Prupe.1G223400_v2.0.a1

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
23730079 .. 23736680
6602 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G223400.2

Sequence Viewer

Length: 1356 bp
ATGGAACCCGTTCGGTCTCAGAGAAAATTGATCGTCAATGACGTCGTCTCGACCCTCCCTCTCTACCGCTCTGCTCCCGCCCTTGAAGTTCGTCTCGAAGAGTTCGAGCTTTTCGCCCTCGATCGCCTCCGAGTGCTAAAAGGGATTTCTGATGCATTATCACGAGGAAGGAAACCTGAAGAAATGGAGAAATTGGCAATTGATCTATGGAAGACAAATATGAGGCATCCTCAGGCATCCGAGGTCATCAACAAGGACAAAATATCACACTTTGTTCTGCGTCTAGTTTATTGCAGAACGGAGGACCTGAGGAAATGGTTTCTTTCCATGGAGACTGCCCTATTTCGTTACCGGTTTAAACGGGAAAAGCAAGAAGCTCAGAGGGCACTCATGGCAGAATTTGATCTTCCATACAAGGCAGTTAGTAGTCCAGAATTCGAGAGTGTAAAAGAGAAATTGGTCCTGGTTTCACGTTCCCTCGGTCAATCTTCACCAACTGCTGATGACATCTTCTTCAAGGTACCATTTGAAGAAGTTCCAGAACTTGTAGCTGGTCGTAGAGTGTTCATCAGTAAGGGGCATGCATATATAGCTATGAGTCAGGTGGTTTCCCTTGTTGCCACGCAATTCCGCAGTCATCTGTCAAAGGCACTTATTTTGACAAACAGAAAATGGACTACAACTATAGCAGAACAAGAGAAGGATCGGTTGACTCCAATTGTTGAAGCCCTATCCTCAAGCTACCTGGGACCTGACTATTCTCAGCCAAAAGAATTTGCTCAGATTTCCTTAAAAGACATTGATGATGTAGCTAAGAGCTCCTTTCCTCTGTGCATGCGTCACCTATTTGAAAAGTTGAGAGAGGATCATCATTTAAAGCATGGAGGTAGAATGCAACTAGGTCTCTTCCTCAAGGGTGTTGGCTTGAAGCTGGATGATGCCCTTGCGTTTTGGAAAGCTGAGTTTTCGCGAAAGGTTGGTGCCGAAAGGTTTGACAAAGAATATTCATATGGCATACGCCACAATTACGGAAGAGAAGGCAAAAGAACAGATTACACACCTTATTCCTGTCAAAAAATCATCTCTTCTACTCCTGGTGTAGGAGATCATCATGGATGCCCGTATCGAAATTTCAGTGAAGAGAATTTGAGAGCAGCTCTCAATAAAATGGGAGTTACCGGCCGTGCAGTTGGAGATGTCATGGACAAAGTGCGAAACAGACATTATCAGCTGGCATGCACCTTGACGTTTGAAGCTGTTCATGGGTCATCATGCGATGCTGGGATTAACCATCCAAATCAATACTTTTCCGACAGCCAAAAGATTATGCAGTCCAAGAACCAGTCTGCAGCTTAA

Protein Analysis

452

Amino Acids

51.6

Weight (kDa)

