Rh3BG330100

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
34492530 .. 34496346
3817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG330100.1

Sequence Viewer

Length: 1638 bp
ATGACCAAGATTCTCTTTAGACTGAAGCATCCAATGATCCAATTCTCTTTAGGTCCACTACTAATTTGGAGTTTGGATAACCATGATGCTTCTTCCTCAATCAAATCCTTCCATTCATATTCATGTGTTTGTTACTTGAAACTTACAATTGGTTTTATGTTTGGAATATATAAAAGTAACAATCACTGTGAATTCATTCTTGCAGATGTATTTATTGGTGTGAATATAGGAACATCCCTCTCTGAAATGCCACACCCAACTCAAGTAGTAGCACTTTTAAAAGCCCAGCAAATTCGACATGTCCGGTTATATGATGCAGATCGTGCAATGCTTGTGGCACTTGCAAATACAGGCATAAAAATCATTATTTCTGTGCCTAATGATCAGATCCTTGGAATTGGTCAATCTAATTCCACTGCAGCTAATTGGGTATCCCAGAATGTAGTAGCACATTACCCAGCTACAAACATCACAGCCATATCTGTTGGCTCAGAGGTCCTTACTACCCTCCCAAATGCTGCAAAAATCCTCGTCAGTGCACTCAAGTACATTCACTCGGCCCTTGTGGCATCCAATCTTGACAGCCAAATCAAAGTTTCTACTCCTCTTTCTTCCTCTATAATCCTTGATTCATTCCCACCTTCCCAAGCCTTCTTTAACCGCTCACTGAATCCAGTTTTGGTCCCCATGCTTAGTTTCTTGCAGTCCACGGGCTCGTTTCTGATGCTTAATGTATATCCATACTATGACTACATGCAATCAAATGGTGTTATTGCATTGGATTATGCACTGCTCAACCCTCTCCAGGCAAACAAAGAAGCTGTTGATTCCAATACGCTTCTCCATTATTCTAATGTTTTTGATGCTGTGGTTGATGCAGCATATTATGCCATGGCTTTTCTTAACTTCACCAATGTTCCAGTAGTAGTGACAGAATCAGGCTGGCCCTCAAAAGGTGATTCTAATGAGCCAGACGCAACATTAGAAAATGCGAACACTTACAACAGCAATTTAATAAGGCACGTGTTGAACAAGACTGGAACTCCCAAACATCCTGGACTTGCTGTTAGTACTTTCATTTATGAACTCTATAATGAGGATACAAAACCTGGGCCTGTCTCAGAGAAGAACTGGGGATTGTTTGATGCAAATGGAACACCTATCTACATATTACGGTTGACGGGATCAGGAGCAGTATTAGCAAATGATACTACAAATCAAACTTTCTGTACAGTAAAGGATGGCACTGATACAAAGATGCTTCAGGCTGCACTAGATTGGGCTTGTGGACCTGGCAAGGTGGATTGCTCACCATTATTGCAGGGAGAACCCTGCTACGAACCAGATAATGTGATTTCACACGCAACGTATGCGTTTGACACTTATTATCATCAGATGGGGAAGACGCCTGCAGCATGTGACTTCAATGGAGTGGCTGCAATCACCACTACCGATCCAAGCCATGGTTCCTGTATATTTCCAGGAAGTCTTGGCAAGAATGGAACCTTGTTCAACATCACAGCTCCATCTTTGAATTCCACAAGTGCAGATTCTTCTTGTGCTTACAACTTTCACAGCAATGCTTTTGCAAGCATAGTACTCATTCATGTTCTCATCAGCTGTGCAGTTTTCTTGTAG

Protein Analysis

545

Amino Acids

59.02

Weight (kDa)

