AT1G67100

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016185
Physical Location & Seq
Forward (+)
25053673 .. 25054864
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67100.1

Sequence Viewer

Length: 702 bp
ATGCGTATGAGTTGTAACGGATGTCGAGTTCTACGAAAAGGCTGCAGTGAAAACTGTAGCATAAGACCTTGTCTTCAATGGATCAAATCCGCTGAATCTCAAGCCAACGCCACCGTCTTCCTCGCCAAGTTTTATGGCCGTGCGGGGCTCATGAACCTCCTCAACACCGGTCCTGACCACCTCCGTCCTGCGATATTTAGATCATTGTTGTACGAAGCATGCGGGAGGATTGTGAATCCGATATACGGATCCGTGGGGTTATTGTGGTCAGGAAACTGGCATCTTTGTCAAGCGGCCGTTGAGGCAGTAATGAGAGGCTCACCCGTGACTCCGATCGCATGCGACGCAGCGGTTACTGGTCAAGCACCTCCTTTTAACAACAAGCTTTGCGACATAAGACACGTGTCAAGCAGGGACGAGAACGTTAAGAGACGGAGCCGTGGTGCATGCAAGGAAGAGAGAAACGTGAGGTCTTTGAGTCATGAGTCGTCACTGAGTCACGAGTCACCGGTGTCTTCTGAGGAGACGACGACGGAGGAACCAAAGACTTGGATCGGGCTTGAGCTGACTTTGGGGTTGGAGCCTTTAGCACGTGGAAATCACGTGGTGGTACCGATGAAGAAAAGAAAGTTAGAGAGGTGTGGCACGTCTGAGGATGAGGACACGTGTAAGATTGAGCTTGGACTGGTGTGCAGTGAGTGA

Protein Analysis

233

Amino Acids

25.7

Weight (kDa)

