Prupe.1G311000_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016185
Physical Location & Seq
Reverse (-)
30221710 .. 30222995
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G311000.1

Sequence Viewer

Length: 657 bp
ATGAGGATGAGCTGCAATGGGTGCAGGGTGCTTCGCAAAGGGTGCAGTGAGAAATGCTCAATCAGGCCCAGCATTGAGTGGATCAAATCCCCTGATTCTCAAGCCAACGCCACTCTTTTTCTTGCCAAATTCTATGGCCGCGCTGGCCTTCTCAACCTCATCAATGCCGGCTCCCAACACCTCCGCCCTGCTATTTTCAAGTCACTTTTGTACGAGGCTTGTGGACGGATTGTGAATCCGACATTTGGGTCGGTTGGTTTGATGTCGTCCGGGAGCTGGGCCCAATGCCAAGCAGCCGTTGATGCAGTGCTTGCAGGGTCGCCCATCGCCGGACTTGATGCGGATGCGCTAAACCTTATCCCCAGCCCTCCTAACAAATCCGGCGACATACGCCACGTGTTCAGGGACTCGAACTCGGGGGCTTCTCGTAACAAAGTTACAACCCGGAACAGGTTCAAGAGATCCATGAACAGGACCAAAACCCATCCTGGCTCGCTCACTGAGTTTGCAACCGGGTCACATATGGCTCAATTTTGTAACTTTCCTGACCCGGAAGACTTGTGCCCGAGTCCGGAAGGAAATGGGGCTGGCGGAGATTATGATGGAGAGGTTGGGTTGGAACTGACTCTTGGATTAGTTCCAATGCGTCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

219

Amino Acids

23.36

Weight (kDa)

