Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011672

Physical Location & Seq

Genomic Coordinates Reverse (-)

1203960 .. 1208517

Gene Structure 4558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G016900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGGTTTTCTGGGTAGTAAAGCTACGGCTGGGCGGCTTCTGCTTCTACTTATAGCAGTTTCAGCTGCTACAGCTGATGAAGATGTATTTATTGGCGTGAACATAGGAACAGATCTGTCAGACATGCCACACCCAACACAAGTAGTAGCCCTACTAAAAGCTCAGCAAATTCGACATGTCCGGTTATATGACGCTGACCGTGCCATGCTAGTTGCACTTGCAAATACTGGCATTCAAGTTATGATTTCTGTTCCTAATGAACAGATCCTTGGAATTGGTCAATCTAATTCCACTGCAGCCAATTGGGTATCTCAGAATGTGGTAGCACATTACCCAGCCACAAACATCACAGCCATAGCTGTTGGGTCAGACGTTCTTACCACCCTCCCAAATGCTGCAAAAATTCTTGTCAATGCTCTCAAGTACATTCAATCAGCCCTTGTGGCATCCAATCTTGACCGCCAAATCAAAGTTTCAACTCCTCTTTCTTCCTCCATTATCCTTGATTCCTTCCCACCTTCCCAAGCCTTCTTTAACCGTTCATTGAATCCAGTTTTGGTCCCCATGCTTACTTTCTTGCAGTCCACAGGATCGTTTCTCATGCTAAATATATACCCATACTATGATTACATGCAATCAAATGGTGTCATTCCATTAGATTATTCACTCTTCAAGTCCCTCCCTCCAAACAAAGAAGCTGTTGATTCCAATACGCTTCTTCATTACACTAATGTTTTTGATGCTGTGGTTGATGCAGCATATTATGCCATGGCTTTTCTTAACTTCACTAACGTTCCAATAATAGTGACAGAATCAGGCTGGCCTTCCAAGGGTGATTCTAATGAGCCAGATGCAACATTAGAAAATGCCAACACATACAACAGCAATTTAATAAGGCATGTCCTGAATAAAACTGGAACTCCCAAACATCCTGGACTTGCTGTTAGTACTTTCATTTATGAACTCTATAATGAGGATATGAAACCTGGACCCATCTCAGAGAAGAACTGGGGATTGTTTGATGCAAATGGGACACCTATCTACATTTTGCGTTTGACAGGATCAGGAGCAGTATTATCAAATGATACTACAAACCAAACTTTCTGTATTACAAAGGATGGCGCTGATCCAAAGATGCTTCAGGCTGCACTAGATTGGGCTTGTGGACCTGGCAAGGTGGATTGCTCAGCTTTATTGCAGGGAGAACCATGCTACGAACCTGATAACGTGATTGCACATGCAACATATGCGTTTGATACTTACTATCATAAGATGGGGAAGACTCCGGCGGCATGCGACTTCAATGGAGTGGCTGCAATTACCACAACAGATCCAAGCCACGGATCCTGCATATTTCCTGGAAGTCTCGGCAAGAATGGCACCTTGGTAAATATCACAGCTCCATCATTGAATTCCACAAGTGTAGATTCTTCGGCCTACAACCTTCACAGCAATGCTTTTACTAGCATTGTACTGATAATTGAAATTTTCATCAGCGTTGCAGTTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

505

Amino Acids

54.11

Weight (kDa)

