MD16G1042900.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016185
Physical Location & Seq
Forward (+)
3030086 .. 3031162
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1042900.v1.1.491

Sequence Viewer

Length: 762 bp
ATGCCCCTCACCAACTCTGTTAAATACACCTCCAATCTCCTCCATTCACATTGTAGTTTGGAGAGAATGAGAATGAGCTGCAACGGATGCAGGGTGCTTCGCAAAGGGTGCAGCGACGAATGCGAGATCAGACCCTGCATTGAGTGGATCAAATCCTCCGAGTCCCAAGCCAACGCCACACTTTTTCTTGCCAAATTCTATGGCCGCGCTGGCCTCCTCAATCTCATCAATGCTGGCTCCCCAGCCCTCCGCCCTGCTATTTTCAAGTCGTTATTGTACGAGGCGTGTGGACGGATCGTGAACCCGACGTACGGCTCGGTGGGGTTGATGTGGTCCGGGGGCTGGGACCAATGCCAGGCAGCCGTTGATGCAGTTCTTGAAGGATCGCCCATCATAGGAATTGATGCGGATGTGCTGAAGCGGAACACGAATCCGAACCTGGATCCTCCTCACAAATCCGGGGACATACGCCACGTGTCCAGGGACCCAACCTCGGGCAGTTCCTCTCATAACAAAGCTACAACCCGGAACAAGCTCAAGAGGTTCATGAACCGGCCCAAAATCCAACCAGAATCTGCAACCGGGTCAAACACCAAGAGTTTGGCACAACTCTGTAATGTTCCAGACCCGGATGATTTGTACCCGATTCCGCAAGGAAACGGGTCTAGCGGAGATCAACAAGCTGCTGATGATCAAGATGGAGAGGTAGGGTTGGAGCTGACTCTTGGTCTTGGGTTACCTCCTCTAACCCATCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

254

Amino Acids

27.34

Weight (kDa)

