTNAGC 1 cut(s) 1352
BlsI GCNGC 8 cut(s) 19, 124, 352, 622, 736, 1190, 1296, 1372
BmcAI AGTACT 1 cut(s) 1059
Bme1390I CCNGG 3 cut(s) 491, 1395, 1477
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 6 cut(s) 164, 207, 481, 573, 634, 964
BmrFI CCNGG 3 cut(s) 491, 1395, 1477
BmsI GCATC 3 cut(s) 29, 191, 819
BpiI GAAGAC 3 cut(s) 1085, 1275, 1386
BpmI CTGGAG 4 cut(s) 272, 889, 949, 1448
Bpu10I CCTNAGC 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 1352
Bpu14I TTCGAA 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 1427
BsaAI YACGTR 1 cut(s) 1253
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 83, 167, 628, 1122, 1394
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 775
Bse1I ACTGG 3 cut(s) 709, 780, 966
BseBI CCWGG 3 cut(s) 491, 1395, 1477
BseDI CCNNGG 5 cut(s) 83, 167, 628, 1122, 1394
BseGI GGATG 7 cut(s) 39, 163, 207, 268, 713, 863, 1202
BseLI CCNNNNNNNGG 2 cut(s) 118, 775
BseMII CTCAG 5 cut(s) 201, 273, 372, 432, 567
BseNI ACTGG 3 cut(s) 709, 780, 966
BseRI GAGGAG 1 cut(s) 448
BseXI GCAGC 6 cut(s) 4, 134, 362, 607, 746, 1357
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 1232
BshFI GGCC 4 cut(s) 233, 386, 1130, 1475
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 3 cut(s) 477, 890, 1208
BslFI GGGAC 1 cut(s) 1411
BslI CCNNNNNNNGG 2 cut(s) 118, 775
BsmAI GTCTC 2 cut(s) 40, 1105
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 1411
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 4 cut(s) 233, 386, 1130, 1475
Bsp119I TTCGAA 1 cut(s) 654
Bsp1286I GDGCHC 2 cut(s) 288, 377
Bsp143I GATC 6 cut(s) 108, 132, 676, 1200, 1423, 1443
Bsp1720I GCTNAGC 1 cut(s) 1352
BspACI CCGC 6 cut(s) 98, 822, 1153, 1189, 1289, 1294
BspANI GGCC 4 cut(s) 233, 386, 1130, 1475
BspCNI CTCAG 5 cut(s) 202, 274, 373, 433, 568
BspFNI CGCG 1 cut(s) 1232
BspHI TCATGA 2 cut(s) 225, 1042
BspLI GGNNCC 6 cut(s) 164, 207, 481, 573, 634, 964
BspPI GGATC 2 cut(s) 103, 1208
BspQI GCTCTTC 2 cut(s) 382, 800
BspT104I TTCGAA 1 cut(s) 654
BsrBI CCGCTC 1 cut(s) 1294
BsrI ACTGG 3 cut(s) 709, 780, 966
BssECI CCNNGG 5 cut(s) 83, 167, 628, 1122, 1394
BssMI GATC 6 cut(s) 108, 132, 676, 1200, 1423, 1443
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 1298
BssT1I CCWWGG 3 cut(s) 83, 167, 1122
Bst2BI CACGAG 1 cut(s) 1298
Bst2UI CCWGG 3 cut(s) 491, 1395, 1477
Bst4CI ACNGT 3 cut(s) 370, 1246, 1385
Bst6I CTCTTC 4 cut(s) 84, 382, 800, 1412
BstACI GRCGYC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 1253
BstBI TTCGAA 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 7 cut(s) 210, 282, 381, 441, 576, 1347, 1352
BstF5I GGATG 7 cut(s) 39, 163, 207, 268, 713, 863, 1202
BstFNI CGCG 1 cut(s) 1232
BstHHI GCGC 1 cut(s) 1234
BstKTI GATC 6 cut(s) 111, 135, 679, 1203, 1426, 1446
BstMAI GTCTC 2 cut(s) 40, 1105
BstMBI GATC 6 cut(s) 108, 132, 676, 1200, 1423, 1443
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 3 cut(s) 491, 1395, 1477
BstSCI CCNGG 3 cut(s) 489, 1393, 1475
BstUI CGCG 1 cut(s) 1232
BstV1I GCAGC 6 cut(s) 4, 134, 362, 607, 746, 1357
