Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013193

Physical Location & Seq

Genomic Coordinates Reverse (-)

8976884 .. 8982840

Gene Structure 5957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1121900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCAAGCCGTTAGATCTCAGAGGAAATCCTTCGTCAAGGAAGTCGTCCCGACCCTCCCTCTCTACCGCTCTGCTCCCGCCCTTGAAGTTCGTCTAGAAGAGTTCGAGCTCTTCGCCCTCGATCGCCTCCGAGTGCTTAAAGGGATATCTGATGGATTATCACGCGGAAAGAAACATGACGAAATGCAGAAATTGGCAATAGAACTATGGAAGACAAATATGAGACATCCTCAGGCATCTGAGGTCGTCAACAAGGACATAATATCGCACTTTGTTCTTCGGCTAGTTTATTGCAGAACGGAGGACCTGAGAAAATGGTTTCTTTCCATGGAGACTGCCCTATTTCGTTACCGATTTATGAACGAACAACCTGAACCTCAGAGGGCGCTCATGGAAGAATTTGATCTTCCATACAAGGCAGTTGGTGGTTCTGAACTCGAGAGTGTATTAGATAAATTGGTCCAGGTTTCGCGTTCGCTCGGTGCTCAATCTCAACCAACTGCTAGTGATATCTTCTTCAAGGTACCGTTTGAAGAAGTCCCAGAACTGGTAGCCAGTCGTAGAGTATTCATCAGTAAGGGGCATGCATATATAGCTAGAAATCAGGTGGTTTCCCTTGTTGCCACACAGTTCCGCAGTCTTCTATCAAAGGCACTTATTTTGACAAACAGAAAATGGACAACAACTATAGCAGAACAAGAGAAGGATCGGTTGACTCCTATTGTTGAAGCCCTATCCTCAAGTTACCTGGGCCCCGACTATTCTGAGCCAAAAGAGTTTGGTCAGATTTCGTTAAAAGACATCGATGATGCAGCTAAGAGCTCATTTCCTCTGTGCATGCGCCACCTATTTGAAAAGTTGAGAGAGGATCATCATTTAAAGCATGGAGGGAGAATGCAACTAGGTCTCTTTCTCAAGGGTGTTGGGTTGAAGCTGGATGATGCCCTTGCGTTTTGGAAAGCTGAGTTCTCACAAAAAGTTGGTGTTGAAAGGTTTGACAAAGAATATTCATATGGCATACGCCACAATTATGGAAGAGAGGGGAAAAGAACGGATTACACGCCTTACTCCTGTCAAAAAATCATCTCATCTACTCCTGGTGTAGGAGATCATCATGGATGCCCATATCGATATTTCAGTGAAGAGAACTTGAGAGCAGCCCTTGGTAAAATGGGAGTTACTGGCCGAGCAGTTGGAGATGTAATGGACAAAGTTAAAAACAAACATTATCAGCTGGCATGCACCTTGACGTTCGAAGCTATTCATGGTTCATCATGCGACGCTGGAATTAACCATCCAAATCAGTACTTTAAGGACAGCCAAACTATTATAAAGTCTAAGAACCAGTCTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_lrg

Protein Analysis

453

Amino Acids

51.53

Weight (kDa)

