FvH4_1g30380

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
24081371 .. 24087364
5994 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30380.t1

Sequence Viewer

Length: 1515 bp
ATGGGTTTCTTGTTCGGTTCTGAATCTATGGCTCTAACGCTTCTGCTTTTACTTTTAGCTCTTTCAGTAGCTACTGCTGATGAAGATGTGTTTATTGGTGTGAATATTGGAACATCCCTCTCCGACATGCCACACCCAACTCAAGTAGTAGCACTTCTAAAAGCCCAGCAGATTCGACATGTTCGGTTATATGATGCAGATCGTGCCATGCTTGTGGCACTTGCAAATACAGGAATTCAAGTCATTATTTCTGTGCCTAATGACCAGATCCTTGGAATCGGTCAATCTAATTCCACTGCAGCTAATTGGGTATCCCAGAATGTAGTAGCACATTACCCAGCTACAAACATCACAGCTATATCTGTTGGTTCAGAAGTCCTTACTGCCGTTCCAAATACTGCAAAAATCCTCGTCAGTGCTCTCAAATACATTCACTCGGCCCTTGTGGCATCCAATCTTGACAGCCAAATCAAAGTCTCAACTCCTCTTTCTTCGTCCATTATCCTTGATTCGTTTCCACCTTCCCAAGCTTTCTTTAACCGCTCACTGAATCCAGTGTTGGTCCCTATGCTTAGTTTCTTGCAGTCCACAGGTTCGTTCCTGATGCTTAATGTGTACCCATACTATGACTACATGCAATCAAATGGTGTTATTGCATTGGATTATGCACTGCTCAACCCTCTCCAGGCAAACAAAGAAGCTGTTGATTCCAATACGCTTCTCCATTACTCCAATGTATTTGATGCTGTGGTTGATGCAGCATATTATGCCATGGCTTTTCTTAACTTCACCAATGTTCCAGTAGTCGTGACAGAATCAGGCTGGCCTTCAAAAGGTGATTCTAATGAGCCAGATGCTACATTAGAAAATGCCAACACTTACAACAGCAATTTAATAAGGCACGTGTTGAACAAAACTGGAACTCCAAAACGTCCTGGACTTGCAGTTAGTACTTTCATTTATGAACTCTATAATGAGGATACAAAACCTGGGCCTGTCTCAGAGAAGAACTGGGGATTGTTTGATGCAAATGGAACACCTATCTACATATTACGGTTGACGGGATCAGGGGCAGTATTAGCGAATGATACTACAAATCAAACTTTCTGTACAGCCAAGGATGGCACTGATACAAAGATGCTTCAGGCTGCACTAGATTGGGCTTGTGGACCTGGCAAGGTGGATTGCTCACCATTATTGCAGGGAGAACCATGCTACGAACCAGATAATGTGATTTCGCACGCAACATATGCATTCGACACTTATTATCATCAGATGGGGAAGACATCTGCATCATGTGACTTCAATGGAGTGGCTGCAATCACCACTACCGATCCAAGCCATGGCTCCTGTGTATTTCCCGGCAGTCTTGGCAAGAATGGAACCTTGGTCAACATCACAGCTCCGTCTTTGAATTCCACAAGTGGAGATTCTTCTGCATACAACTTTCAGAGCAATGCTTTCACAAGCATAGTACTCATTCATGTTCTCATCAGCTGTGCAGTTTTCTTGTAG

Protein Analysis

505

Amino Acids

53.89

Weight (kDa)

