AT1G66250

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
24692799 .. 24695660
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66250.1

Sequence Viewer

Length: 1518 bp
ATGGCTTCTCTTCTCCATCTTCTTCTCCTTTCTCTTTCTCTTTTAGTTCTTGCTTCAGCTTCTCCTTCTCCTCCAGCTGATGAAGGTTCATATATTGGAGTAAACATAGGGACTGATCTTTCTGATATGCCACATCCAACACAAGTTGTTGCTCTACTAAAAGCTCAAGAAATCCGACATATTCGATTATACAACGCTGATCCCGGGTTGTTGATTGCTCTAGCAAACACTGGTATCAAAGTTATAATCTCCATTCCTAATGACCAGCTTCTTGGTATAGGTCAATCCAATTCAACCGCAGCGAATTGGGTTAAACGCAATGTCATTGCACATTACCCTGCAACGATGATAACCGCGGTTTCTGTTGGCTCTGAGGTGCTAACCAGTCTCTCTAATGCAGCACCTGTTCTAGTCAGTGCTATAAAGAACGTTCATGCTGCTTTACTCTCGGCGAATCTTGACAAGTTGATAAAAGTTTCTACTCCTTTATCAACTTCCTTGATTCTTGATCCTTTTCCTCCATCGCAAGCGTTCTTTAACCGTTCTTTGAATGCGGTTATAGTTCCGTTACTAAGCTTCTTGCAGTCAACAAACTCATACCTGATGGTGAATGTGTATCCATACATTGACTATATGCAATCAAACGGTGTGATTCCGTTAGACTACGCGTTGTTCAAACCGATACCTCCAAACAAAGAAGCTGTTGATGCAAACACTCTTGTTCGTTACTCAAACGCTTTTGATGCAATGGTTGATGCAACGTACTTCGCTATGGCGTTCCTCAACTTCACAAACATTCCGGTTTTAGTAACCGAATCAGGCTGGCCTTCGAAAGGAGAAACCAATGAGCCTGATGCTACACTTGACAACGCCAACACTTACAACAGTAATCTCATTAGACATGTTCTTAACAAGACCGGAACTCCGAAACGCCCGGGGATCGCTGTGAGTACTTATATTTACGAGCTTTACAATGAAGATACAAAAGCAGGTTTATCAGAGAAGAATTGGGGGTTGTTTAATGCAAATGGTGAACCGGTTTACGTACTTCGGTTGACTAACTCGGGCTCGGTTCTAGCTAACGATACAACGAACCAGACTTATTGTACTGCAAGAGAAGGTGCTGATACAAAGATGCTTCAAGCTGCTCTTGATTGGGCTTGTGGTCCTGGAAAGATTGATTGTTCGCCTATTAAGCAAGGAGAGACTTGTTATGAACCGGATAATGTCGTCGCGCATGCTAACTACGCGTTTGATACTTATTATCATCAGACTGGGAATAATCCTGATGCTTGCAACTTCAATGGTGTTGCTAGTATCACTACCACAGATCCAAGTCATGGTACATGTGTGTTTGCTGGGAGCCGCGGTAATGGTAGAAACGGGACGTCTGTGAACATAACAGCGCCATCGGCAAACTCAACAACTTCTTCTGGAATACGGAGTGATTTGTATTACAGTCGGGGTATATGGAGTATCTTGACAGTAATGATTTTGAACGTTGCTAATATCTTGTGA

Protein Analysis

505

Amino Acids

54.21

Weight (kDa)