9.1

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_lrg_N	PF26466	25 - 227	8e-54	Eukaryotic and archaeal DNA primase, large subunit N-terminal domain
DNA_primase_lrg	PF04104	271 - 437	1.3e-64	Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67320 AT1G67320
fragaria_vesca	FvH4_4g14550 FvH4_4g14550 FvH4_4g14550
malus_domestica	MD09G1083700.v1.1 MD13G1121900.v1.1 MD16G1122200.v1.1
prunus_persica	Prupe.1G223400_v2.0.a1
pyrus_communis	pycom13g10610
rosa_chinensis	RchiOBHm_Chr4g0418271
rosa_laevigata	RLG00000007881
rosa_multiflora	Rmu_sc0000032.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361450
rosa_rugosa	Rorug04G0151600
rosa_samantha	Rh4AG213200 Rh4CG224900
rosa_wichuraiana	Rw4G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1331
Acc65I	GGTACC	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	69
AccII	CGCG	2 cut(s)	165, 472
AciI	CCGC	4 cut(s)	67, 78, 165, 634
AclWI	GGATC	2 cut(s)	714, 876
AcoI	YGGCCR	1 cut(s)	1183
AcsI	RAATTY	1 cut(s)	398
AfaI	GTAC	2 cut(s)	525, 1307
AfiI	CCNNNNNNNGG	2 cut(s)	547, 1103
AgsI	TTSAA	7 cut(s)	86, 520, 533, 728, 854, 931, 989
AjnI	CCWGG	3 cut(s)	462, 747, 1096
AluBI	AGCT	9 cut(s)	109, 596, 815, 822, 934, 962, 1234, 1259, 1355
AluI	AGCT	9 cut(s)	109, 596, 815, 822, 934, 962, 1234, 1259, 1355
Alw21I	GWGCWC	3 cut(s)	111, 487, 824
Alw26I	GTCTC	3 cut(s)	217, 326, 911
AlwI	GGATC	2 cut(s)	714, 876
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	751, 1183
ApaI	GGGCCC	1 cut(s)	755
ApeKI	GCWGC	3 cut(s)	812, 1157, 1352
ApoI	RAATTY	1 cut(s)	398
Asp700I	GAANNNNTTC	2 cut(s)	29, 1260
Asp718I	GGTACC	1 cut(s)	523
AspLEI	GCGC	2 cut(s)	388, 843
AspS9I	GGNCC	4 cut(s)	304, 460, 751, 752
AsuII	TTCGAA	1 cut(s)	1254
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	304, 460
AxyI	CCTNAGG	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	755
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	3 cut(s)	111, 755, 824
BbsI	GAAGAC	2 cut(s)	218, 632
Bbv12I	GWGCWC	3 cut(s)	111, 487, 824
BbvI	GCAGC	2 cut(s)	824, 1169
BccI	CCATC	2 cut(s)	146, 1302
BciT130I	CCWGG	3 cut(s)	464, 749, 1098
BcoDI	GTCTC	3 cut(s)	217, 326, 911
BfaI	CTAG	5 cut(s)	95, 284, 504, 597, 902
BfmI	CTRYAG	2 cut(s)	687, 1350
BfoI	RGCGCY	1 cut(s)	389
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	3 cut(s)	813, 1158, 1353
BlsI	GCNGC	3 cut(s)	814, 1159, 1354
BmcAI	AGTACT	1 cut(s)	1307
Bme1390I	CCNGG	3 cut(s)	464, 749, 1098
Bme18I	GGWCC	2 cut(s)	304, 460
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	4 cut(s)	304, 460, 751, 752
BmiI	GGNNCC	3 cut(s)	525, 753, 754
BmrFI	CCNGG	3 cut(s)	464, 749, 1098
BmsI	GCATC	4 cut(s)	245, 799, 931, 1109
BpiI	GAAGAC	2 cut(s)	218, 632
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
Bpu14I	TTCGAA	1 cut(s)	1254
BpuEI	CTTGAG	3 cut(s)	724, 899, 1171
Bsa29I	ATCGAT	2 cut(s)	804, 1129
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	3 cut(s)	327, 748, 1162
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 1103
Bse1I	ACTGG	4 cut(s)	552, 555, 1186, 1345