BstV2I GAAGAC 3 cut(s) 1085, 1275, 1386
BstXI CCANNNNNNTGG 1 cut(s) 394
BsuI GTATCC 2 cut(s) 706, 1010
BsuRI GGCC 4 cut(s) 233, 386, 1130, 1475
BtsCI GGATG 7 cut(s) 39, 163, 207, 268, 713, 863, 1202
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 279, 591
Cac8I GCNNGC 1 cut(s) 400
CciI TCATGA 2 cut(s) 225, 1042
CfoI GCGC 1 cut(s) 1234
Cfr13I GGNCC 1 cut(s) 571
CseI GACGC 2 cut(s) 740, 1238
Csp6I GTAC 6 cut(s) 127, 268, 832, 844, 1058, 1118
CviQI GTAC 6 cut(s) 127, 268, 832, 844, 1058, 1118
DdeI CTNAG 7 cut(s) 210, 282, 381, 441, 576, 1347, 1352
DpnI GATC 6 cut(s) 110, 134, 678, 1202, 1425, 1445
DpnII GATC 6 cut(s) 108, 132, 676, 1200, 1423, 1443
EaeI YGGCCR 1 cut(s) 1473
Eam1104I CTCTTC 4 cut(s) 84, 382, 800, 1412
EarI CTCTTC 4 cut(s) 84, 382, 800, 1412
EciI GGCGGA 2 cut(s) 113, 1304
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 3 cut(s) 83, 167, 1122
Eco24I GRGCYC 2 cut(s) 288, 377
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 489, 1393, 1475
EcoT14I CCWWGG 3 cut(s) 83, 167, 1122
EcoT38I GRGCYC 2 cut(s) 288, 377
ErhI CCWWGG 3 cut(s) 83, 167, 1122
Esp3I CGTCTC 1 cut(s) 40
FaqI GGGAC 1 cut(s) 1411
FblI GTMKAC 2 cut(s) 255, 729
Fnu4HI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
FokI GGATG 7 cut(s) 26, 170, 214, 275, 720, 870, 1209
FriOI GRGCYC 2 cut(s) 288, 377
Fsp4HI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
FspBI CTAG 2 cut(s) 84, 168
GlaI GCGC 1 cut(s) 1233
GluI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
GsaI CCCAGC 1 cut(s) 502
GsuI CTGGAG 4 cut(s) 272, 889, 949, 1448
HaeIII GGCC 4 cut(s) 233, 386, 1130, 1475
HapII CCGG 3 cut(s) 477, 890, 1208
HgaI GACGC 2 cut(s) 740, 1238
HhaI GCGC 1 cut(s) 1234
Hin1I GRCGYC 1 cut(s) 33
Hin6I GCGC 1 cut(s) 1232
HinP1I GCGC 1 cut(s) 1232
HincII GTYRAC 2 cut(s) 256, 457
HindII GTYRAC 2 cut(s) 256, 457
HindIII AAGCTT 1 cut(s) 1349
HinfI GANTC 5 cut(s) 26, 175, 292, 341, 997
HpaII CCGG 3 cut(s) 477, 890, 1208
HphI GGTGA 7 cut(s) 268, 466, 553, 659, 934, 1234, 1397
Hpy166II GTNNAC 7 cut(s) 256, 304, 457, 730, 844, 1118, 1328
Hpy188I TCNGA 6 cut(s) 25, 31, 71, 346, 382, 1177
Hpy8I GTNNAC 7 cut(s) 256, 304, 457, 730, 844, 1118, 1328
Hpy99I CGWCG 2 cut(s) 257, 1163
HpyAV CCTTC 8 cut(s) 61, 109, 529, 1061, 1106, 1135, 1141, 1360
HpyCH4III ACNGT 3 cut(s) 370, 1246, 1385
HpyCH4IV ACGT 5 cut(s) 33, 66, 252, 816, 1252
HpyCH4V TGCA 3 cut(s) 20, 329, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 7 cut(s) 210, 282, 381, 441, 576, 1347, 1352
HpySE526I ACGT 5 cut(s) 33, 66, 252, 816, 1252
Hsp92I GRCGYC 1 cut(s) 33
HspAI GCGC 1 cut(s) 1232
Kzo9I GATC 6 cut(s) 108, 132, 676, 1200, 1423, 1443
LguI GCTCTTC 2 cut(s) 382, 800
LmnI GCTCC 9 cut(s) 205, 291, 479, 638, 760, 923, 968, 1291, 1361
Lsp1109I GCAGC 6 cut(s) 4, 134, 362, 607, 746, 1357
LweI GCATC 3 cut(s) 29, 191, 819
MaeI CTAG 2 cut(s) 84, 168
MaeII ACGT 5 cut(s) 33, 66, 252, 816, 1252
MaeIII GTNAC 3 cut(s) 190, 274, 472
MalI GATC 6 cut(s) 110, 134, 678, 1202, 1425, 1445
MbiI CCGCTC 1 cut(s) 1294