5.76

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 72 - 391 2.5e-78 Glycosyl hydrolases family 17
X8 PF07983 409 - 479 1.9e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011672)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1463
AccBSI CCGCTC 1 cut(s) 663
AciI CCGC 1 cut(s) 661
AclWI GGATC 4 cut(s) 31, 382, 1192, 1448
AcsI RAATTY 3 cut(s) 191, 291, 1534
AcuI CTGAAG 2 cut(s) 44, 1247
AcvI CACGTG 1 cut(s) 1024
AcyI GRCGYC 1 cut(s) 1406
AfaI GTAC 4 cut(s) 548, 1072, 1231, 1599
AfiI CCNNNNNNNGG 3 cut(s) 805, 953, 1463
AflIII ACRYGT 2 cut(s) 298, 1023
AgsI TTSAA 5 cut(s) 139, 1030, 1426, 1513, 1534
AjnI CCWGG 5 cut(s) 804, 1054, 1108, 1291, 1480
AjuI GAANNNNNNNTTGG 4 cut(s) 662, 694, 1450, 1482
AluBI AGCT 5 cut(s) 422, 461, 821, 1523, 1620
AluI AGCT 5 cut(s) 422, 461, 821, 1523, 1620
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 1123
Alw44I GTGCAC 1 cut(s) 537
AlwI GGATC 4 cut(s) 31, 382, 1192, 1448
AoxI GGCC 3 cut(s) 558, 944, 1112
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 6 cut(s) 419, 518, 878, 1268, 1412, 1436
ApoI RAATTY 3 cut(s) 191, 291, 1534
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 7 cut(s) 53, 496, 559, 682, 945, 1112, 1289
AsuHPI GGTGA 4 cut(s) 901, 968, 1302, 1435
AvaII GGWCC 4 cut(s) 53, 496, 682, 1289
BaeGI GKGCMC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 716
BbrPI CACGTG 1 cut(s) 1024
BbsI GAAGAC 1 cut(s) 1409
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 6 cut(s) 431, 505, 890, 1255, 1423, 1424
BccI CCATC 3 cut(s) 1235, 1390, 1534
BciT130I CCWGG 5 cut(s) 806, 1056, 1110, 1293, 1482
BciVI GTATCC 2 cut(s) 442, 1093
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 1123
BfaI CTAG 1 cut(s) 1274
BfmI CTRYAG 2 cut(s) 417, 1410
BfuI GTATCC 2 cut(s) 442, 1093
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 6 cut(s) 420, 519, 879, 1269, 1413, 1437
BlsI GCNGC 6 cut(s) 421, 520, 880, 1270, 1414, 1438
BmcAI AGTACT 2 cut(s) 1072, 1599
Bme1390I CCNGG 5 cut(s) 806, 1056, 1110, 1293, 1482
Bme18I GGWCC 4 cut(s) 53, 496, 682, 1289
BmgT120I GGNCC 7 cut(s) 53, 496, 559, 682, 945, 1112, 1289
BmiI GGNNCC 3 cut(s) 684, 1468, 1504
BmrFI CCNGG 5 cut(s) 806, 1056, 1110, 1293, 1482
BmrI ACTGGG 1 cut(s) 1141
BmsI GCATC 9 cut(s) 37, 76, 304, 578, 714, 853, 865, 1135, 1248
BmuI ACTGGG 1 cut(s) 1141
BpiI GAAGAC 1 cut(s) 1409
BpmI CTGGAG 1 cut(s) 788
BpuEI CTTGAG 2 cut(s) 246, 527
BsaAI YACGTR 1 cut(s) 1024
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 1406
BsaJI CCNNGG 5 cut(s) 391, 708, 891, 1109, 1462
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 1027, 1057
Bsc4I CCNNNNNNNGG 3 cut(s) 805, 953, 1463
Bse1I ACTGG 4 cut(s) 674, 920, 1042, 1136
Bse3DI GCAATG 2 cut(s) 333, 1585
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 5 cut(s) 806, 1056, 1110, 1293, 1482
