AT1G68510

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016185
Physical Location & Seq
Forward (+)
25706882 .. 25708503
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68510.1

Sequence Viewer

Length: 702 bp
ATGAGAATCAGCTGCAACGGGTGTAGGGTTCTACGCAAAGGTTGCAACCAAGATTGCACCATTCGACCATGCCTTCAATGGATCAAATCCGCAGACTCTCAAGCCAATGCTACACTCTTCCTTGCTAAGTTCTACGGTCGAGCCGGTCTTCTTAACCTCATCGAATCCGGTCCTGATCACCTTCGTCCCGCAATATTTAGGTCACTTCTGTACGAGGCTTGTGGTCGGATCGTGAACCCTGTAGATGGTTCGGTTGGTTTGATGTGGTCAGGGAACTGGGCTCAGTGCCAAGCAGCTGTTGACGCCGTGCTCAACGGCTTACCCATAACTCACACACCTCTTCCAAGTGCATCCGCGTCGCACCAGATCATTCCTCCCCACAGGACTTACGATATACGCCACGTGGCTAAAGATCCAACAACCGGCGGCGACAGTTCGGAGAATCTGGCCACACGTGTAAACGCTAACAAGAGCAAGACGCAAACTGGCCGATTCAAACGTGAATCCGTGAACCAACTAGGTGAATGTAGTCATGACATGTGGCAACTCCCAAGTTCTAGTGCTACGCATGGTTATGGCCACTTCACGTTGGAGAATGTGGAGAGCCGAAGGGAAGCTCCATTTAATCAAAGTTCTCCAAATCTTGGGTTTGATGATCAAGTCGATATCAACGAGGTTGGCTTAGAGCTCAGACTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

233

Amino Acids

25.54

Weight (kDa)

