AT1G67320

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
25205279 .. 25209101
3823 bp
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UTR
Exon/CDS
Intron
AT1G67320.2

Sequence Viewer

Length: 1350 bp
ATGGAAGTGATACGCTCTCAGAAGCGAACAGTCTCCAACGACGTCGTTTCAACTCCCACGCTTCCTCTGTATCTTACAGCTCCACACATGGAAGTCCGCTTAGAAGAGTTTGAGCTCTTCGCCATCGATCGCTTACGAGTTCTTAAAGGAGTCTCAGATGGATTAGCTCGTGCACGAAACCCTAACGAAATGGATGATCTTGTAGAGACTTTGTGGAAAGAACATATGAGACTTTCGAATGTTTCAGAAATGATCAATAAGGATATAATCTCGCATTTTGTTCTTCGTCTCGTTTATTGTAGATCGGATGAATTGAAGAAATGGTTTCTTAGCATGGAAACCGCGCTTTTCCGCCATAGATTCCGGCTTAAAAAGATTGAAGAACAGAGAGCAATTGTGGGAGAATTTGGACTACCGTATAAGGCAGTCATAGGTGCAGAACTTGAGAGTTTGAAGGAGAGGTTGGGGCTAGTTGCGCGTTCACATGGTCAAATTTCTTCTGATGTTGAAAACATTTACTACAAGGTTCCTTTTGAAGAGGTTCCTGACCTTGTAGCTAGTCGGAGAGTATTATTACAGAAAGGGTTTGCCTTTGTAGCTGGTACTCAGTTGGTTTCCCTTGTTGTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAGAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCAATCGTAGAAGCGTTATCTACAAGCTACTTGGGTCCTGATTATTCTCAATCAAATGAGTACGCTGACATATCACTTAAGGATATTGATCAAGTTTCCAAGAGTTCCTTCCCCCTTTGTATGAGGCATCTATTTGAAAAACTTCGAGAAGATCACCATCTAAAACATGGAGGAAGAATGCAACTGGGTCTCTTTTTGAAGTTGGATGACGCCTTAGCGTTTTGGAGAGAAGAATTTACAAAAAAGGTTGGCTCTGAGAGATTTGATAAAGAGTATGCGTATGCCATTCGCCATAACTATGGGAAGGAAGGCAAGAGAACAGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGTGAGGATAACCTGAAAGCAGCACTTAGTAGAATGGGATTGAGTTCTCGTGGTATGGAAGACGTAATGGATAAAGTGCGGAACAGACATTATCAGCTCGCATGCACCTTAACCTTTGAAGCTGTTTATGGTACATCATGTGATACTGGTATCAACCATCCCAACCAATACTTTGAAGAAAGTCAGAAGATTCTGAAATCCAAGACTCCAGCTGCTCCGGTTTAA

Protein Analysis

449

Amino Acids

51.62

Weight (kDa)