4.81

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 32 - 351 1.7e-79 Glycosyl hydrolases family 17
X8 PF07983 369 - 439 2e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011672)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1343
AccBSI CCGCTC 1 cut(s) 543
AciI CCGC 1 cut(s) 541
AclWI GGATC 3 cut(s) 262, 1072, 1328
AcsI RAATTY 2 cut(s) 234, 1414
AcuI CTGAAG 1 cut(s) 1127
AcvI CACGTG 1 cut(s) 904
AfaI GTAC 4 cut(s) 617, 952, 1111, 1476
AfiI CCNNNNNNNGG 3 cut(s) 685, 833, 1343
AflIII ACRYGT 2 cut(s) 178, 903
AgsI TTSAA 5 cut(s) 239, 831, 910, 1306, 1414
AjnI CCWGG 4 cut(s) 684, 934, 988, 1171
AjuI GAANNNNNNNTTGG 4 cut(s) 542, 574, 1370, 1402
AluBI AGCT 9 cut(s) 59, 71, 302, 341, 356, 530, 701, 1403, 1497
AluI AGCT 9 cut(s) 59, 71, 302, 341, 356, 530, 701, 1403, 1497
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 481, 1003
AlwI GGATC 3 cut(s) 262, 1072, 1328
AoxI GGCC 3 cut(s) 438, 824, 992
ApeKI GCWGC 4 cut(s) 299, 758, 1148, 1316
ApoI RAATTY 2 cut(s) 234, 1414
AspS9I GGNCC 4 cut(s) 439, 562, 992, 1169
AsuC2I CCSGG 1 cut(s) 1362
AsuHPI GGTGA 4 cut(s) 781, 848, 1182, 1315
AvaII GGWCC 2 cut(s) 562, 1169
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BbrPI CACGTG 1 cut(s) 904
BbsI GAAGAC 1 cut(s) 1289
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 4 cut(s) 311, 770, 1135, 1303
BccI CCATC 2 cut(s) 1115, 1270
BceAI ACGGC 1 cut(s) 371
BciT130I CCWGG 4 cut(s) 686, 936, 990, 1173
BciVI GTATCC 2 cut(s) 322, 973
BcnI CCSGG 1 cut(s) 1362
BcoDI GTCTC 2 cut(s) 481, 1003
BfaI CTAG 1 cut(s) 1154
BfmI CTRYAG 1 cut(s) 297
BfuI GTATCC 2 cut(s) 322, 973
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 4 cut(s) 300, 759, 1149, 1317
BlsI GCNGC 4 cut(s) 301, 760, 1150, 1318
BmcAI AGTACT 2 cut(s) 952, 1476
Bme1390I CCNGG 5 cut(s) 686, 936, 990, 1173, 1362
Bme18I GGWCC 2 cut(s) 562, 1169
BmgT120I GGNCC 4 cut(s) 439, 562, 992, 1169
BmiI GGNNCC 3 cut(s) 564, 1348, 1384
BmrFI CCNGG 5 cut(s) 686, 936, 990, 1173, 1362
BmrI ACTGGG 1 cut(s) 1021
BmsI GCATC 9 cut(s) 184, 458, 594, 733, 745, 844, 1015, 1128, 1301
BmuI ACTGGG 1 cut(s) 1021
BpiI GAAGAC 1 cut(s) 1289
BpmI CTGGAG 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 1362
BsaAI YACGTR 1 cut(s) 904
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 6 cut(s) 271, 771, 989, 1116, 1342, 1386
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 3 cut(s) 685, 833, 1343
Bse1I ACTGG 4 cut(s) 554, 800, 922, 1016
Bse3DI GCAATG 1 cut(s) 1462
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 4 cut(s) 686, 936, 990, 1173
BseDI CCNNGG 6 cut(s) 271, 771, 989, 1116, 1342, 1386
BseGI GGATG 3 cut(s) 113, 449, 1126