BseDI CCNNGG 5 cut(s) 391, 708, 891, 1109, 1462
BseGI GGATG 5 cut(s) 28, 233, 569, 1051, 1246
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 3 cut(s) 805, 953, 1463
BseMI GCAATG 2 cut(s) 333, 1585
BseMII CTCAG 2 cut(s) 504, 1134
BseNI ACTGG 4 cut(s) 674, 920, 1042, 1136
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 6 cut(s) 431, 505, 890, 1255, 1423, 1424
BseYI CCCAGC 2 cut(s) 285, 457
BsgI GTGCAG 2 cut(s) 1254, 1566
BshFI GGCC 3 cut(s) 560, 946, 1114
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 3 cut(s) 805, 953, 1463
BsmAI GTCTC 1 cut(s) 1123
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 3 cut(s) 560, 946, 1114
Bsp1286I GDGCHC 2 cut(s) 541, 716
Bsp1407I TGTACA 1 cut(s) 1229
Bsp143I GATC 6 cut(s) 36, 319, 382, 387, 1184, 1453
Bsp19I CCATGG 2 cut(s) 891, 1462
BspACI CCGC 1 cut(s) 661
BspANI GGCC 3 cut(s) 560, 946, 1114
BspCNI CTCAG 2 cut(s) 503, 1133
BspLI GGNNCC 3 cut(s) 684, 1468, 1504
BspMAI CTGCAG 2 cut(s) 421, 1414
BspPI GGATC 4 cut(s) 31, 382, 1192, 1448
BsrBI CCGCTC 1 cut(s) 663
BsrDI GCAATG 2 cut(s) 333, 1585
BsrGI TGTACA 1 cut(s) 1229
BsrI ACTGG 4 cut(s) 674, 920, 1042, 1136
BssECI CCNNGG 5 cut(s) 391, 708, 891, 1109, 1462
BssMI GATC 6 cut(s) 36, 319, 382, 387, 1184, 1453
BssNI GRCGYC 1 cut(s) 1406
BssT1I CCWWGG 3 cut(s) 391, 891, 1462
Bst2UI CCWGG 5 cut(s) 806, 1056, 1110, 1293, 1482
Bst4CI ACNGT 3 cut(s) 188, 1176, 1234
BstACI GRCGYC 1 cut(s) 1406
BstAPI GCANNNNNTGC 3 cut(s) 323, 887, 1370
BstAUI TGTACA 1 cut(s) 1229
BstBAI YACGTR 1 cut(s) 1024
BstC8I GCNNGC 3 cut(s) 944, 1410, 1591
BstDEI CTNAG 3 cut(s) 490, 692, 1120
BstDSI CCRYGG 3 cut(s) 708, 891, 1462
BstF5I GGATG 5 cut(s) 28, 233, 569, 1051, 1246
BstKTI GATC 6 cut(s) 39, 322, 385, 390, 1187, 1456
BstMAI GTCTC 1 cut(s) 1123
BstMBI GATC 6 cut(s) 36, 319, 382, 387, 1184, 1453
BstMWI GCNNNNNNNGC 5 cut(s) 323, 566, 887, 1199, 1370
BstNI CCWGG 5 cut(s) 806, 1056, 1110, 1293, 1482
BstNSI RCATGY 3 cut(s) 302, 757, 1419
BstSCI CCNGG 5 cut(s) 804, 1054, 1108, 1291, 1480
BstSFI CTRYAG 2 cut(s) 417, 1410
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 6 cut(s) 431, 505, 890, 1255, 1423, 1424
BstV2I GAAGAC 1 cut(s) 1409
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BsuI GTATCC 2 cut(s) 442, 1093
BsuRI GGCC 3 cut(s) 560, 946, 1114
BtgI CCRYGG 3 cut(s) 708, 891, 1462
BtsCI GGATG 5 cut(s) 28, 233, 569, 1051, 1246
BtsI GCAGTG 2 cut(s) 414, 788
BtsIMutI CAGTG 6 cut(s) 184, 414, 541, 665, 788, 1245
Cac8I GCNNGC 3 cut(s) 944, 1410, 1591
Cfr13I GGNCC 7 cut(s) 53, 496, 559, 682, 945, 1112, 1289
CseI GACGC 2 cut(s) 983, 1414
Csp6I GTAC 4 cut(s) 547, 1071, 1230, 1598
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 9 cut(s) 83, 123, 299, 688, 754, 892, 1416, 1463, 1607
CviQI GTAC 4 cut(s) 547, 1071, 1230, 1598
DdeI CTNAG 3 cut(s) 490, 692, 1120
DpnI GATC 6 cut(s) 38, 321, 384, 389, 1186, 1455