9.23

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013193)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
Acc65I GGTACC 1 cut(s) 520
AccB1I GGYRCC 2 cut(s) 520, 980
AccBSI CCGCTC 1 cut(s) 69
AccII CGCG 1 cut(s) 970
AciI CCGC 3 cut(s) 67, 78, 631
AclWI GGATC 2 cut(s) 711, 873
AcoI YGGCCR 1 cut(s) 1180
AcsI RAATTY 5 cut(s) 398, 434, 773, 1129, 1144
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 1 cut(s) 1100
AgeI ACCGGT 1 cut(s) 351
AgsI TTSAA 7 cut(s) 86, 517, 530, 725, 851, 928, 1253
AjnI CCWGG 3 cut(s) 462, 744, 1093
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 5 cut(s) 21, 52, 98, 326, 908
AlwI GGATC 2 cut(s) 711, 873
AoxI GGCC 1 cut(s) 1180
ApeKI GCWGC 2 cut(s) 1154, 1349
ApoI RAATTY 5 cut(s) 398, 434, 773, 1129, 1144
AsiGI ACCGGT 1 cut(s) 351
Asp700I GAANNNNTTC 3 cut(s) 9, 534, 1257
Asp718I GGTACC 1 cut(s) 520
AspS9I GGNCC 3 cut(s) 304, 460, 749
AsuHPI GGTGA 2 cut(s) 483, 833
AvaII GGWCC 3 cut(s) 304, 460, 749
AxyI CCTNAGG 2 cut(s) 231, 308
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 2 cut(s) 520, 980
BanII GRGCYC 1 cut(s) 821
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 821
BbvI GCAGC 1 cut(s) 1166
BccI CCATC 1 cut(s) 1299
BceAI ACGGC 1 cut(s) 1167
BciT130I CCWGG 3 cut(s) 464, 746, 1095
BcoDI GTCTC 5 cut(s) 21, 52, 98, 326, 908
BfaI CTAG 2 cut(s) 284, 899
BfmI CTRYAG 2 cut(s) 684, 1347
BisI GCNGC 2 cut(s) 1155, 1350
BlsI GCNGC 2 cut(s) 1156, 1351
Bme1390I CCNGG 3 cut(s) 464, 746, 1095
Bme18I GGWCC 3 cut(s) 304, 460, 749
BmgT120I GGNCC 3 cut(s) 304, 460, 749
BmiI GGNNCC 4 cut(s) 6, 522, 750, 982
BmrFI CCNGG 3 cut(s) 464, 746, 1095
BmsI GCATC 6 cut(s) 142, 235, 245, 928, 1106, 1267
BpiI GAAGAC 1 cut(s) 218
BplI GAGNNNNNCTC 6 cut(s) 214, 246, 1141, 1173, 1143, 1175
BpuEI CTTGAG 2 cut(s) 721, 896
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 2 cut(s) 21, 908
BsaJI CCNNGG 4 cut(s) 240, 327, 478, 745
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 1100
Bse118I RCCGGY 2 cut(s) 351, 1178
Bse1I ACTGG 1 cut(s) 1342
Bse21I CCTNAGG 2 cut(s) 231, 308
BseBI CCWGG 3 cut(s) 464, 746, 1095
BseDI CCNNGG 4 cut(s) 240, 327, 478, 745
BseGI GGATG 5 cut(s) 226, 236, 940, 1121, 1291
BseLI CCNNNNNNNGG 1 cut(s) 1100
BseMII CTCAG 7 cut(s) 32, 245, 299, 392, 776, 794, 951
BseNI ACTGG 1 cut(s) 1342
BseSI GKGCMC 1 cut(s) 388
BseX3I CGGCCG 1 cut(s) 1180
BseXI GCAGC 1 cut(s) 1166
BseYI CCCAGC 1 cut(s) 1280
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 970
Bsh1285I CGRYCG 2 cut(s) 124, 1183
BshFI GGCC 1 cut(s) 1182
BshNI GGYRCC 2 cut(s) 520, 980
BshTI ACCGGT 1 cut(s) 351
BsiEI CGRYCG 2 cut(s) 124, 1183
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 2 cut(s) 352, 1179
BslFI GGGAC 1 cut(s) 762
BslI CCNNNNNNNGG 1 cut(s) 1100
BsmAI GTCTC 5 cut(s) 21, 52, 98, 326, 908
BsmBI CGTCTC 2 cut(s) 52, 98
BsmFI GGGAC 1 cut(s) 762
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 1 cut(s) 1182
Bso31I GGTCTC 2 cut(s) 21, 908
Bsp1286I GDGCHC 2 cut(s) 388, 821
Bsp143I GATC 7 cut(s) 30, 121, 202, 403, 703, 865, 1105
Bsp19I CCATGG 1 cut(s) 327
Bsp68I TCGCGA 1 cut(s) 970
BspACI CCGC 3 cut(s) 67, 78, 631
BspANI GGCC 1 cut(s) 1182
BspCNI CTCAG 7 cut(s) 31, 244, 300, 391, 775, 793, 952
BspFNI CGCG 1 cut(s) 970
BspLI GGNNCC 4 cut(s) 6, 522, 750, 982
BspMAI CTGCAG 1 cut(s) 1351
BspPI GGATC 2 cut(s) 711, 873
BspT107I GGYRCC 2 cut(s) 520, 980
BspTNI GGTCTC 2 cut(s) 21, 908
BsrBI CCGCTC 1 cut(s) 69
BsrFI RCCGGY 2 cut(s) 351, 1178
BsrI ACTGG 1 cut(s) 1342
BssAI RCCGGY 2 cut(s) 351, 1178