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 685, 833, 1343
BseMI GCAATG 1 cut(s) 1462
BseMII CTCAG 1 cut(s) 1014
BseNI ACTGG 4 cut(s) 554, 800, 922, 1016
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 4 cut(s) 311, 770, 1135, 1303
BseYI CCCAGC 2 cut(s) 165, 337
BsgI GTGCAG 1 cut(s) 1134
BshFI GGCC 3 cut(s) 440, 826, 994
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 1362
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 3 cut(s) 685, 833, 1343
BsmAI GTCTC 2 cut(s) 481, 1003
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 1253
BsnI GGCC 3 cut(s) 440, 826, 994
Bsp1286I GDGCHC 1 cut(s) 421
Bsp1407I TGTACA 1 cut(s) 1109
Bsp143I GATC 4 cut(s) 199, 267, 1064, 1333
Bsp19I CCATGG 2 cut(s) 771, 1342
BspACI CCGC 1 cut(s) 541
BspANI GGCC 3 cut(s) 440, 826, 994
BspCNI CTCAG 1 cut(s) 1013
BspLI GGNNCC 3 cut(s) 564, 1348, 1384
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 3 cut(s) 262, 1072, 1328
BsrBI CCGCTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 1462
BsrGI TGTACA 1 cut(s) 1109
BsrI ACTGG 4 cut(s) 554, 800, 922, 1016
BssECI CCNNGG 6 cut(s) 271, 771, 989, 1116, 1342, 1386
BssMI GATC 4 cut(s) 199, 267, 1064, 1333
BssT1I CCWWGG 5 cut(s) 271, 771, 1116, 1342, 1386
Bst2UI CCWGG 4 cut(s) 686, 936, 990, 1173
Bst4CI ACNGT 1 cut(s) 1056
BstAPI GCANNNNNTGC 3 cut(s) 203, 767, 1250
BstAUI TGTACA 1 cut(s) 1109
BstBAI YACGTR 1 cut(s) 904
BstC8I GCNNGC 2 cut(s) 824, 1242
BstDEI CTNAG 2 cut(s) 572, 1000
BstDSI CCRYGG 2 cut(s) 771, 1342
BstENI CCTNNNNNAGG 1 cut(s) 831
BstF5I GGATG 3 cut(s) 113, 449, 1126
BstKTI GATC 4 cut(s) 202, 270, 1067, 1336
BstMAI GTCTC 2 cut(s) 481, 1003
BstMBI GATC 4 cut(s) 199, 267, 1064, 1333
BstMWI GCNNNNNNNGC 6 cut(s) 203, 446, 767, 1079, 1250, 1371
BstNI CCWGG 4 cut(s) 686, 936, 990, 1173
BstNSI RCATGY 3 cut(s) 130, 182, 637
BstSCI CCNGG 5 cut(s) 684, 934, 988, 1171, 1360
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 4 cut(s) 311, 770, 1135, 1303
BstV2I GAAGAC 1 cut(s) 1289
BstX2I RGATCY 1 cut(s) 267
BstXI CCANNNNNNTGG 2 cut(s) 214, 272
BstYI RGATCY 1 cut(s) 267
BsuI GTATCC 2 cut(s) 322, 973
BsuRI GGCC 3 cut(s) 440, 826, 994
BtgI CCRYGG 2 cut(s) 771, 1342
BtsCI GGATG 3 cut(s) 113, 449, 1126
BtsI GCAGTG 2 cut(s) 294, 668
BtsIMutI CAGTG 6 cut(s) 294, 421, 545, 561, 668, 1125
Cac8I GCNNGC 2 cut(s) 824, 1242
Cfr13I GGNCC 4 cut(s) 439, 562, 992, 1169
Csp6I GTAC 4 cut(s) 616, 951, 1110, 1475
CviAII CATG 9 cut(s) 127, 179, 208, 634, 772, 1212, 1296, 1343, 1484
CviQI GTAC 4 cut(s) 616, 951, 1110, 1475
DdeI CTNAG 2 cut(s) 572, 1000
DpnI GATC 4 cut(s) 201, 269, 1066, 1335
DpnII GATC 4 cut(s) 199, 267, 1064, 1333