7.63

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 101 1.6e-21 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67100 AT1G68510
fragaria_vesca FvH4_4g27380
malus_domestica MD16G1042900.v1.1
prunus_persica Prupe.1G311000_v2.0.a1
pyrus_communis pycom16g03700
rosa_chinensis RchiOBHm_Chr4g0435181
rosa_laevigata RLG00000006611
rosa_roxburghii Rroxscaffold_5G00376400
rosa_rugosa Rorug04G0282800
rosa_samantha Rh4AG338600 Rh4BG346700 Rh4CG361300 Rh4DG341100
rosa_wichuraiana Rw4G029530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 644
AccII CGCG 1 cut(s) 356
AciI CCGC 4 cut(s) 90, 189, 354, 426
AclWI GGATC 3 cut(s) 89, 236, 407
AcoI YGGCCR 3 cut(s) 447, 487, 577
AcvI CACGTG 2 cut(s) 403, 455
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 3 cut(s) 245, 422, 644
AflIII ACRYGT 3 cut(s) 452, 454, 537
AgsI TTSAA 2 cut(s) 77, 496
AluBI AGCT 4 cut(s) 12, 296, 617, 688
AluI AGCT 4 cut(s) 12, 296, 617, 688
Alw21I GWGCWC 2 cut(s) 312, 690
AlwI GGATC 3 cut(s) 89, 236, 407
AoxI GGCC 3 cut(s) 447, 487, 577
ApeKI GCWGC 2 cut(s) 12, 293
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 170, 533
AvaII GGWCC 1 cut(s) 170
BalI TGGCCA 2 cut(s) 449, 579
BanII GRGCYC 2 cut(s) 283, 690
BbrPI CACGTG 2 cut(s) 403, 455
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 2 cut(s) 312, 690
BbvI GCAGC 1 cut(s) 305
BccI CCATC 1 cut(s) 239
BceAI ACGGC 2 cut(s) 290, 331
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BclI TGATCA 2 cut(s) 175, 655
BfaI CTAG 2 cut(s) 518, 558
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 3 cut(s) 13, 294, 427
BlsI GCNGC 3 cut(s) 14, 295, 428
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 84
BsaAI YACGTR 2 cut(s) 403, 455
BsaHI GRCGYC 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 422, 644
Bse118I RCCGGY 2 cut(s) 143, 422
Bse1I ACTGG 2 cut(s) 281, 490
BseGI GGATG 1 cut(s) 350
BseLI CCNNNNNNNGG 3 cut(s) 245, 422, 644
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 281, 490
BseXI GCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 449, 489, 579
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 312, 690
BsiSI CCGG 3 cut(s) 144, 168, 423
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 3 cut(s) 245, 422, 644
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 3 cut(s) 449, 489, 579
Bsp1286I GDGCHC 3 cut(s) 283, 312, 690
Bsp143I GATC 6 cut(s) 81, 175, 228, 366, 412, 655
BspACI CCGC 4 cut(s) 90, 189, 354, 426
BspANI GGCC 3 cut(s) 449, 489, 579
BspCNI CTCAG 2 cut(s) 295, 702
BspFNI CGCG 1 cut(s) 356
BspHI TCATGA 1 cut(s) 532
BspPI GGATC 3 cut(s) 89, 236, 407
BsrFI RCCGGY 2 cut(s) 143, 422
BsrI ACTGG 2 cut(s) 281, 490
BssAI RCCGGY 2 cut(s) 143, 422
BssMI GATC 6 cut(s) 81, 175, 228, 366, 412, 655
BssNI GRCGYC 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 137, 434
Bst6I CTCTTC 2 cut(s) 122, 345
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 2 cut(s) 403, 455
BstDEI CTNAG 4 cut(s) 126, 282, 682, 689
BstF5I GGATG 1 cut(s) 350
BstFNI CGCG 1 cut(s) 356
BstKTI GATC 6 cut(s) 84, 178, 231, 369, 415, 658
BstMBI GATC 6 cut(s) 81, 175, 228, 366, 412, 655
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 42, 302
BstNSI RCATGY 1 cut(s) 541
BstSFI CTRYAG 1 cut(s) 240
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 3 cut(s) 449, 489, 579
BtsCI GGATG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 290
CciI TCATGA 1 cut(s) 532
Cfr10I RCCGGY 2 cut(s) 143, 422
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 3 cut(s) 311, 345, 487
Csp6I GTAC 1 cut(s) 211
CviAII CATG 4 cut(s) 69, 533, 538, 569
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 4 cut(s) 126, 282, 682, 689
DpnI GATC 6 cut(s) 83, 177, 230, 368, 414, 657
DpnII GATC 6 cut(s) 81, 175, 228, 366, 412, 655
EaeI YGGCCR 3 cut(s) 447, 487, 577
Eam1104I CTCTTC 2 cut(s) 122, 345
EarI CTCTTC 2 cut(s) 122, 345
Ecl136II GAGCTC 1 cut(s) 688
Eco24I GRGCYC 2 cut(s) 283, 690
Eco32I GATATC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 688