7.56

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 26 - 123 5.8e-20 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67100 AT1G68510
fragaria_vesca FvH4_4g27380
malus_domestica MD16G1042900.v1.1
prunus_persica Prupe.1G311000_v2.0.a1
pyrus_communis pycom16g03700
rosa_chinensis RchiOBHm_Chr4g0435181
rosa_laevigata RLG00000006611
rosa_roxburghii Rroxscaffold_5G00376400
rosa_rugosa Rorug04G0282800
rosa_samantha Rh4AG338600 Rh4BG346700 Rh4CG361300 Rh4DG341100
rosa_wichuraiana Rw4G029530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 6 cut(s) 205, 250, 407, 421, 650, 669
AclWI GGATC 5 cut(s) 155, 302, 391, 437, 450
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 437
AcvI CACGTG 1 cut(s) 475
AfaI GTAC 3 cut(s) 278, 311, 641
AfiI CCNNNNNNNGG 6 cut(s) 311, 342, 355, 395, 493, 494
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 2 cut(s) 265, 380
AhdI GACNNNNNGTC 1 cut(s) 726
AjnI CCWGG 3 cut(s) 354, 438, 479
AluBI AGCT 5 cut(s) 78, 518, 535, 683, 718
AluI AGCT 5 cut(s) 78, 518, 535, 683, 718
AlwI GGATC 5 cut(s) 155, 302, 391, 437, 450
AlwNI CAGNNNCTG 2 cut(s) 135, 575
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 3 cut(s) 202, 211, 554
ApeKI GCWGC 4 cut(s) 78, 111, 359, 683
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 4 cut(s) 333, 346, 484, 555
AsuC2I CCSGG 5 cut(s) 337, 460, 526, 583, 629
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 3 cut(s) 333, 346, 484
BamHI GGATCC 1 cut(s) 442
BbrPI CACGTG 1 cut(s) 475
BbvI GCAGC 4 cut(s) 65, 123, 371, 670
BccI CCATC 3 cut(s) 398, 692, 759
BceAI ACGGC 2 cut(s) 328, 347
BciT130I CCWGG 3 cut(s) 356, 440, 481
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 5 cut(s) 337, 460, 526, 583, 629
BfaI CTAG 1 cut(s) 666
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 5 cut(s) 79, 112, 205, 360, 684
BlsI GCNGC 5 cut(s) 80, 113, 206, 361, 685
Bme1390I CCNGG 8 cut(s) 337, 356, 440, 460, 481, 526, 583, 629
Bme18I GGWCC 3 cut(s) 333, 346, 484
BmeRI GACNNNNNGTC 1 cut(s) 726
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 4 cut(s) 333, 346, 484, 555
BmiI GGNNCC 5 cut(s) 238, 347, 444, 485, 486
BmrFI CCNGG 8 cut(s) 337, 356, 440, 460, 481, 526, 583, 629
BmsI GCATC 3 cut(s) 77, 358, 394
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 5 cut(s) 337, 460, 526, 583, 629
BsaAI YACGTR 1 cut(s) 475
BsaJI CCNNGG 4 cut(s) 336, 459, 480, 492
Bsc4I CCNNNNNNNGG 6 cut(s) 311, 342, 355, 395, 493, 494
Bse118I RCCGGY 1 cut(s) 552
BseBI CCWGG 3 cut(s) 356, 440, 481
BseDI CCNNGG 4 cut(s) 336, 459, 480, 492
BseGI GGATG 3 cut(s) 92, 415, 637
BseLI CCNNNNNNNGG 6 cut(s) 311, 342, 355, 395, 493, 494
BseRI GAGGAG 4 cut(s) 29, 206, 438, 732
BseXI GCAGC 4 cut(s) 65, 123, 371, 670
BseYI CCCAGC 2 cut(s) 241, 342
BsgI GTGCAG 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 204, 213, 556
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 6 cut(s) 336, 459, 526, 553, 582, 629
BsiWI CGTACG 1 cut(s) 309
BslFI GGGAC 4 cut(s) 148, 359, 476, 497
BslI CCNNNNNNNGG 6 cut(s) 311, 342, 355, 395, 493, 494
BsmFI GGGAC 4 cut(s) 148, 359, 476, 497
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 3 cut(s) 204, 213, 556
BsoBI CYCGRG 1 cut(s) 493
Bsp143I GATC 7 cut(s) 126, 147, 294, 383, 442, 673, 691
BspACI CCGC 6 cut(s) 205, 250, 407, 421, 650, 669
BspANI GGCC 3 cut(s) 204, 213, 556
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 5 cut(s) 238, 347, 444, 485, 486
BspPI GGATC 5 cut(s) 155, 302, 391, 437, 450
BsrFI RCCGGY 1 cut(s) 552
BssAI RCCGGY 1 cut(s) 552
BssECI CCNNGG 4 cut(s) 336, 459, 480, 492
BssMI GATC 7 cut(s) 126, 147, 294, 383, 442, 673, 691
Bst2UI CCWGG 3 cut(s) 356, 440, 481
BstAPI GCANNNNNTGC 2 cut(s) 87, 108
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 211, 235
BstEII GGTNACC 1 cut(s) 735
BstF5I GGATG 3 cut(s) 92, 415, 637
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 7 cut(s) 129, 150, 297, 386, 445, 676, 694
BstMBI GATC 7 cut(s) 126, 147, 294, 383, 442, 673, 691
BstMWI GCNNNNNNNGC 5 cut(s) 87, 108, 120, 210, 368
BstNI CCWGG 3 cut(s) 356, 440, 481
BstPI GGTNACC 1 cut(s) 735
BstSCI CCNGG 8 cut(s) 335, 354, 438, 458, 479, 524, 581, 627
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 65, 123, 371, 670
BstX2I RGATCY 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 3 cut(s) 204, 213, 556
BtsCI GGATG 3 cut(s) 92, 415, 637
Cac8I GCNNGC 2 cut(s) 211, 235
CaiI CAGNNNCTG 2 cut(s) 135, 575
CciI TCATGA 1 cut(s) 546
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 552
Cfr13I GGNCC 4 cut(s) 333, 346, 484, 555
Csp6I GTAC 3 cut(s) 277, 310, 640