8.42

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 102 3.9e-23 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67100 AT1G68510
fragaria_vesca FvH4_4g27380
malus_domestica MD16G1042900.v1.1
prunus_persica Prupe.1G311000_v2.0.a1
pyrus_communis pycom16g03700
rosa_chinensis RchiOBHm_Chr4g0435181
rosa_laevigata RLG00000006611
rosa_roxburghii Rroxscaffold_5G00376400
rosa_rugosa Rorug04G0282800
rosa_samantha Rh4AG338600 Rh4BG346700 Rh4CG361300 Rh4DG341100
rosa_wichuraiana Rw4G029530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 610
AciI CCGC 5 cut(s) 90, 143, 222, 293, 350
AclI AACGTT 1 cut(s) 423
AclWI GGATC 4 cut(s) 89, 243, 256, 560
AcoI YGGCCR 2 cut(s) 136, 294
AcvI CACGTG 4 cut(s) 403, 593, 604, 666
AdeI CACNNNGTG 1 cut(s) 607
AfaI GTAC 2 cut(s) 212, 612
AfiI CCNNNNNNNGG 1 cut(s) 245
AflIII ACRYGT 4 cut(s) 400, 402, 663, 665
AgeI ACCGGT 2 cut(s) 167, 508
AgsI TTSAA 1 cut(s) 77
AjiI CACGTC 1 cut(s) 648
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 3 cut(s) 385, 565, 679
AluI AGCT 3 cut(s) 385, 565, 679
Alw26I GTCTC 2 cut(s) 424, 518
AlwI GGATC 4 cut(s) 89, 243, 256, 560
AoxI GGCC 2 cut(s) 136, 294
ApeKI GCWGC 2 cut(s) 42, 347
AsiGI ACCGGT 2 cut(s) 167, 508
Asp718I GGTACC 1 cut(s) 610
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 312, 498
AvaII GGWCC 1 cut(s) 170
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 1 cut(s) 500
BbrPI CACGTG 4 cut(s) 403, 593, 604, 666
BbsI GAAGAC 3 cut(s) 65, 109, 507
BbvI GCAGC 2 cut(s) 29, 359
BceAI ACGGC 3 cut(s) 123, 281, 423
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BcoDI GTCTC 2 cut(s) 424, 518
BfmI CTRYAG 2 cut(s) 43, 55
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 3 cut(s) 43, 294, 348
BlsI GCNGC 3 cut(s) 44, 295, 349
Bme18I GGWCC 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 648
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 5 cut(s) 250, 437, 540, 582, 612
BmsI GCATC 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 403
BpiI GAAGAC 3 cut(s) 65, 109, 507
BpuEI CTTGAG 2 cut(s) 84, 581
BsaAI YACGTR 4 cut(s) 403, 593, 604, 666
BsaJI CCNNGG 2 cut(s) 252, 439
BsaWI WCCGGW 2 cut(s) 167, 508
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 2 cut(s) 167, 508
Bse1I ACTGG 3 cut(s) 281, 361, 690
BseDI CCNNGG 2 cut(s) 252, 439
BseGI GGATG 2 cut(s) 26, 661
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 3 cut(s) 485, 510, 642
BseNI ACTGG 3 cut(s) 281, 361, 690
BseRI GAGGAG 2 cut(s) 149, 536
BseX3I CGGCCG 1 cut(s) 294
BseXI GCAGC 2 cut(s) 29, 359
Bsh1285I CGRYCG 2 cut(s) 297, 336
BshFI GGCC 2 cut(s) 138, 296
BshNI GGYRCC 1 cut(s) 610
BshTI ACCGGT 2 cut(s) 167, 508
BsiEI CGRYCG 2 cut(s) 297, 336
BsiSI CCGG 2 cut(s) 168, 509
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 2 cut(s) 424, 518
BsmBI CGTCTC 2 cut(s) 424, 518
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 2 cut(s) 138, 296
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 5 cut(s) 81, 200, 248, 333, 552
BspACI CCGC 5 cut(s) 90, 143, 222, 293, 350
BspANI GGCC 2 cut(s) 138, 296
BspCNI CTCAG 3 cut(s) 486, 511, 643
BspHI TCATGA 2 cut(s) 150, 481
BspLI GGNNCC 5 cut(s) 250, 437, 540, 582, 612
BspMAI CTGCAG 1 cut(s) 47
BspPI GGATC 4 cut(s) 89, 243, 256, 560
BspT107I GGYRCC 1 cut(s) 610
BsrFI RCCGGY 2 cut(s) 167, 508
BsrI ACTGG 3 cut(s) 281, 361, 690
BssAI RCCGGY 2 cut(s) 167, 508
BssECI CCNNGG 2 cut(s) 252, 439
BssMI GATC 5 cut(s) 81, 200, 248, 333, 552
BssSI CACGAG 1 cut(s) 500
Bst2BI CACGAG 1 cut(s) 500
Bst4CI ACNGT 2 cut(s) 56, 115
Bst6I CTCTTC 1 cut(s) 450
BstBAI YACGTR 4 cut(s) 403, 593, 604, 666
BstC8I GCNNGC 3 cut(s) 220, 340, 448
BstDEI CTNAG 3 cut(s) 494, 519, 651
BstDSI CCRYGG 2 cut(s) 252, 439
BstF5I GGATG 2 cut(s) 26, 661
BstKTI GATC 5 cut(s) 84, 203, 251, 336, 555
BstMAI GTCTC 2 cut(s) 424, 518
BstMBI GATC 5 cut(s) 81, 200, 248, 333, 552
BstMCI CGRYCG 2 cut(s) 297, 336
BstMWI GCNNNNNNNGC 2 cut(s) 302, 344
BstNSI RCATGY 3 cut(s) 222, 342, 450
BstPAI GACNNNNGTC 1 cut(s) 403
BstSFI CTRYAG 2 cut(s) 43, 55
BstV1I GCAGC 2 cut(s) 29, 359
BstV2I GAAGAC 3 cut(s) 65, 109, 507
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 549
BstYI RGATCY 1 cut(s) 248
BstZI CGGCCG 1 cut(s) 294
BsuRI GGCC 2 cut(s) 138, 296
BtgI CCRYGG 2 cut(s) 252, 439
BtrI CACGTC 1 cut(s) 648
BtsCI GGATG 2 cut(s) 26, 661
BtsI GCAGTG 2 cut(s) 52, 700
BtsIMutI CAGTG 3 cut(s) 52, 491, 700
Cac8I GCNNGC 3 cut(s) 220, 340, 448
CciI TCATGA 2 cut(s) 150, 481
Cfr10I RCCGGY 2 cut(s) 167, 508