5.46

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 32 - 350 5.1e-78 Glycosyl hydrolases family 17
X8 PF07983 368 - 438 5.6e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011672)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AatII GACGTC 1 cut(s) 1391
Acc36I ACCTGC 1 cut(s) 980
AccB7I CCANNNNNTGG 1 cut(s) 1340
AccII CGCG 5 cut(s) 356, 668, 1235, 1250, 1368
AciI CCGC 6 cut(s) 297, 354, 356, 554, 1366, 1368
AclI AACGTT 2 cut(s) 429, 1500
AclWI GGATC 4 cut(s) 194, 503, 947, 1325
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 1388
AfaI GTAC 5 cut(s) 764, 952, 1047, 1108, 1345
AfiI CCNNNNNNNGG 2 cut(s) 833, 1340
AflIII ACRYGT 4 cut(s) 666, 901, 1248, 1346
AgeI ACCGGT 1 cut(s) 1036
AgsI TTSAA 6 cut(s) 294, 550, 676, 1142, 1303, 1498
AjnI CCWGG 1 cut(s) 1168
AluBI AGCT 9 cut(s) 59, 77, 164, 268, 576, 701, 967, 1079, 1145
AluI AGCT 9 cut(s) 59, 77, 164, 268, 576, 701, 967, 1079, 1145
Alw26I GTCTC 2 cut(s) 392, 1199
AlwI GGATC 4 cut(s) 194, 503, 947, 1325
AlwNI CAGNNNCTG 1 cut(s) 404
Ama87I CYCGRG 3 cut(s) 203, 934, 1063
AoxI GGCC 1 cut(s) 824
ApeKI GCWGC 4 cut(s) 299, 398, 437, 1145
AsiGI ACCGGT 1 cut(s) 1036
AspLEI GCGC 2 cut(s) 1237, 1408
AspS9I GGNCC 1 cut(s) 1166
AsuC2I CCSGG 4 cut(s) 204, 205, 935, 936
AsuHPI GGTGA 2 cut(s) 619, 1043
AsuII TTCGAA 1 cut(s) 830
AvaI CYCGRG 3 cut(s) 203, 934, 1063
AvaII GGWCC 1 cut(s) 1166
BaeI ACNNNNGTAYC 4 cut(s) 217, 250, 1335, 1368
BanII GRGCYC 1 cut(s) 1070
BbvI GCAGC 4 cut(s) 311, 410, 424, 1132
BccI CCATC 4 cut(s) 24, 529, 598, 1417
BciT130I CCWGG 1 cut(s) 1170
BciVI GTATCC 1 cut(s) 627
BcnI CCSGG 4 cut(s) 204, 205, 935, 936
BcoDI GTCTC 2 cut(s) 392, 1199
BfaI CTAG 4 cut(s) 221, 410, 1076, 1314
BfoI RGCGCY 1 cut(s) 1409
BfuAI ACCTGC 1 cut(s) 980
BfuI GTATCC 1 cut(s) 627
BisI GCNGC 5 cut(s) 300, 399, 438, 1146, 1366
BlsI GCNGC 5 cut(s) 301, 400, 439, 1147, 1367
BmcAI AGTACT 1 cut(s) 952
Bme1390I CCNGG 5 cut(s) 204, 205, 935, 936, 1170
Bme18I GGWCC 1 cut(s) 1166
BmeT110I CYCGRG 3 cut(s) 203, 934, 1063
BmgT120I GGNCC 1 cut(s) 1166
BmiI GGNNCC 1 cut(s) 1364
BmrFI CCNGG 5 cut(s) 204, 205, 935, 936, 1170
BmrI ACTGGG 1 cut(s) 1284
BmsI GCATC 6 cut(s) 697, 733, 745, 844, 1125, 1279
BmuI ACTGGG 1 cut(s) 1284
BpmI CTGGAG 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 830
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 4 cut(s) 204, 205, 935, 936
BsaAI YACGTR 1 cut(s) 1045
BsaHI GRCGYC 1 cut(s) 1388
BsaJI CCNNGG 5 cut(s) 203, 354, 934, 935, 1366
BsaWI WCCGGW 4 cut(s) 799, 917, 1036, 1219
BsaXI ACNNNNNCTCC 4 cut(s) 907, 937, 1354, 1384
Bsc4I CCNNNNNNNGG 2 cut(s) 833, 1340
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 3 cut(s) 235, 384, 1279
Bse3DI GCAATG 3 cut(s) 324, 325, 753
BseBI CCWGG 1 cut(s) 1170
BseDI CCNNGG 5 cut(s) 203, 354, 934, 935, 1366
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 833, 1340