DpnII GATC 6 cut(s) 36, 319, 382, 387, 1184, 1453
DraI TTTAAA 1 cut(s) 279
Eco130I CCWWGG 3 cut(s) 391, 891, 1462
Eco24I GRGCYC 1 cut(s) 716
Eco47I GGWCC 4 cut(s) 53, 496, 682, 1289
Eco57I CTGAAG 2 cut(s) 44, 1247
Eco72I CACGTG 1 cut(s) 1024
EcoO109I RGGNCCY 1 cut(s) 496
EcoRI GAATTC 2 cut(s) 191, 1534
EcoRII CCWGG 5 cut(s) 804, 1054, 1108, 1291, 1480
EcoT14I CCWWGG 3 cut(s) 391, 891, 1462
EcoT38I GRGCYC 1 cut(s) 716
ErhI CCWWGG 3 cut(s) 391, 891, 1462
FaeI CATG 9 cut(s) 86, 126, 302, 691, 757, 895, 1419, 1466, 1610
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 668
FatI CATG 9 cut(s) 82, 122, 298, 687, 753, 891, 1415, 1462, 1606
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 6 cut(s) 420, 519, 879, 1269, 1413, 1437
FokI GGATG 5 cut(s) 15, 220, 556, 1038, 1253
FriOI GRGCYC 1 cut(s) 716
Fsp4HI GCNGC 6 cut(s) 420, 519, 879, 1269, 1413, 1437
FspBI CTAG 1 cut(s) 1274
GluI GCNGC 6 cut(s) 420, 519, 879, 1269, 1413, 1437
GsaI CCCAGC 2 cut(s) 289, 461
GsuI CTGGAG 1 cut(s) 788
HaeIII GGCC 3 cut(s) 560, 946, 1114
HapII CCGG 1 cut(s) 304
HgaI GACGC 2 cut(s) 983, 1414
Hin1I GRCGYC 1 cut(s) 1406
Hin1II CATG 9 cut(s) 86, 126, 302, 691, 757, 895, 1419, 1466, 1610
HincII GTYRAC 1 cut(s) 1179
HindII GTYRAC 1 cut(s) 1179
HinfI GANTC 7 cut(s) 10, 629, 670, 827, 935, 959, 1550
HpaII CCGG 1 cut(s) 304
HphI GGTGA 4 cut(s) 901, 968, 1302, 1435
Hpy166II GTNNAC 5 cut(s) 56, 539, 708, 1179, 1289
Hpy188I TCNGA 6 cut(s) 244, 387, 493, 723, 1123, 1395
Hpy188III TCNNGA 2 cut(s) 578, 1188
Hpy8I GTNNAC 5 cut(s) 56, 539, 708, 1179, 1289
HpyAV CCTTC 3 cut(s) 118, 651, 661
HpyCH4III ACNGT 3 cut(s) 188, 1176, 1234
HpyCH4IV ACGT 2 cut(s) 1023, 1367
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 566, 887, 1199, 1370
HpyF3I CTNAG 3 cut(s) 490, 692, 1120
HpySE526I ACGT 2 cut(s) 1023, 1367
Hsp92I GRCGYC 1 cut(s) 1406
Hsp92II CATG 9 cut(s) 86, 126, 302, 691, 757, 895, 1419, 1466, 1610
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 6 cut(s) 36, 319, 382, 387, 1184, 1453
LmnI GCTCC 2 cut(s) 1190, 1528
Lsp1109I GCAGC 6 cut(s) 431, 505, 890, 1255, 1423, 1424
LweI GCATC 9 cut(s) 37, 76, 304, 578, 714, 853, 865, 1135, 1248
MaeI CTAG 1 cut(s) 1274
MaeII ACGT 2 cut(s) 1023, 1367
MaeIII GTNAC 4 cut(s) 131, 176, 928, 1418
MalI GATC 6 cut(s) 38, 321, 384, 389, 1186, 1455
MbiI CCGCTC 1 cut(s) 663
MboI GATC 6 cut(s) 36, 319, 382, 387, 1184, 1453
MboII GAAGA 5 cut(s) 84, 603, 1138, 1414, 1545
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 2 cut(s) 541, 716
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 5 cut(s) 278, 657, 729, 903, 1013
MslI CAYNNNNRTG 2 cut(s) 121, 1578
MspA1I CMGCKG 1 cut(s) 1620
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 5 cut(s) 806, 1056, 1110, 1293, 1482
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 5 cut(s) 806, 1056, 1110, 1293, 1482