CviAII CATG 1 cut(s) 547
CviQI GTAC 3 cut(s) 277, 310, 640
DpnI GATC 7 cut(s) 128, 149, 296, 385, 444, 675, 693
DpnII GATC 7 cut(s) 126, 147, 294, 383, 442, 673, 691
DriI GACNNNNNGTC 1 cut(s) 726
EaeI YGGCCR 1 cut(s) 202
Eam1105I GACNNNNNGTC 1 cut(s) 726
EciI GGCGGA 1 cut(s) 239
Eco47I GGWCC 3 cut(s) 333, 346, 484
Eco57I CTGAAG 1 cut(s) 437
Eco72I CACGTG 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 493
Eco91I GGTNACC 1 cut(s) 735
EcoO109I RGGNCCY 1 cut(s) 484
EcoO65I GGTNACC 1 cut(s) 735
EcoRII CCWGG 3 cut(s) 354, 438, 479
FaeI CATG 1 cut(s) 550
FaiI YATR 5 cut(s) 201, 395, 467, 510, 548
FaqI GGGAC 4 cut(s) 148, 359, 476, 497
FatI CATG 1 cut(s) 546
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 5 cut(s) 79, 112, 205, 360, 684
FokI GGATG 3 cut(s) 99, 422, 644
Fsp4HI GCNGC 5 cut(s) 79, 112, 205, 360, 684
FspBI CTAG 1 cut(s) 666
GlaI GCGC 1 cut(s) 208
GluI GCNGC 5 cut(s) 79, 112, 205, 360, 684
GsaI CCCAGC 2 cut(s) 245, 346
HaeIII GGCC 3 cut(s) 204, 213, 556
HapII CCGG 6 cut(s) 336, 459, 526, 553, 582, 629
HhaI GCGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 5 cut(s) 161, 430, 572, 646, 721
HpaII CCGG 6 cut(s) 336, 459, 526, 553, 582, 629
Hpy166II GTNNAC 2 cut(s) 290, 301
Hpy188I TCNGA 3 cut(s) 131, 160, 435
Hpy188III TCNNGA 6 cut(s) 298, 377, 538, 547, 623, 695
Hpy8I GTNNAC 2 cut(s) 290, 301
Hpy99I CGWCG 2 cut(s) 119, 310
HpyAV CCTTC 1 cut(s) 374
HpyCH4IV ACGT 2 cut(s) 308, 474
HpyCH4V TGCA 6 cut(s) 81, 90, 111, 138, 371, 578
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 108, 120, 210, 368
HpySE526I ACGT 2 cut(s) 308, 474
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 1 cut(s) 207
KflI GGGWCCC 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 7 cut(s) 126, 147, 294, 383, 442, 673, 691
LmnI GCTCC 2 cut(s) 242, 715
Lsp1109I GCAGC 4 cut(s) 65, 123, 371, 670
LweI GCATC 3 cut(s) 77, 358, 394
MaeI CTAG 1 cut(s) 666
MaeII ACGT 2 cut(s) 308, 474
MaeIII GTNAC 1 cut(s) 735
MalI GATC 7 cut(s) 128, 149, 296, 385, 444, 675, 693
MboI GATC 7 cut(s) 126, 147, 294, 383, 442, 673, 691
MflI RGATCY 1 cut(s) 442
MluCI AATT 3 cut(s) 194, 399, 757
MlyI GAGTC 2 cut(s) 170, 715
MmeI TCCRAC 2 cut(s) 589, 693
MseI TTAA 3 cut(s) 21, 756, 760
MspI CCGG 6 cut(s) 336, 459, 526, 553, 582, 629
MspR9I CCNGG 8 cut(s) 337, 356, 440, 460, 481, 526, 583, 629
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 3 cut(s) 356, 440, 481
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 5 cut(s) 87, 108, 120, 210, 368
NciI CCSGG 5 cut(s) 337, 460, 526, 583, 629
NdeII GATC 7 cut(s) 126, 147, 294, 383, 442, 673, 691
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 5 cut(s) 238, 347, 444, 485, 486
PacI TTAATTAA 1 cut(s) 760
PagI TCATGA 1 cut(s) 546
PctI GAATGC 1 cut(s) 125
PfeI GAWTC 3 cut(s) 430, 572, 646
Pfl23II CGTACG 1 cut(s) 309
PkrI GCNGC 5 cut(s) 80, 113, 206, 361, 685
PleI GAGTC 2 cut(s) 169, 715
PmaCI CACGTG 1 cut(s) 475
PmlI CACGTG 1 cut(s) 475
PpsI GAGTC 2 cut(s) 169, 715
Ppu21I YACGTR 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 484
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 354, 438, 479
PspCI CACGTG 1 cut(s) 475
PspEI GGTNACC 1 cut(s) 735
PspFI CCCAGC 2 cut(s) 241, 342
PspGI CCWGG 3 cut(s) 354, 438, 479
PspLI CGTACG 1 cut(s) 309
PspN4I GGNNCC 5 cut(s) 238, 347, 444, 485, 486
PspPI GGNCC 4 cut(s) 333, 346, 484, 555
PspPPI RGGWCCY 1 cut(s) 484
PsrI GAACNNNNNNTAC 2 cut(s) 293, 325
PstNI CAGNNNCTG 2 cut(s) 135, 575
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 3 cut(s) 278, 311, 641
RsaNI GTAC 3 cut(s) 277, 310, 640
SaqAI TTAA 3 cut(s) 21, 756, 760
SatI GCNGC 5 cut(s) 79, 112, 205, 360, 684
Sau3AI GATC 7 cut(s) 126, 147, 294, 383, 442, 673, 691
Sau96I GGNCC 4 cut(s) 333, 346, 484, 555
SchI GAGTC 2 cut(s) 170, 715
ScrFI CCNGG 8 cut(s) 337, 356, 440, 460, 481, 526, 583, 629
SfaNI GCATC 3 cut(s) 77, 358, 394
SfiI GGCCNNNNNGGCC 1 cut(s) 210
SinI GGWCC 3 cut(s) 333, 346, 484
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 3 cut(s) 194, 399, 757
SsiI CCGC 6 cut(s) 205, 250, 407, 421, 650, 669
SspMI CTAG 1 cut(s) 666
StyD4I CCNGG 8 cut(s) 335, 354, 438, 458, 479, 524, 581, 627
TaiI ACGT 2 cut(s) 311, 477
TasI AATT 3 cut(s) 194, 399, 757
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 3 cut(s) 430, 572, 646
Tru1I TTAA 3 cut(s) 21, 756, 760
Tru9I TTAA 3 cut(s) 21, 756, 760
TseI GCWGC 4 cut(s) 78, 111, 359, 683
TspDTI ATGAA 2 cut(s) 535, 563
TspGWI ACGGA 2 cut(s) 99, 307
VpaK11BI GGWCC 3 cut(s) 333, 346, 484
XapI RAATTY 1 cut(s) 194
XspI CTAG 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.