DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67320 AT1G67320 |
| fragaria_vesca | FvH4_4g14550 FvH4_4g14550 FvH4_4g14550 |
| malus_domestica | MD09G1083700.v1.1 MD13G1121900.v1.1 MD16G1122200.v1.1 |
| prunus_persica | Prupe.1G223400_v2.0.a1 |
| pyrus_communis | pycom13g10610 |
| rosa_chinensis | RchiOBHm_Chr4g0418271 |
| rosa_laevigata | RLG00000007881 |
| rosa_multiflora | Rmu_sc0000032.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00361450 |
| rosa_rugosa | Rorug04G0151600 |
| rosa_samantha | Rh4AG213200 Rh4CG224900 |
| rosa_wichuraiana | Rw4G018110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 45 |
| AccII | CGCG | 2 cut(s) | 344, 478 |
| AciI | CCGC | 4 cut(s) | 97, 342, 352, 1204 |
| AclWI | GGATC | 1 cut(s) | 1104 |
| AcsI | RAATTY | 3 cut(s) | 404, 492, 953 |
| AcyI | GRCGYC | 2 cut(s) | 42, 930 |
| AfaI | GTAC | 3 cut(s) | 604, 782, 1258 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| AflII | CTTAAG | 1 cut(s) | 797 |
| AjnI | CCWGG | 1 cut(s) | 1084 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 446, 478, 812, 844 |
| AluBI | AGCT | 9 cut(s) | 80, 115, 167, 557, 599, 747, 1222, 1247, 1337 |
| AluI | AGCT | 9 cut(s) | 80, 115, 167, 557, 599, 747, 1222, 1247, 1337 |
| Alw21I | GWGCWC | 2 cut(s) | 117, 175 |
| Alw26I | GTCTC | 6 cut(s) | 37, 157, 200, 223, 293, 914 |
| Alw44I | GTGCAC | 1 cut(s) | 171 |
| AlwI | GGATC | 1 cut(s) | 1104 |
| AoxI | GGCC | 1 cut(s) | 654 |
| ApaLI | GTGCAC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 3 cut(s) | 1107, 1145, 1337 |
| ApoI | RAATTY | 3 cut(s) | 404, 492, 953 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 540, 861 |
| AspLEI | GCGC | 2 cut(s) | 346, 478 |
| AspS9I | GGNCC | 2 cut(s) | 655, 755 |
| AsuHPI | GGTGA | 1 cut(s) | 866 |
| AsuII | TTCGAA | 1 cut(s) | 236 |
| AvaII | GGWCC | 1 cut(s) | 755 |
| BaeGI | GKGCMC | 1 cut(s) | 175 |
| BanII | GRGCYC | 1 cut(s) | 117 |
| BauI | CACGAG | 2 cut(s) | 168, 1173 |
| BbsI | GAAGAC | 1 cut(s) | 1191 |
| Bbv12I | GWGCWC | 2 cut(s) | 117, 175 |
| BbvI | GCAGC | 3 cut(s) | 1094, 1157, 1324 |
| BccI | CCATC | 4 cut(s) | 131, 152, 885, 1290 |
| BceAI | ACGGC | 1 cut(s) | 1120 |
| BciT130I | CCWGG | 1 cut(s) | 1086 |
| BclI | TGATCA | 2 cut(s) | 252, 808 |
| BcoDI | GTCTC | 6 cut(s) | 37, 157, 200, 223, 293, 914 |
| BfaI | CTAG | 2 cut(s) | 470, 558 |