8.78

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_primase_lrg_N PF26466 26 - 228 5.9e-65 Eukaryotic and archaeal DNA primase, large subunit N-terminal domain
DNA_primase_lrg PF04104 270 - 438 3.2e-68 Eukaryotic and archaeal DNA primase, large subunit C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013193)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccII CGCG 2 cut(s) 344, 478
AciI CCGC 4 cut(s) 97, 342, 352, 1204
AclWI GGATC 1 cut(s) 1104
AcsI RAATTY 3 cut(s) 404, 492, 953
AcyI GRCGYC 2 cut(s) 42, 930
AfaI GTAC 3 cut(s) 604, 782, 1258
AfiI CCNNNNNNNGG 1 cut(s) 1091
AflII CTTAAG 1 cut(s) 797
AjnI CCWGG 1 cut(s) 1084
AjuI GAANNNNNNNTTGG 4 cut(s) 446, 478, 812, 844
AluBI AGCT 9 cut(s) 80, 115, 167, 557, 599, 747, 1222, 1247, 1337
AluI AGCT 9 cut(s) 80, 115, 167, 557, 599, 747, 1222, 1247, 1337
Alw21I GWGCWC 2 cut(s) 117, 175
Alw26I GTCTC 6 cut(s) 37, 157, 200, 223, 293, 914
Alw44I GTGCAC 1 cut(s) 171
AlwI GGATC 1 cut(s) 1104
AoxI GGCC 1 cut(s) 654
ApaLI GTGCAC 1 cut(s) 171
ApeKI GCWGC 3 cut(s) 1107, 1145, 1337
ApoI RAATTY 3 cut(s) 404, 492, 953
Asp700I GAANNNNTTC 2 cut(s) 540, 861
AspLEI GCGC 2 cut(s) 346, 478
AspS9I GGNCC 2 cut(s) 655, 755
AsuHPI GGTGA 1 cut(s) 866
AsuII TTCGAA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 117
BauI CACGAG 2 cut(s) 168, 1173
BbsI GAAGAC 1 cut(s) 1191
Bbv12I GWGCWC 2 cut(s) 117, 175
BbvI GCAGC 3 cut(s) 1094, 1157, 1324
BccI CCATC 4 cut(s) 131, 152, 885, 1290
BceAI ACGGC 1 cut(s) 1120
BciT130I CCWGG 1 cut(s) 1086
BclI TGATCA 2 cut(s) 252, 808
BcoDI GTCTC 6 cut(s) 37, 157, 200, 223, 293, 914
BfaI CTAG 2 cut(s) 470, 558
BfrI CTTAAG 1 cut(s) 797
BisI GCNGC 3 cut(s) 1108, 1146, 1338
BlsI GCNGC 3 cut(s) 1109, 1147, 1339
Bme1390I CCNGG 1 cut(s) 1086
Bme18I GGWCC 1 cut(s) 755
BmgT120I GGNCC 2 cut(s) 655, 755
BmiI GGNNCC 3 cut(s) 528, 543, 756
BmrFI CCNGG 1 cut(s) 1086
BmrI ACTGGG 1 cut(s) 914
BmsI GCATC 1 cut(s) 856
BmuI ACTGGG 1 cut(s) 914
BpiI GAAGAC 1 cut(s) 1191
BpmI CTGGAG 1 cut(s) 1317
Bpu10I CCTNAGC 1 cut(s) 934
Bpu14I TTCGAA 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 464
Bsa29I ATCGAT 1 cut(s) 126
BsaBI GATNNNNATC 2 cut(s) 807, 876
BsaHI GRCGYC 2 cut(s) 42, 930
BsaI GGTCTC 1 cut(s) 914
BsaWI WCCGGW 1 cut(s) 1342
BsaXI ACNNNNNCTCC 2 cut(s) 1066, 1096
Bsc4I CCNNNNNNNGG 1 cut(s) 1091
Bse1I ACTGG 2 cut(s) 909, 1276
Bse8I GATNNNNATC 2 cut(s) 807, 876
BseBI CCWGG 1 cut(s) 1086
BseCI ATCGAT 1 cut(s) 126
BseGI GGATG 4 cut(s) 199, 313, 931, 1282
BseJI GATNNNNATC 2 cut(s) 807, 876
BseLI CCNNNNNNNGG 1 cut(s) 1091
BseMII CTCAG 4 cut(s) 32, 168, 620, 966
BseNI ACTGG 2 cut(s) 909, 1276
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 3 cut(s) 1094, 1157, 1324