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 353
Csp6I GTAC 2 cut(s) 211, 611
CspAI ACCGGT 2 cut(s) 167, 508
CviAII CATG 5 cut(s) 151, 219, 339, 447, 482
CviQI GTAC 2 cut(s) 211, 611
DdeI CTNAG 3 cut(s) 494, 519, 651
DpnI GATC 5 cut(s) 83, 202, 250, 335, 554
DpnII GATC 5 cut(s) 81, 200, 248, 333, 552
DraIII CACNNNGTG 1 cut(s) 607
EaeI YGGCCR 2 cut(s) 136, 294
EagI CGGCCG 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EclXI CGGCCG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 170
Eco52I CGGCCG 1 cut(s) 294
Eco72I CACGTG 4 cut(s) 403, 593, 604, 666
EcoT38I GRGCYC 1 cut(s) 150
Esp3I CGTCTC 2 cut(s) 424, 518
FaeI CATG 5 cut(s) 154, 222, 342, 450, 485
FaqI GGGAC 1 cut(s) 428
FatI CATG 5 cut(s) 150, 218, 338, 446, 481
FauI CCCGC 2 cut(s) 136, 215
Fnu4HI GCNGC 3 cut(s) 43, 294, 348
FokI GGATG 2 cut(s) 33, 668
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 43, 294, 348
GluI GCNGC 3 cut(s) 43, 294, 348
HaeIII GGCC 2 cut(s) 138, 296
HapII CCGG 2 cut(s) 168, 509
HgaI GACGC 1 cut(s) 353
Hin1II CATG 5 cut(s) 154, 222, 342, 450, 485
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 7 cut(s) 95, 235, 328, 478, 485, 496, 503
HpaII CCGG 2 cut(s) 168, 509
HphI GGTGA 2 cut(s) 312, 498
Hpy188I TCNGA 4 cut(s) 240, 333, 520, 652
Hpy188III TCNNGA 5 cut(s) 151, 173, 270, 482, 500
Hpy99I CGWCG 3 cut(s) 347, 532, 535
HpyCH4III ACNGT 2 cut(s) 56, 115
HpyCH4IV ACGT 7 cut(s) 402, 423, 465, 592, 603, 647, 665
HpyCH4V TGCA 4 cut(s) 45, 446, 450, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 344
HpyF3I CTNAG 3 cut(s) 494, 519, 651
HpySE526I ACGT 7 cut(s) 402, 423, 465, 592, 603, 647, 665
Hsp92II CATG 5 cut(s) 154, 222, 342, 450, 485
KpnI GGTACC 1 cut(s) 614
Kzo9I GATC 5 cut(s) 81, 200, 248, 333, 552
LmnI GCTCC 2 cut(s) 435, 580
LpnPI CCDG 9 cut(s) 181, 186, 201, 255, 262, 342, 397, 522, 671
Lsp1109I GCAGC 2 cut(s) 29, 359
LweI GCATC 1 cut(s) 289
MaeII ACGT 7 cut(s) 402, 423, 465, 592, 603, 647, 665
MaeIII GTNAC 6 cut(s) 14, 325, 352, 489, 497, 504
MalI GATC 5 cut(s) 83, 202, 250, 335, 554
MboI GATC 5 cut(s) 81, 200, 248, 333, 552
MboII GAAGA 5 cut(s) 65, 109, 467, 507, 631
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 150
MlyI GAGTC 5 cut(s) 322, 487, 494, 505, 512
MmeI TCCRAC 1 cut(s) 558
MseI TTAA 2 cut(s) 375, 426
MspA1I CMGCKG 2 cut(s) 92, 350
MspI CCGG 2 cut(s) 168, 509
MwoI GCNNNNNNNGC 2 cut(s) 302, 344
NdeII GATC 5 cut(s) 81, 200, 248, 333, 552
NlaIII CATG 5 cut(s) 154, 222, 342, 450, 485
NlaIV GGNNCC 5 cut(s) 250, 437, 540, 582, 612
NmuCI GTSAC 4 cut(s) 325, 489, 497, 504
NspI RCATGY 3 cut(s) 222, 342, 450
PaeI GCATGC 3 cut(s) 222, 342, 450
PagI TCATGA 2 cut(s) 150, 481
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PfeI GAWTC 2 cut(s) 95, 235
PflFI GACNNNGTC 1 cut(s) 69
PinAI ACCGGT 2 cut(s) 167, 508
PkrI GCNGC 3 cut(s) 44, 295, 349
Ple19I CGATCG 1 cut(s) 336
PleI GAGTC 5 cut(s) 322, 486, 493, 504, 511
PmaCI CACGTG 4 cut(s) 403, 593, 604, 666
PmlI CACGTG 4 cut(s) 403, 593, 604, 666
PpsI GAGTC 5 cut(s) 322, 486, 493, 504, 511
Ppu21I YACGTR 4 cut(s) 403, 593, 604, 666
PshAI GACNNNNGTC 1 cut(s) 403
Psp1406I AACGTT 1 cut(s) 423
PspCI CACGTG 4 cut(s) 403, 593, 604, 666
PspN4I GGNNCC 5 cut(s) 250, 437, 540, 582, 612
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 69
PvuI CGATCG 1 cut(s) 336
RsaI GTAC 2 cut(s) 212, 612
RsaNI GTAC 2 cut(s) 211, 611
SaqAI TTAA 2 cut(s) 375, 426
SatI GCNGC 3 cut(s) 43, 294, 348
Sau3AI GATC 5 cut(s) 81, 200, 248, 333, 552
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 5 cut(s) 322, 487, 494, 505, 512
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 2 cut(s) 43, 55
SgrAI CRCCGGYG 1 cut(s) 508
SinI GGWCC 1 cut(s) 170
SmlI CTYRAG 2 cut(s) 99, 560
SmoI CTYRAG 2 cut(s) 99, 560
SphI GCATGC 3 cut(s) 222, 342, 450
SsiI CCGC 5 cut(s) 90, 143, 222, 293, 350
TaaI ACNGT 2 cut(s) 56, 115
TaiI ACGT 7 cut(s) 405, 426, 468, 595, 606, 650, 668
TaqI TCGA 1 cut(s) 25
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 95, 235
Tru1I TTAA 2 cut(s) 375, 426
Tru9I TTAA 2 cut(s) 375, 426
TscAI CASTG 3 cut(s) 52, 498, 700
TseFI GTSAC 4 cut(s) 325, 489, 497, 504
TseI GCWGC 2 cut(s) 42, 347
Tsp45I GTSAC 4 cut(s) 325, 489, 497, 504
TspDTI ATGAA 2 cut(s) 167, 632
TspGWI ACGGA 6 cut(s) 33, 173, 241, 261, 448, 548
TspRI CASTG 3 cut(s) 52, 498, 700
Tth111I GACNNNGTC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 3 cut(s) 222, 342, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.