| BfrI | CTTAAG | 1 cut(s) | 797 |
| BisI | GCNGC | 3 cut(s) | 1108, 1146, 1338 |
| BlsI | GCNGC | 3 cut(s) | 1109, 1147, 1339 |
| Bme1390I | CCNGG | 1 cut(s) | 1086 |
| Bme18I | GGWCC | 1 cut(s) | 755 |
| BmgT120I | GGNCC | 2 cut(s) | 655, 755 |
| BmiI | GGNNCC | 3 cut(s) | 528, 543, 756 |
| BmrFI | CCNGG | 1 cut(s) | 1086 |
| BmrI | ACTGGG | 1 cut(s) | 914 |
| BmsI | GCATC | 1 cut(s) | 856 |
| BmuI | ACTGGG | 1 cut(s) | 914 |
| BpiI | GAAGAC | 1 cut(s) | 1191 |
| BpmI | CTGGAG | 1 cut(s) | 1317 |
| Bpu10I | CCTNAGC | 1 cut(s) | 934 |
| Bpu14I | TTCGAA | 1 cut(s) | 236 |
| BpuEI | CTTGAG | 1 cut(s) | 464 |
| Bsa29I | ATCGAT | 1 cut(s) | 126 |
| BsaBI | GATNNNNATC | 2 cut(s) | 807, 876 |
| BsaHI | GRCGYC | 2 cut(s) | 42, 930 |
| BsaI | GGTCTC | 1 cut(s) | 914 |
| BsaWI | WCCGGW | 1 cut(s) | 1342 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1066, 1096 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1091 |
| Bse1I | ACTGG | 2 cut(s) | 909, 1276 |
| Bse8I | GATNNNNATC | 2 cut(s) | 807, 876 |
| BseBI | CCWGG | 1 cut(s) | 1086 |
| BseCI | ATCGAT | 1 cut(s) | 126 |
| BseGI | GGATG | 4 cut(s) | 199, 313, 931, 1282 |
| BseJI | GATNNNNATC | 2 cut(s) | 807, 876 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| BseMII | CTCAG | 4 cut(s) | 32, 168, 620, 966 |
| BseNI | ACTGG | 2 cut(s) | 909, 1276 |
| BseSI | GKGCMC | 1 cut(s) | 175 |
| BseXI | GCAGC | 3 cut(s) | 1094, 1157, 1324 |
| BseYI | CCCAGC | 1 cut(s) | 1091 |
| BsgI | GTGCAG | 1 cut(s) | 456 |
| Bsh1236I | CGCG | 2 cut(s) | 344, 478 |
| Bsh1285I | CGRYCG | 1 cut(s) | 130 |
| BshFI | GGCC | 1 cut(s) | 656 |
| BshVI | ATCGAT | 1 cut(s) | 126 |
| BsiEI | CGRYCG | 1 cut(s) | 130 |
| BsiHKAI | GWGCWC | 2 cut(s) | 117, 175 |
| BsiSI | CCGG | 2 cut(s) | 364, 1343 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| BsmAI | GTCTC | 6 cut(s) | 37, 157, 200, 223, 293, 914 |
| BsmBI | CGTCTC | 1 cut(s) | 293 |
| BsmI | GAATGC | 1 cut(s) | 903 |
| BsnI | GGCC | 1 cut(s) | 656 |
| Bso31I | GGTCTC | 1 cut(s) | 914 |
| Bsp119I | TTCGAA | 1 cut(s) | 236 |
| Bsp1286I | GDGCHC | 2 cut(s) | 117, 175 |
| Bsp143I | GATC | 9 cut(s) | 127, 196, 252, 302, 638, 808, 871, 1068, 1096 |
| BspACI | CCGC | 4 cut(s) | 97, 342, 352, 1204 |
| BspANI | GGCC | 1 cut(s) | 656 |
| BspCNI | CTCAG | 4 cut(s) | 31, 167, 619, 967 |
| BspDI | ATCGAT | 1 cut(s) | 126 |