Bse21I	CCTNAGG	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	464, 749, 1098
BseCI	ATCGAT	2 cut(s)	804, 1129
BseDI	CCNNGG	3 cut(s)	327, 748, 1162
BseGI	GGATG	4 cut(s)	226, 943, 1124, 1294
BseLI	CCNNNNNNNGG	2 cut(s)	547, 1103
BseMII	CTCAG	7 cut(s)	32, 231, 245, 299, 392, 756, 954
BseNI	ACTGG	4 cut(s)	552, 555, 1186, 1345
BseSI	GKGCMC	1 cut(s)	755
BseXI	GCAGC	2 cut(s)	824, 1169
Bsh1236I	CGCG	2 cut(s)	165, 472
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	753, 1185
BshNI	GGYRCC	1 cut(s)	523
BshVI	ATCGAT	2 cut(s)	804, 1129
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	111, 487, 824
BsiHKCI	CYCGRG	1 cut(s)	437
BslFI	GGGAC	2 cut(s)	32, 524
BslI	CCNNNNNNNGG	2 cut(s)	547, 1103
BsmAI	GTCTC	3 cut(s)	217, 326, 911
BsmFI	GGGAC	2 cut(s)	32, 524
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	2 cut(s)	753, 1185
Bso31I	GGTCTC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	437
Bsp119I	TTCGAA	1 cut(s)	1254
Bsp120I	GGGCCC	1 cut(s)	751
Bsp1286I	GDGCHC	4 cut(s)	111, 487, 755, 824
Bsp143I	GATC	6 cut(s)	14, 121, 403, 706, 868, 1108
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	4 cut(s)	67, 78, 165, 634
BspANI	GGCC	2 cut(s)	753, 1185
BspCNI	CTCAG	7 cut(s)	31, 232, 244, 300, 391, 757, 955
BspDI	ATCGAT	2 cut(s)	804, 1129
BspFNI	CGCG	2 cut(s)	165, 472
BspLI	GGNNCC	3 cut(s)	525, 753, 754
BspMAI	CTGCAG	1 cut(s)	1354
BspPI	GGATC	2 cut(s)	714, 876
BspQI	GCTCTTC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	1254
BspT107I	GGYRCC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	911
BsrBI	CCGCTC	1 cut(s)	69
BsrI	ACTGG	4 cut(s)	552, 555, 1186, 1345
BssECI	CCNNGG	3 cut(s)	327, 748, 1162
BssMI	GATC	6 cut(s)	14, 121, 403, 706, 868, 1108
BssT1I	CCWWGG	2 cut(s)	327, 1162
Bst2UI	CCWGG	3 cut(s)	464, 749, 1098
Bst4CI	ACNGT	2 cut(s)	528, 630
Bst6I	CTCTTC	4 cut(s)	93, 116, 1030, 1137
BstBI	TTCGAA	1 cut(s)	1254
BstC8I	GCNNGC	5 cut(s)	6, 585, 839, 1236, 1240
BstDEI	CTNAG	9 cut(s)	18, 231, 240, 308, 378, 765, 816, 963, 1338
BstDSI	CCRYGG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	1101
BstF5I	GGATG	4 cut(s)	226, 943, 1124, 1294
BstFNI	CGCG	2 cut(s)	165, 472
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	2 cut(s)	388, 843
BstKTI	GATC	6 cut(s)	17, 124, 406, 709, 871, 1111
BstMAI	GTCTC	3 cut(s)	217, 326, 911
BstMBI	GATC	6 cut(s)	14, 121, 403, 706, 868, 1108
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	3 cut(s)	464, 749, 1098
BstNSI	RCATGY	3 cut(s)	587, 841, 1242
BstSCI	CCNGG	3 cut(s)	462, 747, 1096
BstSFI	CTRYAG	2 cut(s)	687, 1350
BstSLI	GKGCMC	1 cut(s)	755
BstUI	CGCG	2 cut(s)	165, 472
BstV1I	GCAGC	2 cut(s)	824, 1169
BstV2I	GAAGAC	2 cut(s)	218, 632
BstX2I	RGATCY	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	1031
BstYI	RGATCY	1 cut(s)	14
Bsu15I	ATCGAT	2 cut(s)	804, 1129
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	753, 1185
BsuTUI	ATCGAT	2 cut(s)	804, 1129
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	4 cut(s)	226, 943, 1124, 1294
BtsIMutI	CAGTG	1 cut(s)	1144
Cac8I	GCNNGC	5 cut(s)	6, 585, 839, 1236, 1240
CfoI	GCGC	2 cut(s)	388, 843