5.04

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66250
fragaria_vesca	FvH4_1g30380 FvH4_1g30380 FvH4_1g30380 FvH4_1g30380 FvH4_1g30380
malus_domestica	MD15G1319500.v1.1
prunus_persica	Prupe.3G016900_v2.0.a1
pyrus_communis	pycom15g28090
rosa_chinensis	RchiOBHm_Chr3g0490581
rosa_multiflora	Rmu_sc0003862.1_g000003
rosa_roxburghii	Rroxscaffold_6G00393400
rosa_rugosa	Rorug03G0244100 Rorug03G0244200
rosa_samantha	Rh3AG293800 Rh3BG330100 Rh3CG327500 Rh3DG326800
rosa_wichuraiana	Rw3G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1379
AciI	CCGC	3 cut(s)	34, 460, 1289
AclI	AACGTT	1 cut(s)	792
AclWI	GGATC	7 cut(s)	259, 598, 1069, 1121, 1325, 1338, 1351
AcsI	RAATTY	4 cut(s)	168, 402, 1411, 1485
AcuI	CTGAAG	1 cut(s)	1124
AfaI	GTAC	3 cut(s)	425, 949, 1473
AfiI	CCNNNNNNNGG	2 cut(s)	830, 1340
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	8 cut(s)	236, 431, 477, 547, 673, 1303, 1411, 1484
AjnI	CCWGG	4 cut(s)	931, 985, 1168, 1357
AjuI	GAANNNNNNNTTGG	6 cut(s)	252, 284, 539, 571, 1367, 1399
AluBI	AGCT	8 cut(s)	23, 65, 74, 161, 359, 698, 1190, 1400
AluI	AGCT	8 cut(s)	23, 65, 74, 161, 359, 698, 1190, 1400
Alw26I	GTCTC	1 cut(s)	1370
AlwI	GGATC	7 cut(s)	259, 598, 1069, 1121, 1325, 1338, 1351
AoxI	GGCC	2 cut(s)	821, 1434
ApeKI	GCWGC	6 cut(s)	65, 296, 395, 755, 1145, 1313
ApoI	RAATTY	4 cut(s)	168, 402, 1411, 1485
AspLEI	GCGC	1 cut(s)	1124
AspS9I	GGNCC	3 cut(s)	559, 989, 1166
AsuHPI	GGTGA	1 cut(s)	845
AvaII	GGWCC	3 cut(s)	559, 989, 1166
BamHI	GGATCC	1 cut(s)	1343
BanI	GGYRCC	1 cut(s)	1379
BbsI	GAAGAC	1 cut(s)	1286
BbvI	GCAGC	6 cut(s)	52, 308, 382, 767, 1132, 1300
BccI	CCATC	4 cut(s)	1001, 1112, 1267, 1411
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	4 cut(s)	933, 987, 1170, 1359
BcoDI	GTCTC	1 cut(s)	1370
BfaI	CTAG	3 cut(s)	209, 1151, 1464
BfmI	CTRYAG	2 cut(s)	69, 294
BfoI	RGCGCY	1 cut(s)	1125
BglI	GCCNNNNNGGC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	8 cut(s)	35, 66, 297, 396, 756, 1146, 1290, 1314
BlpI	GCTNAGC	2 cut(s)	162, 1186
BlsI	GCNGC	8 cut(s)	36, 67, 298, 397, 757, 1147, 1291, 1315
BmcAI	AGTACT	1 cut(s)	949
Bme1390I	CCNGG	4 cut(s)	933, 987, 1170, 1359
Bme18I	GGWCC	3 cut(s)	559, 989, 1166
BmgT120I	GGNCC	3 cut(s)	559, 989, 1166
BmiI	GGNNCC	4 cut(s)	561, 991, 1345, 1381
BmrFI	CCNGG	4 cut(s)	933, 987, 1170, 1359
BmrI	ACTGGG	1 cut(s)	1018
BmsI	GCATC	6 cut(s)	455, 730, 742, 841, 1012, 1125
BmuI	ACTGGG	1 cut(s)	1018
BpiI	GAAGAC	1 cut(s)	1286
Bpu1102I	GCTNAGC	2 cut(s)	162, 1186
BpuEI	CTTGAG	1 cut(s)	404
BsaJI	CCNNGG	5 cut(s)	268, 768, 828, 1339, 1383
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	904, 934