8.99

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67100 AT1G68510
fragaria_vesca FvH4_4g27380
malus_domestica MD16G1042900.v1.1
prunus_persica Prupe.1G311000_v2.0.a1
pyrus_communis pycom16g03700
rosa_chinensis RchiOBHm_Chr4g0435181
rosa_laevigata RLG00000006611
rosa_roxburghii Rroxscaffold_5G00376400
rosa_rugosa Rorug04G0282800
rosa_samantha Rh4AG338600 Rh4BG346700 Rh4CG361300 Rh4DG341100
rosa_wichuraiana Rw4G029530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AccII CGCG 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 571
AciI CCGC 4 cut(s) 139, 184, 341, 591
AclWI GGATC 2 cut(s) 89, 456
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 128
AcvI CACGTG 1 cut(s) 397
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 6 cut(s) 245, 276, 329, 450, 471, 571
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 2 cut(s) 199, 457
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 612, 644
AluBI AGCT 2 cut(s) 12, 276
AluI AGCT 2 cut(s) 12, 276
AlwI GGATC 2 cut(s) 89, 456
Ama87I CYCGRG 2 cut(s) 415, 565
Aor13HI TCCGGA 1 cut(s) 571
AoxI GGCC 4 cut(s) 65, 136, 145, 279
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 12, 293
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 2 cut(s) 143, 349
AspS9I GGNCC 4 cut(s) 66, 279, 280, 474
AsuC2I CCSGG 4 cut(s) 271, 445, 514, 551
AvaI CYCGRG 2 cut(s) 415, 565
AvaII GGWCC 1 cut(s) 474
BaeGI GKGCMC 2 cut(s) 283, 566
BanII GRGCYC 1 cut(s) 283
BbrPI CACGTG 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 305
BccI CCATC 3 cut(s) 332, 492, 596
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 489
BcnI CCSGG 4 cut(s) 271, 445, 514, 551
BglI GCCNNNNNGGC 1 cut(s) 144
BisI GCNGC 3 cut(s) 13, 139, 294
BlsI GCNGC 3 cut(s) 14, 140, 295
Bme1390I CCNGG 5 cut(s) 271, 445, 489, 514, 551
Bme18I GGWCC 1 cut(s) 474
BmeT110I CYCGRG 2 cut(s) 415, 565
BmgT120I GGNCC 4 cut(s) 66, 279, 280, 474
BmiI GGNNCC 2 cut(s) 172, 281
BmrFI CCNGG 5 cut(s) 271, 445, 489, 514, 551
BmsI GCATC 3 cut(s) 292, 328, 334
BpiI GAAGAC 1 cut(s) 561
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 4 cut(s) 271, 445, 514, 551
BsaAI YACGTR 1 cut(s) 397
BsaWI WCCGGW 1 cut(s) 571
Bsc4I CCNNNNNNNGG 6 cut(s) 245, 276, 329, 450, 471, 571
Bse118I RCCGGY 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 22
BseAI TCCGGA 1 cut(s) 571
BseBI CCWGG 1 cut(s) 489
BseGI GGATG 3 cut(s) 12, 349, 484
BseLI CCNNNNNNNGG 6 cut(s) 245, 276, 329, 450, 471, 571
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 492
BseSI GKGCMC 2 cut(s) 283, 566
BseXI GCAGC 1 cut(s) 305
BseYI CCCAGC 3 cut(s) 68, 276, 362
BsgI GTGCAG 2 cut(s) 43, 64
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 4 cut(s) 67, 138, 147, 281
BsiHKCI CYCGRG 2 cut(s) 415, 565
BsiSI CCGG 8 cut(s) 168, 270, 330, 381, 445, 513, 551, 572
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 6 cut(s) 245, 276, 329, 450, 471, 571
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 4 cut(s) 67, 138, 147, 281
BsoBI CYCGRG 2 cut(s) 415, 565
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 283, 566
Bsp13I TCCGGA 1 cut(s) 571
Bsp143I GATC 2 cut(s) 81, 461
BspACI CCGC 4 cut(s) 139, 184, 341, 591
BspANI GGCC 4 cut(s) 67, 138, 147, 281
BspCNI CTCAG 1 cut(s) 493
BspEI TCCGGA 1 cut(s) 571
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 172, 281
BspPI GGATC 2 cut(s) 89, 456
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssMI GATC 2 cut(s) 81, 461
Bst2UI CCWGG 1 cut(s) 489
BstAPI GCANNNNNTGC 3 cut(s) 21, 42, 311
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 5 cut(s) 145, 169, 312, 494, 589
BstDEI CTNAG 1 cut(s) 501
BstF5I GGATG 3 cut(s) 12, 349, 484
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 2 cut(s) 143, 349
BstKTI GATC 2 cut(s) 84, 464
BstMBI GATC 2 cut(s) 81, 461
BstMWI GCNNNNNNNGC 6 cut(s) 21, 42, 144, 302, 311, 390
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 5 cut(s) 269, 443, 487, 512, 549
BstSLI GKGCMC 2 cut(s) 283, 566
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 4 cut(s) 67, 138, 147, 281
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 12, 349, 484
BtsI GCAGTG 2 cut(s) 52, 312
BtsIMutI CAGTG 3 cut(s) 52, 312, 498
Cac8I GCNNGC 5 cut(s) 145, 169, 312, 494, 589
CfoI GCGC 2 cut(s) 143, 349
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 4 cut(s) 66, 279, 280, 474