Cfr13I	GGNCC	4 cut(s)	304, 460, 751, 752
ClaI	ATCGAT	2 cut(s)	804, 1129
CseI	GACGC	1 cut(s)	1289
Csp6I	GTAC	2 cut(s)	524, 1306
CviQI	GTAC	2 cut(s)	524, 1306
DdeI	CTNAG	9 cut(s)	18, 231, 240, 308, 378, 765, 816, 963, 1338
DpnI	GATC	6 cut(s)	16, 123, 405, 708, 870, 1110
DpnII	GATC	6 cut(s)	14, 121, 403, 706, 868, 1108
DraI	TTTAAA	1 cut(s)	879
EaeI	YGGCCR	1 cut(s)	1183
Eam1104I	CTCTTC	4 cut(s)	93, 116, 1030, 1137
EarI	CTCTTC	4 cut(s)	93, 116, 1030, 1137
Ecl136II	GAGCTC	2 cut(s)	109, 822
Eco130I	CCWWGG	2 cut(s)	327, 1162
Eco24I	GRGCYC	3 cut(s)	111, 755, 824
Eco31I	GGTCTC	1 cut(s)	911
Eco32I	GATATC	2 cut(s)	147, 511
Eco47I	GGWCC	2 cut(s)	304, 460
Eco53kI	GAGCTC	2 cut(s)	109, 822
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	2 cut(s)	109, 822
EcoNI	CCTNNNNNAGG	1 cut(s)	1101
EcoO109I	RGGNCCY	2 cut(s)	304, 752
EcoRII	CCWGG	3 cut(s)	462, 747, 1096
EcoRV	GATATC	2 cut(s)	147, 511
EcoT14I	CCWWGG	2 cut(s)	327, 1162
EcoT22I	ATGCAT	1 cut(s)	589
EcoT38I	GRGCYC	3 cut(s)	111, 755, 824
ErhI	CCWWGG	2 cut(s)	327, 1162
FaqI	GGGAC	2 cut(s)	32, 524
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	1012
Fnu4HI	GCNGC	3 cut(s)	813, 1158, 1353
FokI	GGATG	4 cut(s)	213, 950, 1131, 1281
FriOI	GRGCYC	3 cut(s)	111, 755, 824
Fsp4HI	GCNGC	3 cut(s)	813, 1158, 1353
FspBI	CTAG	5 cut(s)	95, 284, 504, 597, 902
GlaI	GCGC	2 cut(s)	387, 842
GluI	GCNGC	3 cut(s)	813, 1158, 1353
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	753, 1185
HgaI	GACGC	1 cut(s)	1289
HhaI	GCGC	2 cut(s)	388, 843
Hin6I	GCGC	2 cut(s)	386, 841
HinP1I	GCGC	2 cut(s)	386, 841
HincII	GTYRAC	2 cut(s)	250, 714
HindII	GTYRAC	2 cut(s)	250, 714
HinfI	GANTC	1 cut(s)	715
Hpy166II	GTNNAC	2 cut(s)	250, 714
Hpy188I	TCNGA	8 cut(s)	21, 131, 151, 241, 381, 433, 766, 786
Hpy188III	TCNNGA	3 cut(s)	49, 95, 439
Hpy8I	GTNNAC	2 cut(s)	250, 714
Hpy99I	CGWCG	1 cut(s)	1283
HpyAV	CCTTC	2 cut(s)	40, 697
HpyCH4III	ACNGT	2 cut(s)	528, 630
HpyCH4IV	ACGT	1 cut(s)	1250
HpyCH4V	TGCA	9 cut(s)	4, 187, 294, 587, 812, 837, 898, 1242, 1352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	9 cut(s)	18, 231, 240, 308, 378, 765, 816, 963, 1338
HpySE526I	ACGT	1 cut(s)	1250
HspAI	GCGC	2 cut(s)	386, 841
KpnI	GGTACC	1 cut(s)	527
Kzo9I	GATC	6 cut(s)	14, 121, 403, 706, 868, 1108
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	824, 1169
LweI	GCATC	4 cut(s)	245, 799, 931, 1109
MaeI	CTAG	5 cut(s)	95, 284, 504, 597, 902
MaeII	ACGT	1 cut(s)	1250
MaeIII	GTNAC	3 cut(s)	347, 743, 1177
MalI	GATC	6 cut(s)	16, 123, 405, 708, 870, 1110
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	6 cut(s)	14, 121, 403, 706, 868, 1108
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	4 cut(s)	111, 487, 755, 824
MluCI	AATT	5 cut(s)	191, 398, 455, 1027, 1287
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	1174
Mph1103I	ATGCAT	1 cut(s)	589
MroXI	GAANNNNTTC	2 cut(s)	29, 1260
MseI	TTAA	7 cut(s)	138, 794, 878, 1215, 1290, 1311, 1357
MslI	CAYNNNNRTG	1 cut(s)	1029
MspA1I	CMGCKG	1 cut(s)	1234
MspR9I	CCNGG	3 cut(s)	464, 749, 1098