MwoI GCNNNNNNNGC 5 cut(s) 323, 566, 887, 1199, 1370
NcoI CCATGG 2 cut(s) 891, 1462
NdeII GATC 6 cut(s) 36, 319, 382, 387, 1184, 1453
NlaIII CATG 9 cut(s) 86, 126, 302, 691, 757, 895, 1419, 1466, 1610
NlaIV GGNNCC 3 cut(s) 684, 1468, 1504
NmeAIII GCCGAG 1 cut(s) 536
NmuCI GTSAC 2 cut(s) 928, 1418
NspI RCATGY 3 cut(s) 302, 757, 1419
PciI ACATGT 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 7 cut(s) 10, 629, 670, 827, 935, 959, 1550
PflMI CCANNNNNTGG 1 cut(s) 1463
PfoI TCCNGGA 2 cut(s) 1054, 1480
PkrI GCNGC 6 cut(s) 421, 520, 880, 1270, 1414, 1438
PmaCI CACGTG 1 cut(s) 1024
PmlI CACGTG 1 cut(s) 1024
Ppu21I YACGTR 1 cut(s) 1024
PpuMI RGGWCCY 1 cut(s) 496
PscI ACATGT 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 5 cut(s) 804, 1054, 1108, 1291, 1480
PspCI CACGTG 1 cut(s) 1024
PspFI CCCAGC 2 cut(s) 285, 457
PspGI CCWGG 5 cut(s) 804, 1054, 1108, 1291, 1480
PspN4I GGNNCC 3 cut(s) 684, 1468, 1504
PspPI GGNCC 7 cut(s) 53, 496, 559, 682, 945, 1112, 1289
PspPPI RGGWCCY 1 cut(s) 496
PstI CTGCAG 2 cut(s) 421, 1414
PsuI RGATCY 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 1620
RsaI GTAC 4 cut(s) 548, 1072, 1231, 1599
RsaNI GTAC 4 cut(s) 547, 1071, 1230, 1598
RseI CAYNNNNRTG 2 cut(s) 121, 1578
SaqAI TTAA 5 cut(s) 278, 657, 729, 903, 1013
SatI GCNGC 6 cut(s) 420, 519, 879, 1269, 1413, 1437
Sau3AI GATC 6 cut(s) 36, 319, 382, 387, 1184, 1453
Sau96I GGNCC 7 cut(s) 53, 496, 559, 682, 945, 1112, 1289
ScaI AGTACT 2 cut(s) 1072, 1599
ScrFI CCNGG 5 cut(s) 806, 1056, 1110, 1293, 1482
SduI GDGCHC 2 cut(s) 541, 716
SfaNI GCATC 9 cut(s) 37, 76, 304, 578, 714, 853, 865, 1135, 1248
SfcI CTRYAG 2 cut(s) 417, 1410
SinI GGWCC 4 cut(s) 53, 496, 682, 1289
SmiMI CAYNNNNRTG 2 cut(s) 121, 1578
SmlI CTYRAG 2 cut(s) 261, 542
SmoI CTYRAG 2 cut(s) 261, 542
SsiI CCGC 1 cut(s) 661
SspMI CTAG 1 cut(s) 1274
StyD4I CCNGG 5 cut(s) 804, 1054, 1108, 1291, 1480
StyI CCWWGG 3 cut(s) 391, 891, 1462
TaaI ACNGT 3 cut(s) 188, 1176, 1234
TaiI ACGT 2 cut(s) 1026, 1370
TaqI TCGA 1 cut(s) 295
TatI WGTACW 4 cut(s) 546, 1070, 1229, 1597
TfiI GAWTC 7 cut(s) 10, 629, 670, 827, 935, 959, 1550
Tru1I TTAA 5 cut(s) 278, 657, 729, 903, 1013
Tru9I TTAA 5 cut(s) 278, 657, 729, 903, 1013
TscAI CASTG 6 cut(s) 191, 421, 541, 672, 795, 1252
TseFI GTSAC 2 cut(s) 928, 1418
TseI GCWGC 6 cut(s) 419, 518, 878, 1268, 1412, 1436
Tsp45I GTSAC 2 cut(s) 928, 1418
TspDTI ATGAA 7 cut(s) 105, 111, 184, 621, 1066, 1098, 1595
TspRI CASTG 6 cut(s) 191, 421, 541, 672, 795, 1252
Van91I CCANNNNNTGG 1 cut(s) 1463
VneI GTGCAC 1 cut(s) 537
VpaK11BI GGWCC 4 cut(s) 53, 496, 682, 1289
XapI RAATTY 3 cut(s) 191, 291, 1534
XceI RCATGY 3 cut(s) 302, 757, 1419
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 1274
ZrmI AGTACT 2 cut(s) 1072, 1599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.