MboI GATC 6 cut(s) 108, 132, 676, 1200, 1423, 1443
MhlI GDGCHC 2 cut(s) 288, 377
MlsI TGGCCA 1 cut(s) 1475
MluCI AATT 3 cut(s) 103, 1036, 1452
MluNI TGGCCA 1 cut(s) 1475
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 4 cut(s) 9, 135, 337, 1200
Mox20I TGGCCA 1 cut(s) 1475
MscI TGGCCA 1 cut(s) 1475
MslI CAYNNNNRTG 1 cut(s) 1244
Msp20I TGGCCA 1 cut(s) 1475
MspI CCGG 3 cut(s) 477, 890, 1208
MspR9I CCNGG 3 cut(s) 491, 1395, 1477
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 3 cut(s) 491, 1395, 1477
MvnI CGCG 1 cut(s) 1232
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 6 cut(s) 108, 132, 676, 1200, 1423, 1443
NlaIV GGNNCC 6 cut(s) 164, 207, 481, 573, 634, 964
NmeAIII GCCGAG 1 cut(s) 609
NmuCI GTSAC 3 cut(s) 190, 274, 472
NspV TTCGAA 1 cut(s) 654
PagI TCATGA 2 cut(s) 225, 1042
PciSI GCTCTTC 2 cut(s) 382, 800
PcsI WCGNNNNNNNCGW 2 cut(s) 67, 191
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 4 cut(s) 175, 292, 341, 997
PkrI GCNGC 8 cut(s) 19, 124, 352, 622, 736, 1190, 1296, 1372
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 1253
Psp124BI GAGCTC 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 816
Psp6I CCWGG 3 cut(s) 489, 1393, 1475
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 3 cut(s) 489, 1393, 1475
PspN4I GGNNCC 6 cut(s) 164, 207, 481, 573, 634, 964
PspPI GGNCC 1 cut(s) 571
RsaI GTAC 6 cut(s) 128, 269, 833, 845, 1059, 1119
RsaNI GTAC 6 cut(s) 127, 268, 832, 844, 1058, 1118
RseI CAYNNNNRTG 1 cut(s) 1244
SacI GAGCTC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 254
SapI GCTCTTC 2 cut(s) 382, 800
SatI GCNGC 8 cut(s) 18, 123, 351, 621, 735, 1189, 1295, 1371
Sau3AI GATC 6 cut(s) 108, 132, 676, 1200, 1423, 1443
Sau96I GGNCC 1 cut(s) 571
ScaI AGTACT 1 cut(s) 1059
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 491, 1395, 1477
SduI GDGCHC 2 cut(s) 288, 377
SfaNI GCATC 3 cut(s) 29, 191, 819
SfuI TTCGAA 1 cut(s) 654
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 1244
SmlI CTYRAG 2 cut(s) 10, 1406
SmoI CTYRAG 2 cut(s) 10, 1406
Sse9I AATT 3 cut(s) 103, 1036, 1452
SsiI CCGC 6 cut(s) 98, 822, 1153, 1189, 1289, 1294
SspI AATATT 1 cut(s) 986
SspMI CTAG 2 cut(s) 84, 168
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 489, 1393, 1475
StyI CCWWGG 3 cut(s) 83, 167, 1122
TaaI ACNGT 3 cut(s) 370, 1246, 1385
TaiI ACGT 5 cut(s) 36, 69, 255, 819, 1255
TaqI TCGA 4 cut(s) 61, 107, 255, 654
TasI AATT 3 cut(s) 103, 1036, 1452
TatI WGTACW 1 cut(s) 1057
TauI GCSGC 2 cut(s) 1191, 1297
TfiI GAWTC 4 cut(s) 175, 292, 341, 997
TscAI CASTG 2 cut(s) 286, 591
TseFI GTSAC 3 cut(s) 190, 274, 472
TseI GCWGC 6 cut(s) 17, 122, 350, 620, 734, 1370
Tsp45I GTSAC 3 cut(s) 190, 274, 472
TspDTI ATGAA 3 cut(s) 1059, 1392, 1505
TspGWI ACGGA 2 cut(s) 779, 849
TspRI CASTG 2 cut(s) 286, 591
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 777
XmaJI CCTAGG 2 cut(s) 83, 167
XmiI GTMKAC 2 cut(s) 255, 729
XspI CTAG 2 cut(s) 84, 168
ZraI GACGTC 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.