Rroxscaffold_5G00376400

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016185
Physical Location & Seq
Forward (+)
57114699 .. 57115519
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376400.1

Sequence Viewer

Length: 711 bp
ATGAGGACTAGCTGCAATGGCTGTAGGGTTCTTCGCAAAGGTTGCAGTGAGAACTGCGAAATCCGACCCTGCATTGAGTGGATCAAATCGCCGGAATCCCAGGCCAATGCCACTCTTTTCTTGGCCAAATTCTACGGCCGTGCCGGGCTTCTCAATCTCATCAACGCCGGAGCAGAACACCAGCGCCCAGGGATTTTCAAGTCGCTGCTGTACGAGGCATGCGGAAGGATTGTGAACCCGACTTTTGGCTCGGTGGGGTTGCTCTCTTCCGGGAACTGGGCCCAATGCCAGGCCGCCGTCGACGCTGTGCTCGCCGGCTTGCCGATCGTTGAAACCAATGCGCCAGTCCCACACCTGAACCCTAACCCGGTTCAGGTTCCTCCTGCCAACTCATGTGACATACGCCACGTGTCCAAGGACACGAGTTTGGGTAAGACGAGGAACCGGTTCAAGAGGTCCATGACCAGGCCGAAAATCCAGCTCGGCTCGATCACCGAGGCGGCGGCTGGATGGGGGCTGGTCAACCCACATGAGTTGGGCCAGAGTTCTAGCGGAGGTGGAGGGGAGAGGAGTATGCACTCTGTGGAAACAGTGGAGGCTCCGCGGATGATGAACAGGGGCGAACCGGACACGGTTGGGAATGATGATGAGGAGGTCGGGTTGGAACTGACTCTCGGCCTTGGCTTCGGGAAATTAAACGGAAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

236

Amino Acids

25.25

Weight (kDa)