Eco130I CCWWGG 5 cut(s) 271, 771, 1116, 1342, 1386
Eco47I GGWCC 2 cut(s) 562, 1169
Eco57I CTGAAG 1 cut(s) 1127
Eco72I CACGTG 1 cut(s) 904
EcoNI CCTNNNNNAGG 1 cut(s) 831
EcoRI GAATTC 2 cut(s) 234, 1414
EcoRII CCWGG 4 cut(s) 684, 934, 988, 1171
EcoT14I CCWWGG 5 cut(s) 271, 771, 1116, 1342, 1386
EcoT22I ATGCAT 1 cut(s) 1255
ErhI CCWWGG 5 cut(s) 271, 771, 1116, 1342, 1386
FaeI CATG 9 cut(s) 130, 182, 211, 637, 775, 1215, 1299, 1346, 1487
FaqI GGGAC 1 cut(s) 548
FatI CATG 9 cut(s) 126, 178, 207, 633, 771, 1211, 1295, 1342, 1483
FauNDI CATATG 1 cut(s) 1249
Fnu4HI GCNGC 4 cut(s) 300, 759, 1149, 1317
FokI GGATG 3 cut(s) 100, 436, 1133
Fsp4HI GCNGC 4 cut(s) 300, 759, 1149, 1317
FspBI CTAG 1 cut(s) 1154
GluI GCNGC 4 cut(s) 300, 759, 1149, 1317
GsaI CCCAGC 2 cut(s) 169, 341
GsuI CTGGAG 1 cut(s) 668
HaeIII GGCC 3 cut(s) 440, 826, 994
HapII CCGG 1 cut(s) 1362
Hin1II CATG 9 cut(s) 130, 182, 211, 637, 775, 1215, 1299, 1346, 1487
HincII GTYRAC 2 cut(s) 1059, 1393
HindII GTYRAC 2 cut(s) 1059, 1393
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 9 cut(s) 23, 172, 276, 509, 550, 707, 815, 839, 1430
HpaII CCGG 1 cut(s) 1362
HphI GGTGA 4 cut(s) 781, 848, 1182, 1315
Hpy166II GTNNAC 5 cut(s) 588, 616, 1059, 1169, 1393
Hpy188I TCNGA 6 cut(s) 22, 124, 373, 1003, 1275, 1452
Hpy188III TCNNGA 3 cut(s) 458, 601, 808
Hpy8I GTNNAC 5 cut(s) 588, 616, 1059, 1169, 1393
HpyAV CCTTC 2 cut(s) 531, 837
HpyCH4III ACNGT 1 cut(s) 1056
HpyCH4IV ACGT 2 cut(s) 903, 931
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 446, 767, 1079, 1250, 1371
HpyF3I CTNAG 2 cut(s) 572, 1000
HpySE526I ACGT 2 cut(s) 903, 931
Hsp92II CATG 9 cut(s) 130, 182, 211, 637, 775, 1215, 1299, 1346, 1487
Kzo9I GATC 4 cut(s) 199, 267, 1064, 1333
LmnI GCTCC 2 cut(s) 1352, 1408
Lsp1109I GCAGC 4 cut(s) 311, 770, 1135, 1303
LweI GCATC 9 cut(s) 184, 458, 594, 733, 745, 844, 1015, 1128, 1301
MaeI CTAG 1 cut(s) 1154
MaeII ACGT 2 cut(s) 903, 931
MaeIII GTNAC 2 cut(s) 808, 1298
MalI GATC 4 cut(s) 201, 269, 1066, 1335
MbiI CCGCTC 1 cut(s) 543
MboI GATC 4 cut(s) 199, 267, 1064, 1333
MboII GAAGA 5 cut(s) 95, 483, 1018, 1294, 1425
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 5 cut(s) 234, 289, 304, 889, 1414
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 5 cut(s) 128, 419, 495, 690, 970
Mph1103I ATGCAT 1 cut(s) 1255
MseI TTAA 4 cut(s) 537, 609, 783, 893
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 1497
MspI CCGG 1 cut(s) 1362
MspR9I CCNGG 5 cut(s) 686, 936, 990, 1173, 1362
Mva1269I GAATGC 1 cut(s) 1253
MvaI CCWGG 4 cut(s) 686, 936, 990, 1173
MwoI GCNNNNNNNGC 6 cut(s) 203, 446, 767, 1079, 1250, 1371
NciI CCSGG 1 cut(s) 1362