BseMI GCAATG 3 cut(s) 324, 325, 753
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 3 cut(s) 235, 384, 1279
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 4 cut(s) 311, 410, 424, 1132
BseYI CCCAGC 1 cut(s) 1358
Bsh1236I CGCG 5 cut(s) 356, 668, 1235, 1250, 1368
BshFI GGCC 1 cut(s) 826
BshTI ACCGGT 1 cut(s) 1036
BsiHKCI CYCGRG 3 cut(s) 203, 934, 1063
BsiSI CCGG 6 cut(s) 204, 800, 918, 935, 1037, 1220
BslFI GGGAC 2 cut(s) 124, 1399
BslI CCNNNNNNNGG 2 cut(s) 833, 1340
BsmAI GTCTC 2 cut(s) 392, 1199
BsmFI GGGAC 2 cut(s) 124, 1399
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 1 cut(s) 826
BsoBI CYCGRG 3 cut(s) 203, 934, 1063
Bsp119I TTCGAA 1 cut(s) 830
Bsp1286I GDGCHC 1 cut(s) 1070
Bsp143I GATC 5 cut(s) 115, 199, 508, 939, 1330
BspACI CCGC 6 cut(s) 297, 354, 356, 554, 1366, 1368
BspANI GGCC 1 cut(s) 826
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 5 cut(s) 356, 668, 1235, 1250, 1368
BspLI GGNNCC 1 cut(s) 1364
BspMI ACCTGC 1 cut(s) 980
BspPI GGATC 4 cut(s) 194, 503, 947, 1325
BspT104I TTCGAA 1 cut(s) 830
BsrDI GCAATG 3 cut(s) 324, 325, 753
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 3 cut(s) 235, 384, 1279
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 5 cut(s) 203, 354, 934, 935, 1366
BssMI GATC 5 cut(s) 115, 199, 508, 939, 1330
BssNI GRCGYC 1 cut(s) 1388
Bst2UI CCWGG 1 cut(s) 1170
Bst4CI ACNGT 5 cut(s) 542, 647, 887, 1460, 1486
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 1388
BstBAI YACGTR 1 cut(s) 1045
BstBI TTCGAA 1 cut(s) 830
BstC8I GCNNGC 4 cut(s) 528, 824, 1239, 1294
BstDEI CTNAG 2 cut(s) 372, 572
BstDSI CCRYGG 2 cut(s) 354, 1366
BstENI CCTNNNNNAGG 1 cut(s) 831
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 5 cut(s) 356, 668, 1235, 1250, 1368
BstH2I RGCGCY 1 cut(s) 1409
BstHHI GCGC 2 cut(s) 1237, 1408
BstKTI GATC 5 cut(s) 118, 202, 511, 942, 1333
BstMAI GTCTC 2 cut(s) 392, 1199
BstMBI GATC 5 cut(s) 115, 199, 508, 939, 1330
BstMWI GCNNNNNNNGC 5 cut(s) 707, 743, 1195, 1247, 1412
BstNI CCWGG 1 cut(s) 1170
BstNSI RCATGY 3 cut(s) 905, 1241, 1350
BstSCI CCNGG 5 cut(s) 202, 203, 933, 934, 1168
BstSNI TACGTA 1 cut(s) 1045
BstUI CGCG 5 cut(s) 356, 668, 1235, 1250, 1368
BstV1I GCAGC 4 cut(s) 311, 410, 424, 1132
BstX2I RGATCY 1 cut(s) 1330
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 1 cut(s) 1330
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 1 cut(s) 826
BtgI CCRYGG 2 cut(s) 354, 1366
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 228, 421
BveI ACCTGC 1 cut(s) 980
Cac8I GCNNGC 4 cut(s) 528, 824, 1239, 1294
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 2 cut(s) 1237, 1408
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 1 cut(s) 1166
Cfr42I CCGCGG 2 cut(s) 357, 1369
Cfr9I CCCGGG 2 cut(s) 203, 934
Csp6I GTAC 5 cut(s) 763, 951, 1046, 1107, 1344
CspAI ACCGGT 1 cut(s) 1036
CviAII CATG 5 cut(s) 434, 902, 1238, 1340, 1347