| BspFNI | CGCG | 2 cut(s) | 344, 478 |
| BspLI | GGNNCC | 3 cut(s) | 528, 543, 756 |
| BspPI | GGATC | 1 cut(s) | 1104 |
| BspQI | GCTCTTC | 1 cut(s) | 122 |
| BspT104I | TTCGAA | 1 cut(s) | 236 |
| BspTI | CTTAAG | 1 cut(s) | 797 |
| BspTNI | GGTCTC | 1 cut(s) | 914 |
| BsrI | ACTGG | 2 cut(s) | 909, 1276 |
| BssMI | GATC | 9 cut(s) | 127, 196, 252, 302, 638, 808, 871, 1068, 1096 |
| BssNI | GRCGYC | 2 cut(s) | 42, 930 |
| BssSI | CACGAG | 2 cut(s) | 168, 1173 |
| Bst2BI | CACGAG | 2 cut(s) | 168, 1173 |
| Bst2UI | CCWGG | 1 cut(s) | 1086 |
| Bst4CI | ACNGT | 2 cut(s) | 31, 417 |
| Bst6I | CTCTTC | 3 cut(s) | 99, 122, 531 |
| BstACI | GRCGYC | 2 cut(s) | 42, 930 |
| BstAFI | CTTAAG | 1 cut(s) | 797 |
| BstBI | TTCGAA | 1 cut(s) | 236 |
| BstC8I | GCNNGC | 2 cut(s) | 1224, 1228 |
| BstDEI | CTNAG | 8 cut(s) | 18, 100, 154, 329, 606, 934, 975, 1151 |
| BstF5I | GGATG | 4 cut(s) | 199, 313, 931, 1282 |
| BstFNI | CGCG | 2 cut(s) | 344, 478 |
| BstHHI | GCGC | 2 cut(s) | 346, 478 |
| BstKTI | GATC | 9 cut(s) | 130, 199, 255, 305, 641, 811, 874, 1071, 1099 |
| BstMAI | GTCTC | 6 cut(s) | 37, 157, 200, 223, 293, 914 |
| BstMBI | GATC | 9 cut(s) | 127, 196, 252, 302, 638, 808, 871, 1068, 1096 |
| BstMCI | CGRYCG | 1 cut(s) | 130 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 475, 596, 1088 |
| BstNI | CCWGG | 1 cut(s) | 1086 |
| BstNSI | RCATGY | 1 cut(s) | 1230 |
| BstSCI | CCNGG | 1 cut(s) | 1084 |
| BstSLI | GKGCMC | 1 cut(s) | 175 |
| BstUI | CGCG | 2 cut(s) | 344, 478 |
| BstV1I | GCAGC | 3 cut(s) | 1094, 1157, 1324 |
| BstV2I | GAAGAC | 1 cut(s) | 1191 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1019 |
| Bsu15I | ATCGAT | 1 cut(s) | 126 |
| BsuRI | GGCC | 1 cut(s) | 656 |
| BsuTUI | ATCGAT | 1 cut(s) | 126 |
| BtsCI | GGATG | 4 cut(s) | 199, 313, 931, 1282 |
| BtsIMutI | CAGTG | 1 cut(s) | 1132 |
| Cac8I | GCNNGC | 2 cut(s) | 1224, 1228 |
| CfoI | GCGC | 2 cut(s) | 346, 478 |
| Cfr13I | GGNCC | 2 cut(s) | 655, 755 |
| ClaI | ATCGAT | 1 cut(s) | 126 |
| CseI | GACGC | 1 cut(s) | 938 |
| Csp6I | GTAC | 3 cut(s) | 603, 781, 1257 |
| CviAII | CATG | 6 cut(s) | 88, 334, 485, 887, 1227, 1263 |
| CviQI | GTAC | 3 cut(s) | 603, 781, 1257 |
| DdeI | CTNAG | 8 cut(s) | 18, 100, 154, 329, 606, 934, 975, 1151 |
| DpnI | GATC | 9 cut(s) | 129, 198, 254, 304, 640, 810, 873, 1070, 1098 |
