FvH4_4g27380

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016185
Physical Location & Seq
Forward (+)
28407155 .. 28408635
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27380.t1

Sequence Viewer

Length: 696 bp
ATGAGGACTAGCTGCAATGGCTGTAGGGTTCTTCGCAAAGGTTGCAGTGAGAACTGCGAAATCCGACCCTGCATTGAGTGGATCAAATCGCCGGAATCCCAAGCCAATGCCACCCTTTTCTTGGCCAAGTTCTACGGCCGTGCCGGGCTTCTCAACCTCATCAATGCCGGAGCACAGCACCAGCGCCCAGGGATTTTCAAATCACTCCTGTACGAGGCATGCGGAAGGATCGTGAACCCGACTTTTGGGTCGGTGGGTTTGCTCTCCTCCGGGAACTGGGCCCAATGCCAGGCTGCAGTCGACGCTGTGCTCGCCGGCTTGCCGATCGTGGAAAACAATGAGCCAGTCCCATACCTGAACCCTTTCCCTCCTGTCAACTCCTGTGACATACGCCACGTGTCCAAGGACACTAGCTTGGGTAAGACCCGGAACCGGTTCAAGAGGTCCAGGTCGAAAGTCCAGCTCGGCTCGATCACGGAGGCGGCGGCGGAATGGGGTCGGGTCAACCCGCTTGAGTTTGGCCAGTGTTCTAGTGGAGGAGGAGGTGAGAGAAGCATGCAGTCAGTGGAAACAGTGGAGGCTCCGTGGGAGATGAACCAGGGCAAACCGGACCCGGTTGGAAATGGTGATGAAGAGGAGGTCGGGCTGGAACTGACTCTCGGATTTGGCTTCGGGAAATTGAAGGGAAAAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

232

Amino Acids

24.92

Weight (kDa)