CviQI GTAC 5 cut(s) 763, 951, 1046, 1107, 1344
DdeI CTNAG 2 cut(s) 372, 572
DpnI GATC 5 cut(s) 117, 201, 510, 941, 1332
DpnII GATC 5 cut(s) 115, 199, 508, 939, 1330
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco105I TACGTA 1 cut(s) 1045
Eco24I GRGCYC 1 cut(s) 1070
Eco47I GGWCC 1 cut(s) 1166
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 3 cut(s) 203, 934, 1063
EcoNI CCTNNNNNAGG 1 cut(s) 831
EcoRII CCWGG 1 cut(s) 1168
EcoT38I GRGCYC 1 cut(s) 1070
FaeI CATG 5 cut(s) 437, 905, 1241, 1343, 1350
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FaqI GGGAC 2 cut(s) 124, 1399
FatI CATG 5 cut(s) 433, 901, 1237, 1339, 1346
Fnu4HI GCNGC 5 cut(s) 300, 399, 438, 1146, 1366
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 1070
Fsp4HI GCNGC 5 cut(s) 300, 399, 438, 1146, 1366
FspBI CTAG 4 cut(s) 221, 410, 1076, 1314
GlaI GCGC 2 cut(s) 1236, 1407
GluI GCNGC 5 cut(s) 300, 399, 438, 1146, 1366
GsaI CCCAGC 1 cut(s) 1362
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 1409
HaeIII GGCC 1 cut(s) 826
HapII CCGG 6 cut(s) 204, 800, 918, 935, 1037, 1220
HhaI GCGC 2 cut(s) 1237, 1408
Hin1I GRCGYC 1 cut(s) 1388
Hin1II CATG 5 cut(s) 437, 905, 1241, 1343, 1350
Hin6I GCGC 2 cut(s) 1235, 1406
HinP1I GCGC 2 cut(s) 1235, 1406
HincII GTYRAC 2 cut(s) 588, 1056
HindII GTYRAC 2 cut(s) 588, 1056
HindIII AAGCTT 1 cut(s) 574
HinfI GANTC 4 cut(s) 454, 502, 652, 815
HpaII CCGG 6 cut(s) 204, 800, 918, 935, 1037, 1220
HphI GGTGA 2 cut(s) 619, 1043
Hpy166II GTNNAC 6 cut(s) 103, 588, 1034, 1042, 1056, 1396
Hpy188I TCNGA 6 cut(s) 124, 176, 373, 927, 1000, 1272
Hpy188III TCNNGA 7 cut(s) 167, 458, 506, 1151, 1286, 1434, 1480
Hpy8I GTNNAC 6 cut(s) 103, 588, 1034, 1042, 1056, 1396
Hpy99I CGWCG 1 cut(s) 1235
HpyAV CCTTC 4 cut(s) 75, 77, 837, 1112
HpyCH4III ACNGT 5 cut(s) 542, 647, 887, 1460, 1486
HpyCH4IV ACGT 5 cut(s) 429, 761, 1044, 1388, 1500
HpyF10VI GCNNNNNNNGC 5 cut(s) 707, 743, 1195, 1247, 1412
HpyF3I CTNAG 2 cut(s) 372, 572
HpySE526I ACGT 5 cut(s) 429, 761, 1044, 1388, 1500
Hsp92I GRCGYC 1 cut(s) 1388
Hsp92II CATG 5 cut(s) 437, 905, 1241, 1343, 1350
HspAI GCGC 2 cut(s) 1235, 1406
KspI CCGCGG 2 cut(s) 357, 1369
Kzo9I GATC 5 cut(s) 115, 199, 508, 939, 1330
LmnI GCTCC 1 cut(s) 1362
Lsp1109I GCAGC 4 cut(s) 311, 410, 424, 1132
LweI GCATC 6 cut(s) 697, 733, 745, 844, 1125, 1279
MaeI CTAG 4 cut(s) 221, 410, 1076, 1314
MaeII ACGT 5 cut(s) 429, 761, 1044, 1388, 1500
MaeIII GTNAC 3 cut(s) 567, 725, 808
MalI GATC 5 cut(s) 117, 201, 510, 941, 1332
MboI GATC 5 cut(s) 115, 199, 508, 939, 1330
MboII GAAGA 5 cut(s) 11, 14, 989, 1015, 1422
MflI RGATCY 1 cut(s) 1330
MhlI GDGCHC 1 cut(s) 1070
MluCI AATT 3 cut(s) 289, 304, 1006
MluI ACGCGT 2 cut(s) 666, 1248
MmeI TCCRAC 2 cut(s) 161, 199
MnlI CCTC 5 cut(s) 81, 367, 528, 696, 791
MseI TTAA 5 cut(s) 312, 537, 909, 1020, 1194
MspA1I CMGCKG 3 cut(s) 77, 356, 1368