| DpnII | GATC | 9 cut(s) | 127, 196, 252, 302, 638, 808, 871, 1068, 1096 |
| Eam1104I | CTCTTC | 3 cut(s) | 99, 122, 531 |
| EarI | CTCTTC | 3 cut(s) | 99, 122, 531 |
| EciI | GGCGGA | 1 cut(s) | 341 |
| Ecl136II | GAGCTC | 1 cut(s) | 115 |
| Eco24I | GRGCYC | 1 cut(s) | 117 |
| Eco31I | GGTCTC | 1 cut(s) | 914 |
| Eco47I | GGWCC | 1 cut(s) | 755 |
| Eco53kI | GAGCTC | 1 cut(s) | 115 |
| EcoICRI | GAGCTC | 1 cut(s) | 115 |
| EcoO109I | RGGNCCY | 2 cut(s) | 655, 755 |
| EcoRII | CCWGG | 1 cut(s) | 1084 |
| EcoT38I | GRGCYC | 1 cut(s) | 117 |
| Esp3I | CGTCTC | 1 cut(s) | 293 |
| FaeI | CATG | 6 cut(s) | 91, 337, 488, 890, 1230, 1266 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 812, 844, 1134, 1166 |
| FatI | CATG | 6 cut(s) | 87, 333, 484, 886, 1226, 1262 |
| FauNDI | CATATG | 1 cut(s) | 225 |
| FbaI | TGATCA | 2 cut(s) | 252, 808 |
| Fnu4HI | GCNGC | 3 cut(s) | 1108, 1146, 1338 |
| FokI | GGATG | 4 cut(s) | 206, 320, 938, 1269 |
| FriOI | GRGCYC | 1 cut(s) | 117 |
| Fsp4HI | GCNGC | 3 cut(s) | 1108, 1146, 1338 |
| FspBI | CTAG | 2 cut(s) | 470, 558 |
| GlaI | GCGC | 2 cut(s) | 345, 477 |
| GluI | GCNGC | 3 cut(s) | 1108, 1146, 1338 |
| GsaI | CCCAGC | 1 cut(s) | 1095 |
| GsuI | CTGGAG | 1 cut(s) | 1317 |
| HaeIII | GGCC | 1 cut(s) | 656 |
| HapII | CCGG | 2 cut(s) | 364, 1343 |
| HgaI | GACGC | 1 cut(s) | 938 |
| HhaI | GCGC | 2 cut(s) | 346, 478 |
| Hin1I | GRCGYC | 2 cut(s) | 42, 930 |
| Hin1II | CATG | 6 cut(s) | 91, 337, 488, 890, 1230, 1266 |
| Hin6I | GCGC | 2 cut(s) | 344, 476 |
| HinP1I | GCGC | 2 cut(s) | 344, 476 |
| HinfI | GANTC | 4 cut(s) | 150, 360, 1315, 1330 |
| HpaII | CCGG | 2 cut(s) | 364, 1343 |
| HphI | GGTGA | 1 cut(s) | 866 |
| Hpy166II | GTNNAC | 3 cut(s) | 173, 482, 681 |
| Hpy188I | TCNGA | 9 cut(s) | 21, 157, 247, 307, 502, 564, 976, 1311, 1320 |
| Hpy188III | TCNNGA | 4 cut(s) | 545, 695, 758, 866 |
| Hpy8I | GTNNAC | 3 cut(s) | 173, 482, 681 |
| Hpy99I | CGWCG | 2 cut(s) | 44, 47 |
| HpyAV | CCTTC | 4 cut(s) | 448, 838, 1018, 1022 |
| HpyCH4III | ACNGT | 2 cut(s) | 31, 417 |
| HpyCH4IV | ACGT | 2 cut(s) | 42, 1188 |
| HpyCH4V | TGCA | 4 cut(s) | 173, 437, 901, 1230 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 475, 596, 1088 |
| HpyF3I | CTNAG | 8 cut(s) | 18, 100, 154, 329, 606, 934, 975, 1151 |
| HpySE526I | ACGT | 2 cut(s) | 42, 1188 |