8.13

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 102 6.2e-21 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67100 AT1G68510
fragaria_vesca FvH4_4g27380
malus_domestica MD16G1042900.v1.1
prunus_persica Prupe.1G311000_v2.0.a1
pyrus_communis pycom16g03700
rosa_chinensis RchiOBHm_Chr4g0435181
rosa_laevigata RLG00000006611
rosa_roxburghii Rroxscaffold_5G00376400
rosa_rugosa Rorug04G0282800
rosa_samantha Rh4AG338600 Rh4BG346700 Rh4CG361300 Rh4DG341100
rosa_wichuraiana Rw4G029530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 604
AciI CCGC 7 cut(s) 222, 294, 500, 503, 552, 602, 604
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 2 cut(s) 123, 136
AcsI RAATTY 1 cut(s) 128
AcvI CACGTG 1 cut(s) 409
AdeI CACNNNGTG 1 cut(s) 583
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 6 cut(s) 245, 276, 289, 367, 373, 465
AflIII ACRYGT 1 cut(s) 408
AgeI ACCGGT 1 cut(s) 444
AgsI TTSAA 3 cut(s) 199, 332, 451
AjnI CCWGG 4 cut(s) 99, 187, 288, 464
AluBI AGCT 2 cut(s) 12, 481
AluI AGCT 2 cut(s) 12, 481
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 1 cut(s) 89
AoxI GGCC 8 cut(s) 102, 123, 136, 279, 291, 467, 538, 676
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 12, 205
ApoI RAATTY 1 cut(s) 128
AsiGI ACCGGT 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 2 cut(s) 186, 343
AspS9I GGNCC 4 cut(s) 279, 280, 456, 538
AsuC2I CCSGG 3 cut(s) 145, 271, 368
AsuHPI GGTGA 1 cut(s) 484
AvaII GGWCC 1 cut(s) 456
BaeGI GKGCMC 1 cut(s) 283
BalI TGGCCA 1 cut(s) 125
BanII GRGCYC 1 cut(s) 283
BauI CACGAG 1 cut(s) 421
BbrPI CACGTG 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 504
BceAI ACGGC 3 cut(s) 123, 151, 281
BciT130I CCWGG 4 cut(s) 101, 189, 290, 466
BcnI CCSGG 3 cut(s) 145, 271, 368
BfaI CTAG 2 cut(s) 9, 549
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 5 cut(s) 13, 206, 294, 501, 504
BlsI GCNGC 5 cut(s) 14, 207, 295, 502, 505
Bme1390I CCNGG 7 cut(s) 101, 145, 189, 271, 290, 368, 466
Bme18I GGWCC 1 cut(s) 456
BmgT120I GGNCC 4 cut(s) 279, 280, 456, 538
BmiI GGNNCC 4 cut(s) 281, 378, 443, 600
BmrFI CCNGG 7 cut(s) 101, 145, 189, 271, 290, 368, 466
BmrI ACTGGG 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 286
BpuMI CCSGG 3 cut(s) 145, 271, 368
BsaAI YACGTR 1 cut(s) 409
BsaJI CCNNGG 7 cut(s) 99, 187, 188, 414, 495, 602, 679
BsaWI WCCGGW 2 cut(s) 444, 625
BsaXI ACNNNNNCTCC 2 cut(s) 644, 674
Bsc4I CCNNNNNNNGG 6 cut(s) 245, 276, 289, 367, 373, 465
Bse118I RCCGGY 2 cut(s) 314, 444
Bse1I ACTGG 2 cut(s) 281, 344
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 4 cut(s) 101, 189, 290, 466
BseDI CCNNGG 7 cut(s) 99, 187, 188, 414, 495, 602, 679
BseGI GGATG 2 cut(s) 515, 612
BseLI CCNNNNNNNGG 6 cut(s) 245, 276, 289, 367, 373, 465
BseMI GCAATG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 281, 344
BseRI GAGGAG 2 cut(s) 583, 665
BseSI GKGCMC 1 cut(s) 283
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 604
Bsh1285I CGRYCG 2 cut(s) 139, 327
BshFI GGCC 8 cut(s) 104, 125, 138, 281, 293, 469, 540, 678
BshTI ACCGGT 1 cut(s) 444
BsiEI CGRYCG 2 cut(s) 139, 327
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 8 cut(s) 92, 144, 168, 270, 315, 368, 445, 626
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 6 cut(s) 245, 276, 289, 367, 373, 465
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 8 cut(s) 104, 125, 138, 281, 293, 469, 540, 678
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 283, 312
Bsp143I GATC 3 cut(s) 81, 324, 489
BspACI CCGC 7 cut(s) 222, 294, 500, 503, 552, 602, 604
BspANI GGCC 8 cut(s) 104, 125, 138, 281, 293, 469, 540, 678
BspFNI CGCG 1 cut(s) 604
BspLI GGNNCC 4 cut(s) 281, 378, 443, 600
BspPI GGATC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 2 cut(s) 314, 444
BsrI ACTGG 2 cut(s) 281, 344
BssAI RCCGGY 2 cut(s) 314, 444
BssECI CCNNGG 7 cut(s) 99, 187, 188, 414, 495, 602, 679
BssMI GATC 3 cut(s) 81, 324, 489
BssSI CACGAG 1 cut(s) 421
BssT1I CCWWGG 2 cut(s) 414, 679
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 4 cut(s) 101, 189, 290, 466
Bst4CI ACNGT 2 cut(s) 592, 634
Bst6I CTCTTC 1 cut(s) 271
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 4 cut(s) 220, 312, 316, 320
BstDSI CCRYGG 1 cut(s) 602
BstF5I GGATG 2 cut(s) 515, 612
BstFNI CGCG 1 cut(s) 604
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 186, 343
BstKTI GATC 3 cut(s) 84, 327, 492
BstMBI GATC 3 cut(s) 81, 324, 489
BstMCI CGRYCG 2 cut(s) 139, 327
BstMWI GCNNNNNNNGC 4 cut(s) 18, 42, 302, 311
BstNI CCWGG 4 cut(s) 101, 189, 290, 466
BstNSI RCATGY 1 cut(s) 222
BstSCI CCNGG 7 cut(s) 99, 143, 187, 269, 288, 366, 464
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 1 cut(s) 604
BstV1I GCAGC 1 cut(s) 192
BstZI CGGCCG 1 cut(s) 136
BsuRI GGCC 8 cut(s) 104, 125, 138, 281, 293, 469, 540, 678
BtgI CCRYGG 1 cut(s) 602
BtsCI GGATG 2 cut(s) 515, 612
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 52, 597
Cac8I GCNNGC 4 cut(s) 220, 312, 316, 320
CfoI GCGC 2 cut(s) 186, 343
Cfr10I RCCGGY 2 cut(s) 314, 444
Cfr13I GGNCC 4 cut(s) 279, 280, 456, 538
Cfr42I CCGCGG 1 cut(s) 605
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 211
CspAI ACCGGT 1 cut(s) 444
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 4 cut(s) 219, 393, 460, 530
CviQI GTAC 1 cut(s) 211