Eco72I CACGTG 2 cut(s) 403, 455
EcoICRI GAGCTC 1 cut(s) 688
EcoRV GATATC 1 cut(s) 667
EcoT38I GRGCYC 2 cut(s) 283, 690
FaeI CATG 4 cut(s) 72, 536, 541, 572
FaiI YATR 7 cut(s) 70, 326, 395, 534, 539, 570, 576
FaqI GGGAC 1 cut(s) 171
FatI CATG 4 cut(s) 68, 532, 537, 568
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 2 cut(s) 175, 655
Fnu4HI GCNGC 3 cut(s) 13, 294, 427
FokI GGATG 1 cut(s) 337
FriOI GRGCYC 2 cut(s) 283, 690
Fsp4HI GCNGC 3 cut(s) 13, 294, 427
FspBI CTAG 2 cut(s) 518, 558
GluI GCNGC 3 cut(s) 13, 294, 427
HaeIII GGCC 3 cut(s) 449, 489, 579
HapII CCGG 3 cut(s) 144, 168, 423
HgaI GACGC 3 cut(s) 311, 345, 487
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 4 cut(s) 72, 536, 541, 572
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 6 cut(s) 6, 95, 164, 442, 492, 503
HpaII CCGG 3 cut(s) 144, 168, 423
HphI GGTGA 2 cut(s) 170, 533
Hpy166II GTNNAC 4 cut(s) 235, 301, 460, 511
Hpy188I TCNGA 3 cut(s) 228, 439, 692
Hpy188III TCNNGA 3 cut(s) 173, 232, 533
Hpy8I GTNNAC 4 cut(s) 235, 301, 460, 511
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 3 cut(s) 83, 191, 603
HpyCH4III ACNGT 2 cut(s) 137, 434
HpyCH4IV ACGT 4 cut(s) 402, 454, 499, 587
HpyCH4V TGCA 4 cut(s) 15, 45, 57, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 302
HpyF3I CTNAG 4 cut(s) 126, 282, 682, 689
HpySE526I ACGT 4 cut(s) 402, 454, 499, 587
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 4 cut(s) 72, 536, 541, 572
Ksp22I TGATCA 2 cut(s) 175, 655
Kzo9I GATC 6 cut(s) 81, 175, 228, 366, 412, 655
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 1 cut(s) 359
MaeI CTAG 2 cut(s) 518, 558
MaeII ACGT 4 cut(s) 402, 454, 499, 587
MaeIII GTNAC 1 cut(s) 201
MalI GATC 6 cut(s) 83, 177, 230, 368, 414, 657
MboI GATC 6 cut(s) 81, 175, 228, 366, 412, 655
MboII GAAGA 3 cut(s) 109, 140, 332
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 3 cut(s) 283, 312, 690
MlsI TGGCCA 2 cut(s) 449, 579
MluNI TGGCCA 2 cut(s) 449, 579
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 3 cut(s) 206, 440, 570
MnlI CCTC 5 cut(s) 167, 208, 348, 384, 667
Mox20I TGGCCA 2 cut(s) 449, 579
MscI TGGCCA 2 cut(s) 449, 579
MseI TTAA 2 cut(s) 153, 624
MslI CAYNNNNRTG 1 cut(s) 573
Msp20I TGGCCA 2 cut(s) 449, 579
MspA1I CMGCKG 2 cut(s) 12, 296
MspI CCGG 3 cut(s) 144, 168, 423
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 42, 302
NdeII GATC 6 cut(s) 81, 175, 228, 366, 412, 655
NlaIII CATG 4 cut(s) 72, 536, 541, 572
NmuCI GTSAC 1 cut(s) 201
NspI RCATGY 1 cut(s) 541
PagI TCATGA 1 cut(s) 532
PciI ACATGT 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PfeI GAWTC 5 cut(s) 6, 164, 442, 492, 503
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 3 cut(s) 14, 295, 428
PleI GAGTC 1 cut(s) 89
PmaCI CACGTG 2 cut(s) 403, 455
PmlI CACGTG 2 cut(s) 403, 455
PpsI GAGTC 1 cut(s) 89
Ppu21I YACGTR 2 cut(s) 403, 455
PscI ACATGT 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 690
PspCI CACGTG 2 cut(s) 403, 455
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 412
PvuII CAGCTG 2 cut(s) 12, 296
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 2 cut(s) 153, 624
SatI GCNGC 3 cut(s) 13, 294, 427
Sau3AI GATC 6 cut(s) 81, 175, 228, 366, 412, 655
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 3 cut(s) 283, 312, 690
SfaNI GCATC 1 cut(s) 359
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SsiI CCGC 4 cut(s) 90, 189, 354, 426
SspI AATATT 1 cut(s) 195
SspMI CTAG 2 cut(s) 518, 558
SstI GAGCTC 1 cut(s) 690
TaaI ACNGT 2 cut(s) 137, 434
TaiI ACGT 4 cut(s) 405, 457, 502, 590
TaqI TCGA 4 cut(s) 64, 139, 162, 663
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 5 cut(s) 6, 164, 442, 492, 503
Tru1I TTAA 2 cut(s) 153, 624
Tru9I TTAA 2 cut(s) 153, 624
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 2 cut(s) 12, 293
Tsp45I GTSAC 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XspI CTAG 2 cut(s) 518, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.