| Hsp92I | GRCGYC | 2 cut(s) | 42, 930 |
| Hsp92II | CATG | 6 cut(s) | 91, 337, 488, 890, 1230, 1266 |
| HspAI | GCGC | 2 cut(s) | 344, 476 |
| Ksp22I | TGATCA | 2 cut(s) | 252, 808 |
| Kzo9I | GATC | 9 cut(s) | 127, 196, 252, 302, 638, 808, 871, 1068, 1096 |
| LguI | GCTCTTC | 1 cut(s) | 122 |
| LmnI | GCTCC | 3 cut(s) | 85, 1087, 1345 |
| Lsp1109I | GCAGC | 3 cut(s) | 1094, 1157, 1324 |
| LweI | GCATC | 1 cut(s) | 856 |
| MaeI | CTAG | 2 cut(s) | 470, 558 |
| MaeII | ACGT | 2 cut(s) | 42, 1188 |
| MaeIII | GTNAC | 1 cut(s) | 625 |
| MalI | GATC | 9 cut(s) | 129, 198, 254, 304, 640, 810, 873, 1070, 1098 |
| MboI | GATC | 9 cut(s) | 127, 196, 252, 302, 638, 808, 871, 1068, 1096 |
| MfeI | CAATTG | 1 cut(s) | 393 |
| MhlI | GDGCHC | 2 cut(s) | 117, 175 |
| MluCI | AATT | 6 cut(s) | 311, 393, 404, 492, 632, 953 |
| MlyI | GAGTC | 2 cut(s) | 159, 1324 |
| MmeI | TCCRAC | 3 cut(s) | 60, 542, 903 |
| MnlI | CCTC | 7 cut(s) | 75, 453, 532, 668, 837, 884, 1123 |
| MroXI | GAANNNNTTC | 2 cut(s) | 540, 861 |
| MseI | TTAA | 5 cut(s) | 144, 369, 798, 1235, 1348 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1017, 1125 |
| MspA1I | CMGCKG | 1 cut(s) | 1337 |
| MspCI | CTTAAG | 1 cut(s) | 797 |
| MspI | CCGG | 2 cut(s) | 364, 1343 |
| MspR9I | CCNGG | 1 cut(s) | 1086 |
| MunI | CAATTG | 1 cut(s) | 393 |
| Mva1269I | GAATGC | 1 cut(s) | 903 |
| MvaI | CCWGG | 1 cut(s) | 1086 |
| MvnI | CGCG | 2 cut(s) | 344, 478 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 475, 596, 1088 |
| NdeI | CATATG | 1 cut(s) | 225 |
| NdeII | GATC | 9 cut(s) | 127, 196, 252, 302, 638, 808, 871, 1068, 1096 |
| NlaIII | CATG | 6 cut(s) | 91, 337, 488, 890, 1230, 1266 |
| NlaIV | GGNNCC | 3 cut(s) | 528, 543, 756 |
| NmuCI | GTSAC | 1 cut(s) | 625 |
| NspI | RCATGY | 1 cut(s) | 1230 |
| NspV | TTCGAA | 1 cut(s) | 236 |
| PaeI | GCATGC | 1 cut(s) | 1230 |
| PciSI | GCTCTTC | 1 cut(s) | 122 |
| PctI | GAATGC | 1 cut(s) | 903 |
| PdmI | GAANNNNTTC | 2 cut(s) | 540, 861 |
| PfeI | GAWTC | 2 cut(s) | 360, 1315 |
| PkrI | GCNGC | 3 cut(s) | 1109, 1147, 1339 |
| Ple19I | CGATCG | 1 cut(s) | 130 |
| PleI | GAGTC | 2 cut(s) | 158, 1324 |
| PpsI | GAGTC | 2 cut(s) | 158, 1324 |
| PpuMI | RGGWCCY | 1 cut(s) | 755 |
| Psp124BI | GAGCTC | 1 cut(s) | 117 |
| Psp5II | RGGWCCY | 1 cut(s) | 755 |
| Psp6I | CCWGG | 1 cut(s) | 1084 |