DpnI GATC 3 cut(s) 83, 326, 491
DpnII GATC 3 cut(s) 81, 324, 489
DraIII CACNNNGTG 1 cut(s) 583
EaeI YGGCCR 2 cut(s) 123, 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
EclXI CGGCCG 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 414, 679
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 456
Eco52I CGGCCG 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 409
EcoRII CCWGG 4 cut(s) 99, 187, 288, 464
EcoT14I CCWWGG 2 cut(s) 414, 679
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 2 cut(s) 414, 679
FaeI CATG 4 cut(s) 222, 396, 463, 533
FaiI YATR 6 cut(s) 220, 394, 401, 461, 531, 575
FaqI GGGAC 1 cut(s) 332
FatI CATG 4 cut(s) 218, 392, 459, 529
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 5 cut(s) 13, 206, 294, 501, 504
FokI GGATG 2 cut(s) 522, 619
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 5 cut(s) 13, 206, 294, 501, 504
FspBI CTAG 2 cut(s) 9, 549
GlaI GCGC 2 cut(s) 185, 342
GluI GCNGC 5 cut(s) 13, 206, 294, 501, 504
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 8 cut(s) 104, 125, 138, 281, 293, 469, 540, 678
HapII CCGG 8 cut(s) 92, 144, 168, 270, 315, 368, 445, 626
HgaI GACGC 1 cut(s) 311
HhaI GCGC 2 cut(s) 186, 343
Hin1II CATG 4 cut(s) 222, 396, 463, 533
Hin6I GCGC 2 cut(s) 184, 341
HinP1I GCGC 2 cut(s) 184, 341
HincII GTYRAC 2 cut(s) 301, 523
HindII GTYRAC 2 cut(s) 301, 523
HinfI GANTC 2 cut(s) 95, 670
HpaII CCGG 8 cut(s) 92, 144, 168, 270, 315, 368, 445, 626
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 3 cut(s) 235, 301, 523
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 2 cut(s) 451, 688
Hpy8I GTNNAC 3 cut(s) 235, 301, 523
Hpy99I CGWCG 2 cut(s) 302, 305
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 2 cut(s) 592, 634
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 4 cut(s) 15, 45, 72, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 42, 302, 311
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 222, 396, 463, 533
HspAI GCGC 2 cut(s) 184, 341
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
KspI CCGCGG 1 cut(s) 605
Kzo9I GATC 3 cut(s) 81, 324, 489
LmnI GCTCC 2 cut(s) 170, 604
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 2 cut(s) 9, 549
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 395
MalI GATC 3 cut(s) 83, 326, 491
MboI GATC 3 cut(s) 81, 324, 489
MboII GAAGA 2 cut(s) 23, 258
MhlI GDGCHC 2 cut(s) 283, 312
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 2 cut(s) 128, 692
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 2 cut(s) 88, 642
Mox20I TGGCCA 1 cut(s) 125
MroNI GCCGGC 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 446
MscI TGGCCA 1 cut(s) 125
MseI TTAA 1 cut(s) 695
Msp20I TGGCCA 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 604
MspI CCGG 8 cut(s) 92, 144, 168, 270, 315, 368, 445, 626
MspR9I CCNGG 7 cut(s) 101, 145, 189, 271, 290, 368, 466
MvaI CCWGG 4 cut(s) 101, 189, 290, 466
MvnI CGCG 1 cut(s) 604
MwoI GCNNNNNNNGC 4 cut(s) 18, 42, 302, 311
NaeI GCCGGC 1 cut(s) 316
NciI CCSGG 3 cut(s) 145, 271, 368
NdeII GATC 3 cut(s) 81, 324, 489
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 4 cut(s) 222, 396, 463, 533
NlaIV GGNNCC 4 cut(s) 281, 378, 443, 600
NmeAIII GCCGAG 2 cut(s) 462, 654
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 222
PaeI GCATGC 1 cut(s) 222
PasI CCCWGGG 1 cut(s) 188
PdiI GCCGGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 444
PkrI GCNGC 5 cut(s) 14, 207, 295, 502, 505
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 1 cut(s) 664
PmaCI CACGTG 1 cut(s) 409
PmlI CACGTG 1 cut(s) 409
PpsI GAGTC 1 cut(s) 664
Ppu21I YACGTR 1 cut(s) 409
Psp6I CCWGG 4 cut(s) 99, 187, 288, 464
PspCI CACGTG 1 cut(s) 409
PspGI CCWGG 4 cut(s) 99, 187, 288, 464
PspN4I GGNNCC 4 cut(s) 281, 378, 443, 600
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 4 cut(s) 279, 280, 456, 538
PvuI CGATCG 1 cut(s) 327
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SacII CCGCGG 1 cut(s) 605
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 695
SatI GCNGC 5 cut(s) 13, 206, 294, 501, 504
Sau3AI GATC 3 cut(s) 81, 324, 489
Sau96I GGNCC 4 cut(s) 279, 280, 456, 538
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 7 cut(s) 101, 145, 189, 271, 290, 368, 466
SduI GDGCHC 2 cut(s) 283, 312
SetI ASST 9 cut(s) 14, 43, 357, 378, 411, 458, 483, 559, 657
SfcI CTRYAG 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 605
SgrBI CCGCGG 1 cut(s) 605
SgrDI CGTCGACG 1 cut(s) 299
SinI GGWCC 1 cut(s) 456
SphI GCATGC 1 cut(s) 222
Sse9I AATT 2 cut(s) 128, 692
SsiI CCGC 7 cut(s) 222, 294, 500, 503, 552, 602, 604
SspMI CTAG 2 cut(s) 9, 549
StyD4I CCNGG 7 cut(s) 99, 143, 187, 269, 288, 366, 464
StyI CCWWGG 2 cut(s) 414, 679
TaaI ACNGT 2 cut(s) 592, 634
TaiI ACGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 300, 488
TasI AATT 2 cut(s) 128, 692
TauI GCSGC 3 cut(s) 296, 503, 506
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TscAI CASTG 2 cut(s) 52, 597
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 2 cut(s) 12, 205
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 626
TspRI CASTG 2 cut(s) 52, 597
VpaK11BI GGWCC 1 cut(s) 456
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 2 cut(s) 9, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.