MspI CCGG 6 cut(s) 204, 800, 918, 935, 1037, 1220
MspR9I CCNGG 5 cut(s) 204, 205, 935, 936, 1170
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 1 cut(s) 1170
MvnI CGCG 5 cut(s) 356, 668, 1235, 1250, 1368
MwoI GCNNNNNNNGC 5 cut(s) 707, 743, 1195, 1247, 1412
NciI CCSGG 4 cut(s) 204, 205, 935, 936
NdeII GATC 5 cut(s) 115, 199, 508, 939, 1330
NlaIII CATG 5 cut(s) 437, 905, 1241, 1343, 1350
NlaIV GGNNCC 1 cut(s) 1364
NmeAIII GCCGAG 1 cut(s) 428
NspI RCATGY 3 cut(s) 905, 1241, 1350
NspV TTCGAA 1 cut(s) 830
PaeI GCATGC 1 cut(s) 1241
PciI ACATGT 2 cut(s) 901, 1346
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 4 cut(s) 454, 502, 652, 815
PflMI CCANNNNNTGG 1 cut(s) 1340
PfoI TCCNGGA 1 cut(s) 1168
PinAI ACCGGT 1 cut(s) 1036
PkrI GCNGC 5 cut(s) 301, 400, 439, 1147, 1367
Ppu21I YACGTR 1 cut(s) 1045
PscI ACATGT 2 cut(s) 901, 1346
PsiI TTATAA 1 cut(s) 245
Psp1406I AACGTT 2 cut(s) 429, 1500
Psp6I CCWGG 1 cut(s) 1168
PspFI CCCAGC 1 cut(s) 1358
PspGI CCWGG 1 cut(s) 1168
PspN4I GGNNCC 1 cut(s) 1364
PspPI GGNCC 1 cut(s) 1166
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 1330
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 5 cut(s) 764, 952, 1047, 1108, 1345
RsaNI GTAC 5 cut(s) 763, 951, 1046, 1107, 1344
SacII CCGCGG 2 cut(s) 357, 1369
SaqAI TTAA 5 cut(s) 312, 537, 909, 1020, 1194
SatI GCNGC 5 cut(s) 300, 399, 438, 1146, 1366
Sau3AI GATC 5 cut(s) 115, 199, 508, 939, 1330
Sau96I GGNCC 1 cut(s) 1166
ScaI AGTACT 1 cut(s) 952
ScrFI CCNGG 5 cut(s) 204, 205, 935, 936, 1170
SduI GDGCHC 1 cut(s) 1070
SfaNI GCATC 6 cut(s) 697, 733, 745, 844, 1125, 1279
Sfr303I CCGCGG 2 cut(s) 357, 1369
SfuI TTCGAA 1 cut(s) 830
SgrBI CCGCGG 2 cut(s) 357, 1369
SinI GGWCC 1 cut(s) 1166
SmaI CCCGGG 2 cut(s) 205, 936
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SnaBI TACGTA 1 cut(s) 1045
SphI GCATGC 1 cut(s) 1241
Sse9I AATT 3 cut(s) 289, 304, 1006
SsiI CCGC 6 cut(s) 297, 354, 356, 554, 1366, 1368
SspMI CTAG 4 cut(s) 221, 410, 1076, 1314
StyD4I CCNGG 5 cut(s) 202, 203, 933, 934, 1168
TaaI ACNGT 5 cut(s) 542, 647, 887, 1460, 1486
TaiI ACGT 5 cut(s) 432, 764, 1047, 1391, 1503
TaqI TCGA 2 cut(s) 184, 830
TasI AATT 3 cut(s) 289, 304, 1006
TatI WGTACW 2 cut(s) 950, 1106
TauI GCSGC 1 cut(s) 1368
TfiI GAWTC 4 cut(s) 454, 502, 652, 815
Tru1I TTAA 5 cut(s) 312, 537, 909, 1020, 1194
Tru9I TTAA 5 cut(s) 312, 537, 909, 1020, 1194
TscAI CASTG 2 cut(s) 235, 421
TseI GCWGC 4 cut(s) 299, 398, 437, 1145
TspDTI ATGAA 5 cut(s) 78, 96, 422, 990, 1230
TspGWI ACGGA 3 cut(s) 555, 645, 1456
TspMI CCCGGG 2 cut(s) 203, 934
TspRI CASTG 2 cut(s) 235, 421
Van91I CCANNNNNTGG 1 cut(s) 1340
VpaK11BI GGWCC 1 cut(s) 1166
XagI CCTNNNNNAGG 1 cut(s) 831
XceI RCATGY 3 cut(s) 905, 1241, 1350
XmaI CCCGGG 2 cut(s) 203, 934
XspI CTAG 4 cut(s) 221, 410, 1076, 1314
ZraI GACGTC 1 cut(s) 1389
ZrmI AGTACT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.