8.37

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 102 5.9e-21 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67100 AT1G68510
fragaria_vesca FvH4_4g27380
malus_domestica MD16G1042900.v1.1
prunus_persica Prupe.1G311000_v2.0.a1
pyrus_communis pycom16g03700
rosa_chinensis RchiOBHm_Chr4g0435181
rosa_laevigata RLG00000006611
rosa_roxburghii Rroxscaffold_5G00376400
rosa_rugosa Rorug04G0282800
rosa_samantha Rh4AG338600 Rh4BG346700 Rh4CG361300 Rh4DG341100
rosa_wichuraiana Rw4G029530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AccI GTMKAC 1 cut(s) 300
AciI CCGC 5 cut(s) 222, 482, 485, 488, 509
AclWI GGATC 2 cut(s) 89, 236
AcoI YGGCCR 3 cut(s) 123, 136, 520
AcvI CACGTG 1 cut(s) 397
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 6 cut(s) 121, 214, 245, 276, 289, 432
AflIII ACRYGT 1 cut(s) 396
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 3 cut(s) 199, 439, 682
AjnI CCWGG 4 cut(s) 187, 288, 446, 597
AluBI AGCT 3 cut(s) 12, 414, 463
AluI AGCT 3 cut(s) 12, 414, 463
Alw21I GWGCWC 2 cut(s) 175, 312
AlwI GGATC 2 cut(s) 89, 236
AoxI GGCC 4 cut(s) 123, 136, 279, 520
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 12, 293
AsiGI ACCGGT 1 cut(s) 432
Asp700I GAANNNNTTC 2 cut(s) 362, 434
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 4 cut(s) 279, 280, 444, 610
AsuC2I CCSGG 4 cut(s) 145, 271, 427, 614
AsuHPI GGTGA 2 cut(s) 557, 638
AvaII GGWCC 2 cut(s) 444, 610
BaeGI GKGCMC 1 cut(s) 283
BalI TGGCCA 2 cut(s) 125, 522
BanII GRGCYC 1 cut(s) 283
BbrPI CACGTG 1 cut(s) 397
Bbv12I GWGCWC 2 cut(s) 175, 312
BbvI GCAGC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 123, 151
BciT130I CCWGG 4 cut(s) 189, 290, 448, 599
BcnI CCSGG 4 cut(s) 145, 271, 427, 614
BfaI CTAG 3 cut(s) 9, 411, 531
BfmI CTRYAG 2 cut(s) 22, 294
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 4 cut(s) 13, 294, 483, 486
BlsI GCNGC 4 cut(s) 14, 295, 484, 487
Bme1390I CCNGG 8 cut(s) 145, 189, 271, 290, 427, 448, 599, 614
Bme18I GGWCC 2 cut(s) 444, 610
BmgT120I GGNCC 4 cut(s) 279, 280, 444, 610
BmiI GGNNCC 4 cut(s) 281, 431, 582, 612
BmrFI CCNGG 8 cut(s) 145, 189, 271, 290, 427, 448, 599, 614
BmrI ACTGGG 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 4 cut(s) 145, 271, 427, 614
BsaAI YACGTR 1 cut(s) 397
BsaJI CCNNGG 5 cut(s) 187, 188, 402, 584, 598
BsaWI WCCGGW 2 cut(s) 432, 607
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 214, 245, 276, 289, 432
Bse118I RCCGGY 2 cut(s) 314, 432
Bse1I ACTGG 3 cut(s) 281, 344, 523
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 4 cut(s) 189, 290, 448, 599
BseDI CCNNGG 5 cut(s) 187, 188, 402, 584, 598
BseLI CCNNNNNNNGG 6 cut(s) 121, 214, 245, 276, 289, 432
BseMI GCAATG 1 cut(s) 22
BseNI ACTGG 3 cut(s) 281, 344, 523
BseRI GAGGAG 4 cut(s) 256, 552, 555, 650
BseSI GKGCMC 1 cut(s) 283
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 280
Bsh1285I CGRYCG 2 cut(s) 139, 327
BshFI GGCC 4 cut(s) 125, 138, 281, 522
BshTI ACCGGT 1 cut(s) 432
BsiEI CGRYCG 2 cut(s) 139, 327
BsiHKAI GWGCWC 2 cut(s) 175, 312
BsiSI CCGG 9 cut(s) 92, 144, 168, 270, 315, 427, 433, 608, 614
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 6 cut(s) 121, 214, 245, 276, 289, 432
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 4 cut(s) 125, 138, 281, 522
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 3 cut(s) 175, 283, 312
Bsp143I GATC 4 cut(s) 81, 228, 324, 471
BspACI CCGC 5 cut(s) 222, 482, 485, 488, 509
BspANI GGCC 4 cut(s) 125, 138, 281, 522
BspLI GGNNCC 4 cut(s) 281, 431, 582, 612
BspMAI CTGCAG 1 cut(s) 298
BspPI GGATC 2 cut(s) 89, 236
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 2 cut(s) 314, 432
BsrI ACTGG 3 cut(s) 281, 344, 523
BssAI RCCGGY 2 cut(s) 314, 432
BssECI CCNNGG 5 cut(s) 187, 188, 402, 584, 598
BssMI GATC 4 cut(s) 81, 228, 324, 471
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 4 cut(s) 189, 290, 448, 599
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 627
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 5 cut(s) 220, 312, 316, 320, 557
BstDSI CCRYGG 1 cut(s) 584
BstENI CCTNNNNNAGG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 4 cut(s) 84, 231, 327, 474
BstMBI GATC 4 cut(s) 81, 228, 324, 471
BstMCI CGRYCG 2 cut(s) 139, 327
BstMWI GCNNNNNNNGC 4 cut(s) 18, 42, 302, 311
BstNI CCWGG 4 cut(s) 189, 290, 448, 599
BstNSI RCATGY 2 cut(s) 222, 559
BstSCI CCNGG 8 cut(s) 143, 187, 269, 288, 425, 446, 597, 612
BstSFI CTRYAG 2 cut(s) 22, 294
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 280
BstZI CGGCCG 1 cut(s) 136
BsuRI GGCC 4 cut(s) 125, 138, 281, 522
BtgI CCRYGG 1 cut(s) 584
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 4 cut(s) 52, 530, 570, 579
Cac8I GCNNGC 5 cut(s) 220, 312, 316, 320, 557
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 2 cut(s) 314, 432
Cfr13I GGNCC 4 cut(s) 279, 280, 444, 610
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 211
CspAI ACCGGT 1 cut(s) 432
CviAII CATG 2 cut(s) 219, 556
CviQI GTAC 1 cut(s) 211
DpnI GATC 4 cut(s) 83, 230, 326, 473
DpnII GATC 4 cut(s) 81, 228, 324, 471