NcoI CCATGG 2 cut(s) 771, 1342
NdeI CATATG 1 cut(s) 1249
NdeII GATC 4 cut(s) 199, 267, 1064, 1333
NlaIII CATG 9 cut(s) 130, 182, 211, 637, 775, 1215, 1299, 1346, 1487
NlaIV GGNNCC 3 cut(s) 564, 1348, 1384
NmeAIII GCCGAG 1 cut(s) 416
NmuCI GTSAC 2 cut(s) 808, 1298
NsiI ATGCAT 1 cut(s) 1255
NspI RCATGY 3 cut(s) 130, 182, 637
PciI ACATGT 1 cut(s) 178
PctI GAATGC 1 cut(s) 1253
PfeI GAWTC 9 cut(s) 23, 172, 276, 509, 550, 707, 815, 839, 1430
PflMI CCANNNNNTGG 1 cut(s) 1343
PfoI TCCNGGA 1 cut(s) 934
PkrI GCNGC 4 cut(s) 301, 760, 1150, 1318
PmaCI CACGTG 1 cut(s) 904
PmlI CACGTG 1 cut(s) 904
Ppu21I YACGTR 1 cut(s) 904
PscI ACATGT 1 cut(s) 178
Psp6I CCWGG 4 cut(s) 684, 934, 988, 1171
PspCI CACGTG 1 cut(s) 904
PspFI CCCAGC 2 cut(s) 165, 337
PspGI CCWGG 4 cut(s) 684, 934, 988, 1171
PspN4I GGNNCC 3 cut(s) 564, 1348, 1384
PspPI GGNCC 4 cut(s) 439, 562, 992, 1169
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 1497
RsaI GTAC 4 cut(s) 617, 952, 1111, 1476
RsaNI GTAC 4 cut(s) 616, 951, 1110, 1475
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 4 cut(s) 537, 609, 783, 893
SatI GCNGC 4 cut(s) 300, 759, 1149, 1317
Sau3AI GATC 4 cut(s) 199, 267, 1064, 1333
Sau96I GGNCC 4 cut(s) 439, 562, 992, 1169
ScaI AGTACT 2 cut(s) 952, 1476
ScrFI CCNGG 5 cut(s) 686, 936, 990, 1173, 1362
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 9 cut(s) 184, 458, 594, 733, 745, 844, 1015, 1128, 1301
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 562, 1169
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 5 cut(s) 234, 289, 304, 889, 1414
SsiI CCGC 1 cut(s) 541
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 1154
StyD4I CCNGG 5 cut(s) 684, 934, 988, 1171, 1360
StyI CCWWGG 5 cut(s) 271, 771, 1116, 1342, 1386
TaaI ACNGT 1 cut(s) 1056
TaiI ACGT 2 cut(s) 906, 934
TaqI TCGA 2 cut(s) 175, 1257
TaqII GACCGA 1 cut(s) 269
TasI AATT 5 cut(s) 234, 289, 304, 889, 1414
TatI WGTACW 3 cut(s) 950, 1109, 1474
TfiI GAWTC 9 cut(s) 23, 172, 276, 509, 550, 707, 815, 839, 1430
Tru1I TTAA 4 cut(s) 537, 609, 783, 893
Tru9I TTAA 4 cut(s) 537, 609, 783, 893
TscAI CASTG 6 cut(s) 301, 421, 552, 561, 675, 1132
TseFI GTSAC 2 cut(s) 808, 1298
TseI GCWGC 4 cut(s) 299, 758, 1148, 1316
Tsp45I GTSAC 2 cut(s) 808, 1298
TspDTI ATGAA 4 cut(s) 96, 946, 978, 1472
TspGWI ACGGA 1 cut(s) 1395
TspRI CASTG 6 cut(s) 301, 421, 552, 561, 675, 1132
Van91I CCANNNNNTGG 1 cut(s) 1343
VpaK11BI GGWCC 2 cut(s) 562, 1169
XagI CCTNNNNNAGG 1 cut(s) 831
XapI RAATTY 2 cut(s) 234, 1414
XceI RCATGY 3 cut(s) 130, 182, 637
XspI CTAG 1 cut(s) 1154
ZrmI AGTACT 2 cut(s) 952, 1476
Zsp2I ATGCAT 1 cut(s) 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.