Bsc4I	CCNNNNNNNGG	2 cut(s)	830, 1340
Bse1I	ACTGG	4 cut(s)	232, 551, 919, 1013
Bse3DI	GCAATG	1 cut(s)	1459
BseBI	CCWGG	4 cut(s)	933, 987, 1170, 1359
BseDI	CCNNGG	5 cut(s)	268, 768, 828, 1339, 1383
BseGI	GGATG	3 cut(s)	446, 928, 1123
BseLI	CCNNNNNNNGG	2 cut(s)	830, 1340
BseMI	GCAATG	1 cut(s)	1459
BseMII	CTCAG	4 cut(s)	176, 326, 1011, 1200
BseNI	ACTGG	4 cut(s)	232, 551, 919, 1013
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	6 cut(s)	52, 308, 382, 767, 1132, 1300
BseYI	CCCAGC	2 cut(s)	29, 334
BsgI	GTGCAG	1 cut(s)	1131
BshFI	GGCC	2 cut(s)	823, 1436
BshNI	GGYRCC	1 cut(s)	1379
BsiSI	CCGG	2 cut(s)	181, 1286
BslFI	GGGAC	3 cut(s)	545, 661, 1045
BslI	CCNNNNNNNGG	2 cut(s)	830, 1340
BsmAI	GTCTC	1 cut(s)	1370
BsmFI	GGGAC	3 cut(s)	545, 661, 1045
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	823, 1436
Bsp143I	GATC	7 cut(s)	112, 264, 590, 1061, 1126, 1330, 1343
Bsp1720I	GCTNAGC	2 cut(s)	162, 1186
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	3 cut(s)	34, 460, 1289
BspANI	GGCC	2 cut(s)	823, 1436
BspCNI	CTCAG	4 cut(s)	175, 325, 1010, 1199
BspLI	GGNNCC	4 cut(s)	561, 991, 1345, 1381
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	7 cut(s)	259, 598, 1069, 1121, 1325, 1338, 1351
BspT107I	GGYRCC	1 cut(s)	1379
BsrDI	GCAATG	1 cut(s)	1459
BsrI	ACTGG	4 cut(s)	232, 551, 919, 1013
BssECI	CCNNGG	5 cut(s)	268, 768, 828, 1339, 1383
BssMI	GATC	7 cut(s)	112, 264, 590, 1061, 1126, 1330, 1343
BssT1I	CCWWGG	4 cut(s)	268, 768, 828, 1383
Bst2UI	CCWGG	4 cut(s)	933, 987, 1170, 1359
Bst4CI	ACNGT	2 cut(s)	200, 539
Bst6I	CTCTTC	1 cut(s)	674
BstAPI	GCANNNNNTGC	2 cut(s)	764, 1247
BstC8I	GCNNGC	2 cut(s)	821, 1294
BstDEI	CTNAG	4 cut(s)	162, 312, 997, 1186
BstDSI	CCRYGG	2 cut(s)	768, 1339
BstF5I	GGATG	3 cut(s)	446, 928, 1123
BstH2I	RGCGCY	1 cut(s)	1125
BstHHI	GCGC	1 cut(s)	1124
BstKTI	GATC	7 cut(s)	115, 267, 593, 1064, 1129, 1333, 1346
BstMAI	GTCTC	1 cut(s)	1370
BstMBI	GATC	7 cut(s)	112, 264, 590, 1061, 1126, 1330, 1343
BstMWI	GCNNNNNNNGC	8 cut(s)	40, 62, 71, 200, 443, 764, 1247, 1377
BstNI	CCWGG	4 cut(s)	933, 987, 1170, 1359
BstNSI	RCATGY	6 cut(s)	127, 179, 634, 902, 1241, 1296
BstSCI	CCNGG	4 cut(s)	931, 985, 1168, 1357
BstSFI	CTRYAG	2 cut(s)	69, 294
BstV1I	GCAGC	6 cut(s)	52, 308, 382, 767, 1132, 1300
BstV2I	GAAGAC	1 cut(s)	1286
BstX2I	RGATCY	4 cut(s)	112, 264, 1330, 1343
BstYI	RGATCY	4 cut(s)	112, 264, 1330, 1343
BsuRI	GGCC	2 cut(s)	823, 1436
BtgI	CCRYGG	2 cut(s)	768, 1339
BtsCI	GGATG	3 cut(s)	446, 928, 1123
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	821, 1294
CfoI	GCGC	1 cut(s)	1124