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	3 cut(s)	464, 749, 1098
MvnI	CGCG	2 cut(s)	165, 472
MwoI	GCNNNNNNNGC	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	327
NdeI	CATATG	1 cut(s)	1012
NdeII	GATC	6 cut(s)	14, 121, 403, 706, 868, 1108
NlaIV	GGNNCC	3 cut(s)	525, 753, 754
NmeAIII	GCCGAG	1 cut(s)	1211
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	3 cut(s)	587, 841, 1242
NspV	TTCGAA	1 cut(s)	1254
PaeI	GCATGC	3 cut(s)	587, 841, 1242
PaeR7I	CTCGAG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	900
PdmI	GAANNNNTTC	2 cut(s)	29, 1260
PkrI	GCNGC	3 cut(s)	814, 1159, 1354
Ple19I	CGATCG	1 cut(s)	124
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PpuMI	RGGWCCY	1 cut(s)	304
PsiI	TTATAA	1 cut(s)	1331
Psp124BI	GAGCTC	2 cut(s)	111, 824
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	3 cut(s)	462, 747, 1096
PspGI	CCWGG	3 cut(s)	462, 747, 1096
PspN4I	GGNNCC	3 cut(s)	525, 753, 754
PspOMI	GGGCCC	1 cut(s)	751
PspPI	GGNCC	4 cut(s)	304, 460, 751, 752
PspPPI	RGGWCCY	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	1354
PsuI	RGATCY	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	1234
RsaI	GTAC	2 cut(s)	525, 1307
RsaNI	GTAC	2 cut(s)	524, 1306
RseI	CAYNNNNRTG	1 cut(s)	1029
SacI	GAGCTC	2 cut(s)	111, 824
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	7 cut(s)	138, 794, 878, 1215, 1290, 1311, 1357
SatI	GCNGC	3 cut(s)	813, 1158, 1353
Sau3AI	GATC	6 cut(s)	14, 121, 403, 706, 868, 1108
Sau96I	GGNCC	4 cut(s)	304, 460, 751, 752
ScaI	AGTACT	1 cut(s)	1307
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	3 cut(s)	464, 749, 1098
SduI	GDGCHC	4 cut(s)	111, 487, 755, 824
SfaNI	GCATC	4 cut(s)	245, 799, 931, 1109
SfcI	CTRYAG	2 cut(s)	687, 1350
Sfr274I	CTCGAG	1 cut(s)	437
SfuI	TTCGAA	1 cut(s)	1254
SinI	GGWCC	2 cut(s)	304, 460
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	1029
SmlI	CTYRAG	4 cut(s)	437, 739, 914, 1150
SmoI	CTYRAG	4 cut(s)	437, 739, 914, 1150
SphI	GCATGC	3 cut(s)	587, 841, 1242
Sse9I	AATT	5 cut(s)	191, 398, 455, 1027, 1287
SsiI	CCGC	4 cut(s)	67, 78, 165, 634
SspI	AATATT	1 cut(s)	1007
SspMI	CTAG	5 cut(s)	95, 284, 504, 597, 902
SstI	GAGCTC	2 cut(s)	111, 824
StyD4I	CCNGG	3 cut(s)	462, 747, 1096
StyI	CCWWGG	2 cut(s)	327, 1162
TaaI	ACNGT	2 cut(s)	528, 630
TaiI	ACGT	1 cut(s)	1253
TaqI	TCGA	6 cut(s)	105, 120, 438, 804, 1129, 1254
TasI	AATT	5 cut(s)	191, 398, 455, 1027, 1287
TatI	WGTACW	1 cut(s)	1305
Tru1I	TTAA	7 cut(s)	138, 794, 878, 1215, 1290, 1311, 1357
Tru9I	TTAA	7 cut(s)	138, 794, 878, 1215, 1290, 1311, 1357
TscAI	CASTG	1 cut(s)	1144
TseI	GCWGC	3 cut(s)	812, 1157, 1352
TspDTI	ATGAA	5 cut(s)	374, 559, 999, 1253, 1260
TspGWI	ACGGA	2 cut(s)	314, 1067
TspRI	CASTG	1 cut(s)	1144
VpaK11BI	GGWCC	2 cut(s)	304, 460
XagI	CCTNNNNNAGG	1 cut(s)	1101
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	94
XceI	RCATGY	3 cut(s)	587, 841, 1242
XhoI	CTCGAG	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	29, 1260
XspI	CTAG	5 cut(s)	95, 284, 504, 597, 902
ZrmI	AGTACT	1 cut(s)	1307
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.