CseI GACGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 466
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 501
DpnI GATC 2 cut(s) 83, 463
DpnII GATC 2 cut(s) 81, 461
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 136
EciI GGCGGA 2 cut(s) 173, 606
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 474
Eco72I CACGTG 1 cut(s) 397
Eco88I CYCGRG 2 cut(s) 415, 565
EcoRII CCWGG 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 283
FaeI CATG 1 cut(s) 469
FaiI YATR 6 cut(s) 135, 389, 467, 522, 524, 600
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 465
FauNDI CATATG 1 cut(s) 522
Fnu4HI GCNGC 3 cut(s) 13, 139, 294
FokI GGATG 3 cut(s) 19, 356, 471
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 13, 139, 294
GlaI GCGC 2 cut(s) 142, 348
GluI GCNGC 3 cut(s) 13, 139, 294
GsaI CCCAGC 3 cut(s) 72, 280, 366
HaeIII GGCC 4 cut(s) 67, 138, 147, 281
HapII CCGG 8 cut(s) 168, 270, 330, 381, 445, 513, 551, 572
HgaI GACGC 1 cut(s) 635
HhaI GCGC 2 cut(s) 143, 349
Hin1II CATG 1 cut(s) 469
Hin6I GCGC 2 cut(s) 141, 347
HinP1I GCGC 2 cut(s) 141, 347
HinfI GANTC 5 cut(s) 95, 235, 407, 568, 625
HpaII CCGG 8 cut(s) 168, 270, 330, 381, 445, 513, 551, 572
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 3 cut(s) 457, 545, 572
Hpy8I GTNNAC 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 158, 569
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 6 cut(s) 15, 24, 45, 305, 314, 509
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 42, 144, 302, 311, 390
HpyF3I CTNAG 1 cut(s) 501
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 1 cut(s) 469
HspAI GCGC 2 cut(s) 141, 347
Kpn2I TCCGGA 1 cut(s) 571
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 81, 461
LmnI GCTCC 2 cut(s) 176, 273
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 3 cut(s) 292, 328, 334
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 5 cut(s) 201, 428, 436, 516, 536
MalI GATC 2 cut(s) 83, 463
MboI GATC 2 cut(s) 81, 461
MboII GAAGA 1 cut(s) 566
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 2 cut(s) 283, 566
MluCI AATT 3 cut(s) 128, 530, 652
MlyI GAGTC 3 cut(s) 401, 577, 619
MmeI TCCRAC 2 cut(s) 263, 597
MnlI CCTC 5 cut(s) 167, 191, 208, 378, 601
MroI TCCGGA 1 cut(s) 571
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 651
MspI CCGG 8 cut(s) 168, 270, 330, 381, 445, 513, 551, 572
MspR9I CCNGG 5 cut(s) 271, 445, 489, 514, 551
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 6 cut(s) 21, 42, 144, 302, 311, 390
NaeI GCCGGC 1 cut(s) 169
NciI CCSGG 4 cut(s) 271, 445, 514, 551
NdeI CATATG 1 cut(s) 522
NdeII GATC 2 cut(s) 81, 461
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 1 cut(s) 469
NlaIV GGNNCC 2 cut(s) 172, 281
NmuCI GTSAC 2 cut(s) 201, 516
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 95, 235
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 3 cut(s) 14, 140, 295
PleI GAGTC 3 cut(s) 401, 576, 619
PmaCI CACGTG 1 cut(s) 397
PmlI CACGTG 1 cut(s) 397
PpsI GAGTC 3 cut(s) 401, 576, 619
Ppu21I YACGTR 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 487
PspCI CACGTG 1 cut(s) 397
PspFI CCCAGC 3 cut(s) 68, 276, 362
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 2 cut(s) 172, 281
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 4 cut(s) 66, 279, 280, 474
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 3 cut(s) 13, 139, 294
Sau3AI GATC 2 cut(s) 81, 461
Sau96I GGNCC 4 cut(s) 66, 279, 280, 474
SchI GAGTC 3 cut(s) 401, 577, 619
ScrFI CCNGG 5 cut(s) 271, 445, 489, 514, 551
SduI GDGCHC 2 cut(s) 283, 566
SetI ASST 8 cut(s) 14, 159, 183, 278, 357, 399, 455, 612
SfaNI GCATC 3 cut(s) 292, 328, 334
SfiI GGCCNNNNNGGCC 1 cut(s) 144
SinI GGWCC 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 3 cut(s) 128, 530, 652
SsiI CCGC 4 cut(s) 139, 184, 341, 591
StyD4I CCNGG 5 cut(s) 269, 443, 487, 512, 549
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 410
TasI AATT 3 cut(s) 128, 530, 652
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 2 cut(s) 95, 235
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 3 cut(s) 52, 312, 505
TseFI GTSAC 2 cut(s) 201, 516
TseI GCWGC 2 cut(s) 12, 293
Tsp45I GTSAC 2 cut(s) 201, 516
TspDTI ATGAA 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 3 cut(s) 52, 312, 505
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.