Cfr13I	GGNCC	3 cut(s)	559, 989, 1166
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	424, 948, 1472
CviQI	GTAC	3 cut(s)	424, 948, 1472
DdeI	CTNAG	4 cut(s)	162, 312, 997, 1186
DpnI	GATC	7 cut(s)	114, 266, 592, 1063, 1128, 1332, 1345
DpnII	GATC	7 cut(s)	112, 264, 590, 1061, 1126, 1330, 1343
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	4 cut(s)	268, 768, 828, 1383
Eco47I	GGWCC	3 cut(s)	559, 989, 1166
Eco57I	CTGAAG	1 cut(s)	1124
EcoRI	GAATTC	1 cut(s)	1411
EcoRII	CCWGG	4 cut(s)	931, 985, 1168, 1357
EcoT14I	CCWWGG	4 cut(s)	268, 768, 828, 1383
ErhI	CCWWGG	4 cut(s)	268, 768, 828, 1383
FaqI	GGGAC	3 cut(s)	545, 661, 1045
FauNDI	CATATG	1 cut(s)	1246
Fnu4HI	GCNGC	8 cut(s)	35, 66, 297, 396, 756, 1146, 1290, 1314
FokI	GGATG	3 cut(s)	433, 915, 1130
Fsp4HI	GCNGC	8 cut(s)	35, 66, 297, 396, 756, 1146, 1290, 1314
FspBI	CTAG	3 cut(s)	209, 1151, 1464
GlaI	GCGC	1 cut(s)	1123
GluI	GCNGC	8 cut(s)	35, 66, 297, 396, 756, 1146, 1290, 1314
GsaI	CCCAGC	2 cut(s)	33, 338
HaeII	RGCGCY	1 cut(s)	1125
HaeIII	GGCC	2 cut(s)	823, 1436
HapII	CCGG	2 cut(s)	181, 1286
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	1124
Hin6I	GCGC	1 cut(s)	1122
HinP1I	GCGC	1 cut(s)	1122
HinfI	GANTC	7 cut(s)	506, 547, 704, 812, 836, 1282, 1427
HpaII	CCGG	2 cut(s)	181, 1286
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	3 cut(s)	100, 585, 1166
Hpy188I	TCNGA	4 cut(s)	121, 315, 370, 1000
Hpy188III	TCNNGA	3 cut(s)	455, 904, 1065
Hpy8I	GTNNAC	3 cut(s)	100, 585, 1166
HpyAV	CCTTC	5 cut(s)	520, 528, 538, 834, 1454
HpyCH4III	ACNGT	2 cut(s)	200, 539
HpyCH4IV	ACGT	3 cut(s)	372, 792, 1227
HpyF10VI	GCNNNNNNNGC	8 cut(s)	40, 62, 71, 200, 443, 764, 1247, 1377
HpyF3I	CTNAG	4 cut(s)	162, 312, 997, 1186
HpySE526I	ACGT	3 cut(s)	372, 792, 1227
HspAI	GCGC	1 cut(s)	1122
Kzo9I	GATC	7 cut(s)	112, 264, 590, 1061, 1126, 1330, 1343
LmnI	GCTCC	2 cut(s)	1067, 1405
Lsp1109I	GCAGC	6 cut(s)	52, 308, 382, 767, 1132, 1300
LweI	GCATC	6 cut(s)	455, 730, 742, 841, 1012, 1125
MaeI	CTAG	3 cut(s)	209, 1151, 1464
MaeII	ACGT	3 cut(s)	372, 792, 1227
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	7 cut(s)	114, 266, 592, 1063, 1128, 1332, 1345
MboI	GATC	7 cut(s)	112, 264, 590, 1061, 1126, 1330, 1343
MboII	GAAGA	7 cut(s)	92, 480, 661, 710, 1015, 1291, 1422
MfeI	CAATTG	1 cut(s)	301
MflI	RGATCY	4 cut(s)	112, 264, 1330, 1343
MlyI	GAGTC	1 cut(s)	1276
MnlI	CCTC	6 cut(s)	395, 492, 502, 689, 693, 967
MseI	TTAA	3 cut(s)	534, 780, 890
MslI	CAYNNNNRTG	1 cut(s)	1452
MspA1I	CMGCKG	2 cut(s)	65, 74
MspI	CCGG	2 cut(s)	181, 1286
MspR9I	CCNGG	4 cut(s)	933, 987, 1170, 1359