BseYI CCCAGC 1 cut(s) 1091
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 2 cut(s) 344, 478
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 117, 175
BsiSI CCGG 2 cut(s) 364, 1343
BslI CCNNNNNNNGG 1 cut(s) 1091
BsmAI GTCTC 6 cut(s) 37, 157, 200, 223, 293, 914
BsmBI CGTCTC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 903
BsnI GGCC 1 cut(s) 656
Bso31I GGTCTC 1 cut(s) 914
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 117, 175
Bsp143I GATC 9 cut(s) 127, 196, 252, 302, 638, 808, 871, 1068, 1096
BspACI CCGC 4 cut(s) 97, 342, 352, 1204
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 4 cut(s) 31, 167, 619, 967
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 2 cut(s) 344, 478
BspLI GGNNCC 3 cut(s) 528, 543, 756
BspPI GGATC 1 cut(s) 1104
BspQI GCTCTTC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 914
BsrI ACTGG 2 cut(s) 909, 1276
BssMI GATC 9 cut(s) 127, 196, 252, 302, 638, 808, 871, 1068, 1096
BssNI GRCGYC 2 cut(s) 42, 930
BssSI CACGAG 2 cut(s) 168, 1173
Bst2BI CACGAG 2 cut(s) 168, 1173
Bst2UI CCWGG 1 cut(s) 1086
Bst4CI ACNGT 2 cut(s) 31, 417
Bst6I CTCTTC 3 cut(s) 99, 122, 531
BstACI GRCGYC 2 cut(s) 42, 930
BstAFI CTTAAG 1 cut(s) 797
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 1224, 1228
BstDEI CTNAG 8 cut(s) 18, 100, 154, 329, 606, 934, 975, 1151
BstF5I GGATG 4 cut(s) 199, 313, 931, 1282
BstFNI CGCG 2 cut(s) 344, 478
BstHHI GCGC 2 cut(s) 346, 478
BstKTI GATC 9 cut(s) 130, 199, 255, 305, 641, 811, 874, 1071, 1099
BstMAI GTCTC 6 cut(s) 37, 157, 200, 223, 293, 914
BstMBI GATC 9 cut(s) 127, 196, 252, 302, 638, 808, 871, 1068, 1096
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 475, 596, 1088
BstNI CCWGG 1 cut(s) 1086
BstNSI RCATGY 1 cut(s) 1230
BstSCI CCNGG 1 cut(s) 1084
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 2 cut(s) 344, 478
BstV1I GCAGC 3 cut(s) 1094, 1157, 1324
BstV2I GAAGAC 1 cut(s) 1191
BstXI CCANNNNNNTGG 1 cut(s) 1019
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 656
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 4 cut(s) 199, 313, 931, 1282
BtsIMutI CAGTG 1 cut(s) 1132
Cac8I GCNNGC 2 cut(s) 1224, 1228
CfoI GCGC 2 cut(s) 346, 478
Cfr13I GGNCC 2 cut(s) 655, 755
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 938
Csp6I GTAC 3 cut(s) 603, 781, 1257
CviAII CATG 6 cut(s) 88, 334, 485, 887, 1227, 1263
CviQI GTAC 3 cut(s) 603, 781, 1257
DdeI CTNAG 8 cut(s) 18, 100, 154, 329, 606, 934, 975, 1151
DpnI GATC 9 cut(s) 129, 198, 254, 304, 640, 810, 873, 1070, 1098
DpnII GATC 9 cut(s) 127, 196, 252, 302, 638, 808, 871, 1068, 1096
Eam1104I CTCTTC 3 cut(s) 99, 122, 531
EarI CTCTTC 3 cut(s) 99, 122, 531