| PspFI | CCCAGC | 1 cut(s) | 1091 |
| PspGI | CCWGG | 1 cut(s) | 1084 |
| PspN4I | GGNNCC | 3 cut(s) | 528, 543, 756 |
| PspPI | GGNCC | 2 cut(s) | 655, 755 |
| PspPPI | RGGWCCY | 1 cut(s) | 755 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1030, 1062 |
| PvuI | CGATCG | 1 cut(s) | 130 |
| PvuII | CAGCTG | 1 cut(s) | 1337 |
| RsaI | GTAC | 3 cut(s) | 604, 782, 1258 |
| RsaNI | GTAC | 3 cut(s) | 603, 781, 1257 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1017, 1125 |
| SacI | GAGCTC | 1 cut(s) | 117 |
| SapI | GCTCTTC | 1 cut(s) | 122 |
| SaqAI | TTAA | 5 cut(s) | 144, 369, 798, 1235, 1348 |
| SatI | GCNGC | 3 cut(s) | 1108, 1146, 1338 |
| Sau3AI | GATC | 9 cut(s) | 127, 196, 252, 302, 638, 808, 871, 1068, 1096 |
| Sau96I | GGNCC | 2 cut(s) | 655, 755 |
| SchI | GAGTC | 2 cut(s) | 159, 1324 |
| ScrFI | CCNGG | 1 cut(s) | 1086 |
| SduI | GDGCHC | 2 cut(s) | 117, 175 |
| SfaNI | GCATC | 1 cut(s) | 856 |
| SfuI | TTCGAA | 1 cut(s) | 236 |
| SinI | GGWCC | 1 cut(s) | 755 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1017, 1125 |
| SmlI | CTYRAG | 2 cut(s) | 443, 797 |
| SmoI | CTYRAG | 2 cut(s) | 443, 797 |
| SphI | GCATGC | 1 cut(s) | 1230 |
| Sse9I | AATT | 6 cut(s) | 311, 393, 404, 492, 632, 953 |
| SsiI | CCGC | 4 cut(s) | 97, 342, 352, 1204 |
| SspMI | CTAG | 2 cut(s) | 470, 558 |
| SstI | GAGCTC | 1 cut(s) | 117 |
| StyD4I | CCNGG | 1 cut(s) | 1084 |
| TaaI | ACNGT | 2 cut(s) | 31, 417 |
| TaiI | ACGT | 2 cut(s) | 45, 1191 |
| TaqI | TCGA | 6 cut(s) | 126, 236, 637, 694, 865, 1117 |
| TasI | AATT | 6 cut(s) | 311, 393, 404, 492, 632, 953 |
| TfiI | GAWTC | 2 cut(s) | 360, 1315 |
| Tru1I | TTAA | 5 cut(s) | 144, 369, 798, 1235, 1348 |
| Tru9I | TTAA | 5 cut(s) | 144, 369, 798, 1235, 1348 |
| TscAI | CASTG | 1 cut(s) | 1132 |
| TseFI | GTSAC | 1 cut(s) | 625 |
| TseI | GCWGC | 3 cut(s) | 1107, 1145, 1337 |
| Tsp45I | GTSAC | 1 cut(s) | 625 |
| TspDTI | ATGAA | 1 cut(s) | 324 |
| TspRI | CASTG | 1 cut(s) | 1132 |
| Vha464I | CTTAAG | 1 cut(s) | 797 |
| VneI | GTGCAC | 1 cut(s) | 171 |
| VpaK11BI | GGWCC | 1 cut(s) | 755 |
| XapI | RAATTY | 3 cut(s) | 404, 492, 953 |
| XceI | RCATGY | 1 cut(s) | 1230 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 884 |
| XmnI | GAANNNNTTC | 2 cut(s) | 540, 861 |
| XspI | CTAG | 2 cut(s) | 470, 558 |
| ZraI | GACGTC | 1 cut(s) | 43 |