MunI	CAATTG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	4 cut(s)	933, 987, 1170, 1359
MwoI	GCNNNNNNNGC	8 cut(s)	40, 62, 71, 200, 443, 764, 1247, 1377
NcoI	CCATGG	1 cut(s)	768
NdeI	CATATG	1 cut(s)	1246
NdeII	GATC	7 cut(s)	112, 264, 590, 1061, 1126, 1330, 1343
NlaIV	GGNNCC	4 cut(s)	561, 991, 1345, 1381
NmeAIII	GCCGAG	1 cut(s)	1347
NmuCI	GTSAC	1 cut(s)	805
NspI	RCATGY	6 cut(s)	127, 179, 634, 902, 1241, 1296
PaeI	GCATGC	1 cut(s)	1296
PciI	ACATGT	1 cut(s)	175
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	6 cut(s)	506, 547, 704, 812, 836, 1427
PfoI	TCCNGGA	2 cut(s)	931, 1357
PkrI	GCNGC	8 cut(s)	36, 67, 298, 397, 757, 1147, 1291, 1315
PleI	GAGTC	1 cut(s)	1276
PpsI	GAGTC	1 cut(s)	1276
PscI	ACATGT	1 cut(s)	175
Psp1406I	AACGTT	1 cut(s)	792
Psp6I	CCWGG	4 cut(s)	931, 985, 1168, 1357
PspFI	CCCAGC	2 cut(s)	29, 334
PspGI	CCWGG	4 cut(s)	931, 985, 1168, 1357
PspN4I	GGNNCC	4 cut(s)	561, 991, 1345, 1381
PspPI	GGNCC	3 cut(s)	559, 989, 1166
PstI	CTGCAG	1 cut(s)	298
PsuI	RGATCY	4 cut(s)	112, 264, 1330, 1343
PvuII	CAGCTG	2 cut(s)	65, 74
RsaI	GTAC	3 cut(s)	425, 949, 1473
RsaNI	GTAC	3 cut(s)	424, 948, 1472
RseI	CAYNNNNRTG	1 cut(s)	1452
SaqAI	TTAA	3 cut(s)	534, 780, 890
SatI	GCNGC	8 cut(s)	35, 66, 297, 396, 756, 1146, 1290, 1314
Sau3AI	GATC	7 cut(s)	112, 264, 590, 1061, 1126, 1330, 1343
Sau96I	GGNCC	3 cut(s)	559, 989, 1166
ScaI	AGTACT	1 cut(s)	949
SchI	GAGTC	1 cut(s)	1276
ScrFI	CCNGG	4 cut(s)	933, 987, 1170, 1359
SfaNI	GCATC	6 cut(s)	455, 730, 742, 841, 1012, 1125
SfcI	CTRYAG	2 cut(s)	69, 294
SinI	GGWCC	3 cut(s)	559, 989, 1166
SmiMI	CAYNNNNRTG	1 cut(s)	1452
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	1296
SsiI	CCGC	3 cut(s)	34, 460, 1289
SspMI	CTAG	3 cut(s)	209, 1151, 1464
StyD4I	CCNGG	4 cut(s)	931, 985, 1168, 1357
StyI	CCWWGG	4 cut(s)	268, 768, 828, 1383
TaaI	ACNGT	2 cut(s)	200, 539
TaiI	ACGT	3 cut(s)	375, 795, 1230
TaqI	TCGA	1 cut(s)	172
TatI	WGTACW	3 cut(s)	423, 947, 1471
TauI	GCSGC	2 cut(s)	37, 1292
TfiI	GAWTC	6 cut(s)	506, 547, 704, 812, 836, 1427
Tru1I	TTAA	3 cut(s)	534, 780, 890
Tru9I	TTAA	3 cut(s)	534, 780, 890
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	6 cut(s)	65, 296, 395, 755, 1145, 1313
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	8 cut(s)	93, 273, 531, 710, 943, 975, 995, 1480
TspGWI	ACGGA	1 cut(s)	1356
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	3 cut(s)	559, 989, 1166
XapI	RAATTY	4 cut(s)	168, 402, 1411, 1485
XceI	RCATGY	6 cut(s)	127, 179, 634, 902, 1241, 1296
XspI	CTAG	3 cut(s)	209, 1151, 1464
ZrmI	AGTACT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.