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 914
Eco47I GGWCC 1 cut(s) 755
Eco53kI GAGCTC 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 115
EcoO109I RGGNCCY 2 cut(s) 655, 755
EcoRII CCWGG 1 cut(s) 1084
EcoT38I GRGCYC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 6 cut(s) 91, 337, 488, 890, 1230, 1266
FalI AAGNNNNNCTT 4 cut(s) 812, 844, 1134, 1166
FatI CATG 6 cut(s) 87, 333, 484, 886, 1226, 1262
FauNDI CATATG 1 cut(s) 225
FbaI TGATCA 2 cut(s) 252, 808
Fnu4HI GCNGC 3 cut(s) 1108, 1146, 1338
FokI GGATG 4 cut(s) 206, 320, 938, 1269
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 3 cut(s) 1108, 1146, 1338
FspBI CTAG 2 cut(s) 470, 558
GlaI GCGC 2 cut(s) 345, 477
GluI GCNGC 3 cut(s) 1108, 1146, 1338
GsaI CCCAGC 1 cut(s) 1095
GsuI CTGGAG 1 cut(s) 1317
HaeIII GGCC 1 cut(s) 656
HapII CCGG 2 cut(s) 364, 1343
HgaI GACGC 1 cut(s) 938
HhaI GCGC 2 cut(s) 346, 478
Hin1I GRCGYC 2 cut(s) 42, 930
Hin1II CATG 6 cut(s) 91, 337, 488, 890, 1230, 1266
Hin6I GCGC 2 cut(s) 344, 476
HinP1I GCGC 2 cut(s) 344, 476
HinfI GANTC 4 cut(s) 150, 360, 1315, 1330
HpaII CCGG 2 cut(s) 364, 1343
HphI GGTGA 1 cut(s) 866
Hpy166II GTNNAC 3 cut(s) 173, 482, 681
Hpy188I TCNGA 9 cut(s) 21, 157, 247, 307, 502, 564, 976, 1311, 1320
Hpy188III TCNNGA 4 cut(s) 545, 695, 758, 866
Hpy8I GTNNAC 3 cut(s) 173, 482, 681
Hpy99I CGWCG 2 cut(s) 44, 47
HpyAV CCTTC 4 cut(s) 448, 838, 1018, 1022
HpyCH4III ACNGT 2 cut(s) 31, 417
HpyCH4IV ACGT 2 cut(s) 42, 1188
HpyCH4V TGCA 4 cut(s) 173, 437, 901, 1230
HpyF10VI GCNNNNNNNGC 3 cut(s) 475, 596, 1088
HpyF3I CTNAG 8 cut(s) 18, 100, 154, 329, 606, 934, 975, 1151
HpySE526I ACGT 2 cut(s) 42, 1188
Hsp92I GRCGYC 2 cut(s) 42, 930
Hsp92II CATG 6 cut(s) 91, 337, 488, 890, 1230, 1266
HspAI GCGC 2 cut(s) 344, 476
Ksp22I TGATCA 2 cut(s) 252, 808
Kzo9I GATC 9 cut(s) 127, 196, 252, 302, 638, 808, 871, 1068, 1096
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 3 cut(s) 85, 1087, 1345
Lsp1109I GCAGC 3 cut(s) 1094, 1157, 1324
LweI GCATC 1 cut(s) 856
MaeI CTAG 2 cut(s) 470, 558
MaeII ACGT 2 cut(s) 42, 1188
MaeIII GTNAC 1 cut(s) 625
MalI GATC 9 cut(s) 129, 198, 254, 304, 640, 810, 873, 1070, 1098
MboI GATC 9 cut(s) 127, 196, 252, 302, 638, 808, 871, 1068, 1096
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 2 cut(s) 117, 175
MluCI AATT 6 cut(s) 311, 393, 404, 492, 632, 953
MlyI GAGTC 2 cut(s) 159, 1324
MmeI TCCRAC 3 cut(s) 60, 542, 903
MnlI CCTC 7 cut(s) 75, 453, 532, 668, 837, 884, 1123
MroXI GAANNNNTTC 2 cut(s) 540, 861
MseI TTAA 5 cut(s) 144, 369, 798, 1235, 1348
MslI CAYNNNNRTG 2 cut(s) 1017, 1125
MspA1I CMGCKG 1 cut(s) 1337
MspCI CTTAAG 1 cut(s) 797
MspI CCGG 2 cut(s) 364, 1343