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
EaeI YGGCCR 3 cut(s) 123, 136, 520
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
EciI GGCGGA 1 cut(s) 503
EclXI CGGCCG 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 444, 610
Eco52I CGGCCG 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 397
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRII CCWGG 4 cut(s) 187, 288, 446, 597
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 2 cut(s) 222, 559
FaiI YATR 4 cut(s) 220, 352, 389, 557
FaqI GGGAC 1 cut(s) 332
FatI CATG 2 cut(s) 218, 555
FauI CCCGC 1 cut(s) 516
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 13, 294, 483, 486
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 4 cut(s) 13, 294, 483, 486
FspBI CTAG 3 cut(s) 9, 411, 531
GlaI GCGC 1 cut(s) 185
GluI GCNGC 4 cut(s) 13, 294, 483, 486
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 4 cut(s) 125, 138, 281, 522
HapII CCGG 9 cut(s) 92, 144, 168, 270, 315, 427, 433, 608, 614
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 222, 559
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 3 cut(s) 301, 376, 505
HindII GTYRAC 3 cut(s) 301, 376, 505
HinfI GANTC 2 cut(s) 95, 655
HpaII CCGG 9 cut(s) 92, 144, 168, 270, 315, 427, 433, 608, 614
HphI GGTGA 2 cut(s) 557, 638
Hpy166II GTNNAC 4 cut(s) 235, 301, 376, 505
Hpy188I TCNGA 2 cut(s) 65, 662
Hpy188III TCNNGA 3 cut(s) 232, 439, 673
Hpy8I GTNNAC 4 cut(s) 235, 301, 376, 505
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 219, 676
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 5 cut(s) 15, 45, 72, 296, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 42, 302, 311
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 2 cut(s) 222, 559
HspAI GCGC 1 cut(s) 184
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
Kzo9I GATC 4 cut(s) 81, 228, 324, 471
LmnI GCTCC 2 cut(s) 170, 586
Lsp1109I GCAGC 1 cut(s) 280
MaeI CTAG 3 cut(s) 9, 411, 531
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 383
MalI GATC 4 cut(s) 83, 230, 326, 473
MboI GATC 4 cut(s) 81, 228, 324, 471
MboII GAAGA 2 cut(s) 23, 644
MhlI GDGCHC 3 cut(s) 175, 283, 312
MlsI TGGCCA 2 cut(s) 125, 522
MluCI AATT 1 cut(s) 677
MluNI TGGCCA 2 cut(s) 125, 522
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 2 cut(s) 88, 598
Mox20I TGGCCA 2 cut(s) 125, 522
MroNI GCCGGC 1 cut(s) 314
MroXI GAANNNNTTC 2 cut(s) 362, 434
MscI TGGCCA 2 cut(s) 125, 522
Msp20I TGGCCA 2 cut(s) 125, 522
MspI CCGG 9 cut(s) 92, 144, 168, 270, 315, 427, 433, 608, 614
MspR9I CCNGG 8 cut(s) 145, 189, 271, 290, 427, 448, 599, 614
MvaI CCWGG 4 cut(s) 189, 290, 448, 599
MwoI GCNNNNNNNGC 4 cut(s) 18, 42, 302, 311
NaeI GCCGGC 1 cut(s) 316
NciI CCSGG 4 cut(s) 145, 271, 427, 614
NdeII GATC 4 cut(s) 81, 228, 324, 471
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 2 cut(s) 222, 559
NlaIV GGNNCC 4 cut(s) 281, 431, 582, 612
NmeAIII GCCGAG 1 cut(s) 444
NmuCI GTSAC 1 cut(s) 383
NspI RCATGY 2 cut(s) 222, 559
PaeI GCATGC 2 cut(s) 222, 559
PasI CCCWGGG 1 cut(s) 188
PdiI GCCGGC 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 362, 434
PfeI GAWTC 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 4 cut(s) 14, 295, 484, 487
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 1 cut(s) 649
PmaCI CACGTG 1 cut(s) 397
PmlI CACGTG 1 cut(s) 397
PpsI GAGTC 1 cut(s) 649
Ppu21I YACGTR 1 cut(s) 397
Psp6I CCWGG 4 cut(s) 187, 288, 446, 597
PspCI CACGTG 1 cut(s) 397
PspGI CCWGG 4 cut(s) 187, 288, 446, 597
PspN4I GGNNCC 4 cut(s) 281, 431, 582, 612
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 4 cut(s) 279, 280, 444, 610
PstI CTGCAG 1 cut(s) 298
PvuI CGATCG 1 cut(s) 327
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SalI GTCGAC 1 cut(s) 299
SatI GCNGC 4 cut(s) 13, 294, 483, 486
Sau3AI GATC 4 cut(s) 81, 228, 324, 471
Sau96I GGNCC 4 cut(s) 279, 280, 444, 610
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 8 cut(s) 145, 189, 271, 290, 427, 448, 599, 614
SduI GDGCHC 3 cut(s) 175, 283, 312
SfcI CTRYAG 2 cut(s) 22, 294
SinI GGWCC 2 cut(s) 444, 610
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
SphI GCATGC 2 cut(s) 222, 559
Sse9I AATT 1 cut(s) 677
SsiI CCGC 5 cut(s) 222, 482, 485, 488, 509
SspMI CTAG 3 cut(s) 9, 411, 531
StyD4I CCNGG 8 cut(s) 143, 187, 269, 288, 425, 446, 597, 612
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 1 cut(s) 399
TaqI TCGA 3 cut(s) 300, 452, 470
TasI AATT 1 cut(s) 677
TauI GCSGC 2 cut(s) 485, 488
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 4 cut(s) 52, 530, 570, 579
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 2 cut(s) 12, 293
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 2 cut(s) 608, 645
TspGWI ACGGA 2 cut(s) 491, 573
TspRI CASTG 4 cut(s) 52, 530, 570, 579
VpaK11BI GGWCC 2 cut(s) 444, 610
XagI CCTNNNNNAGG 1 cut(s) 212
XceI RCATGY 2 cut(s) 222, 559
XcmI CCANNNNNNNNNTGG 2 cut(s) 118, 530
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 2 cut(s) 362, 434
XspI CTAG 3 cut(s) 9, 411, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.