MspR9I CCNGG 1 cut(s) 1086
MunI CAATTG 1 cut(s) 393
Mva1269I GAATGC 1 cut(s) 903
MvaI CCWGG 1 cut(s) 1086
MvnI CGCG 2 cut(s) 344, 478
MwoI GCNNNNNNNGC 3 cut(s) 475, 596, 1088
NdeI CATATG 1 cut(s) 225
NdeII GATC 9 cut(s) 127, 196, 252, 302, 638, 808, 871, 1068, 1096
NlaIII CATG 6 cut(s) 91, 337, 488, 890, 1230, 1266
NlaIV GGNNCC 3 cut(s) 528, 543, 756
NmuCI GTSAC 1 cut(s) 625
NspI RCATGY 1 cut(s) 1230
NspV TTCGAA 1 cut(s) 236
PaeI GCATGC 1 cut(s) 1230
PciSI GCTCTTC 1 cut(s) 122
PctI GAATGC 1 cut(s) 903
PdmI GAANNNNTTC 2 cut(s) 540, 861
PfeI GAWTC 2 cut(s) 360, 1315
PkrI GCNGC 3 cut(s) 1109, 1147, 1339
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 2 cut(s) 158, 1324
PpsI GAGTC 2 cut(s) 158, 1324
PpuMI RGGWCCY 1 cut(s) 755
Psp124BI GAGCTC 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 755
Psp6I CCWGG 1 cut(s) 1084
PspFI CCCAGC 1 cut(s) 1091
PspGI CCWGG 1 cut(s) 1084
PspN4I GGNNCC 3 cut(s) 528, 543, 756
PspPI GGNCC 2 cut(s) 655, 755
PspPPI RGGWCCY 1 cut(s) 755
PsrI GAACNNNNNNTAC 2 cut(s) 1030, 1062
PvuI CGATCG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 1337
RsaI GTAC 3 cut(s) 604, 782, 1258
RsaNI GTAC 3 cut(s) 603, 781, 1257
RseI CAYNNNNRTG 2 cut(s) 1017, 1125
SacI GAGCTC 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 5 cut(s) 144, 369, 798, 1235, 1348
SatI GCNGC 3 cut(s) 1108, 1146, 1338
Sau3AI GATC 9 cut(s) 127, 196, 252, 302, 638, 808, 871, 1068, 1096
Sau96I GGNCC 2 cut(s) 655, 755
SchI GAGTC 2 cut(s) 159, 1324
ScrFI CCNGG 1 cut(s) 1086
SduI GDGCHC 2 cut(s) 117, 175
SfaNI GCATC 1 cut(s) 856
SfuI TTCGAA 1 cut(s) 236
SinI GGWCC 1 cut(s) 755
SmiMI CAYNNNNRTG 2 cut(s) 1017, 1125
SmlI CTYRAG 2 cut(s) 443, 797
SmoI CTYRAG 2 cut(s) 443, 797
SphI GCATGC 1 cut(s) 1230
Sse9I AATT 6 cut(s) 311, 393, 404, 492, 632, 953
SsiI CCGC 4 cut(s) 97, 342, 352, 1204
SspMI CTAG 2 cut(s) 470, 558
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 1084
TaaI ACNGT 2 cut(s) 31, 417
TaiI ACGT 2 cut(s) 45, 1191
TaqI TCGA 6 cut(s) 126, 236, 637, 694, 865, 1117
TasI AATT 6 cut(s) 311, 393, 404, 492, 632, 953
TfiI GAWTC 2 cut(s) 360, 1315
Tru1I TTAA 5 cut(s) 144, 369, 798, 1235, 1348
Tru9I TTAA 5 cut(s) 144, 369, 798, 1235, 1348
TscAI CASTG 1 cut(s) 1132
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 3 cut(s) 1107, 1145, 1337
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 1 cut(s) 1132
Vha464I CTTAAG 1 cut(s) 797
VneI GTGCAC 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 755
XapI RAATTY 3 cut(s) 404, 492, 953
XceI RCATGY 1 cut(s) 1230
XcmI CCANNNNNNNNNTGG 1 cut(s) 884
XmnI GAANNNNTTC 2 cut(s) 540, 861
XspI CTAG 2 cut(s) 470, 558
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.