BssECI CCNNGG 4 cut(s) 240, 327, 478, 745
BssMI GATC 7 cut(s) 30, 121, 202, 403, 703, 865, 1105
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 464, 746, 1095
Bst6I CTCTTC 5 cut(s) 93, 911, 1027, 1090, 1134
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 582, 836, 1233, 1237
BstDEI CTNAG 8 cut(s) 18, 231, 308, 378, 762, 780, 813, 960
BstDSI CCRYGG 1 cut(s) 327
BstENI CCTNNNNNAGG 1 cut(s) 1098
BstF5I GGATG 5 cut(s) 226, 236, 940, 1121, 1291
BstFNI CGCG 1 cut(s) 970
BstKTI GATC 7 cut(s) 33, 124, 205, 406, 706, 868, 1108
BstMAI GTCTC 5 cut(s) 21, 52, 98, 326, 908
BstMBI GATC 7 cut(s) 30, 121, 202, 403, 703, 865, 1105
BstMCI CGRYCG 2 cut(s) 124, 1183
BstMWI GCNNNNNNNGC 3 cut(s) 383, 392, 590
BstNI CCWGG 3 cut(s) 464, 746, 1095
BstNSI RCATGY 3 cut(s) 584, 838, 1239
BstSCI CCNGG 3 cut(s) 462, 744, 1093
BstSFI CTRYAG 2 cut(s) 684, 1347
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 1 cut(s) 970
BstV1I GCAGC 1 cut(s) 1166
BstV2I GAAGAC 1 cut(s) 218
BstZI CGGCCG 1 cut(s) 1180
Bsu36I CCTNAGG 2 cut(s) 231, 308
BsuRI GGCC 1 cut(s) 1182
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 1290
BtsCI GGATG 5 cut(s) 226, 236, 940, 1121, 1291
BtsIMutI CAGTG 1 cut(s) 1141
BtuMI TCGCGA 1 cut(s) 970
Cac8I GCNNGC 4 cut(s) 582, 836, 1233, 1237
Cfr10I RCCGGY 2 cut(s) 351, 1178
Cfr13I GGNCC 3 cut(s) 304, 460, 749
CseI GACGC 2 cut(s) 269, 827
Csp6I GTAC 1 cut(s) 521
CspAI ACCGGT 1 cut(s) 351
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 8 cut(s) 18, 231, 308, 378, 762, 780, 813, 960
DpnI GATC 7 cut(s) 32, 123, 204, 405, 705, 867, 1107
DpnII GATC 7 cut(s) 30, 121, 202, 403, 703, 865, 1105
DraI TTTAAA 2 cut(s) 358, 876
EaeI YGGCCR 1 cut(s) 1180
EagI CGGCCG 1 cut(s) 1180
Eam1104I CTCTTC 5 cut(s) 93, 911, 1027, 1090, 1134
EarI CTCTTC 5 cut(s) 93, 911, 1027, 1090, 1134
Ecl136II GAGCTC 1 cut(s) 819
EclXI CGGCCG 1 cut(s) 1180
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 821
Eco31I GGTCTC 2 cut(s) 21, 908
Eco47I GGWCC 3 cut(s) 304, 460, 749
Eco52I CGGCCG 1 cut(s) 1180
Eco53kI GAGCTC 1 cut(s) 819
Eco57I CTGAAG 1 cut(s) 198
Eco81I CCTNAGG 2 cut(s) 231, 308
EcoICRI GAGCTC 1 cut(s) 819
EcoNI CCTNNNNNAGG 1 cut(s) 1098
EcoO109I RGGNCCY 2 cut(s) 304, 749
EcoRI GAATTC 1 cut(s) 434
EcoRII CCWGG 3 cut(s) 462, 744, 1093
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 2 cut(s) 157, 586
EcoT38I GRGCYC 1 cut(s) 821
ErhI CCWWGG 1 cut(s) 327
Esp3I CGTCTC 2 cut(s) 52, 98
FalI AAGNNNNNCTT 2 cut(s) 806, 838
FaqI GGGAC 1 cut(s) 762
FauI CCCGC 1 cut(s) 85
FauNDI CATATG 1 cut(s) 1009
Fnu4HI GCNGC 2 cut(s) 1155, 1350
FokI GGATG 5 cut(s) 213, 223, 947, 1128, 1278
FriOI GRGCYC 1 cut(s) 821
Fsp4HI GCNGC 2 cut(s) 1155, 1350
FspBI CTAG 2 cut(s) 284, 899
GluI GCNGC 2 cut(s) 1155, 1350
GsaI CCCAGC 1 cut(s) 1284
HaeIII GGCC 1 cut(s) 1182
HapII CCGG 2 cut(s) 352, 1179
HgaI GACGC 2 cut(s) 269, 827
Hin1I GRCGYC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HinfI GANTC 2 cut(s) 598, 712
HpaII CCGG 2 cut(s) 352, 1179
HphI GGTGA 2 cut(s) 483, 833
Hpy166II GTNNAC 1 cut(s) 711
Hpy188I TCNGA 7 cut(s) 21, 131, 151, 241, 381, 783, 1312
Hpy188III TCNNGA 7 cut(s) 49, 95, 162, 431, 439, 539, 969
Hpy8I GTNNAC 1 cut(s) 711
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 162, 694, 1031
HpyCH4IV ACGT 3 cut(s) 42, 472, 1247
HpyCH4V TGCA 9 cut(s) 155, 294, 584, 834, 895, 1187, 1239, 1330, 1349
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 392, 590
HpyF3I CTNAG 8 cut(s) 18, 231, 308, 378, 762, 780, 813, 960
HpySE526I ACGT 3 cut(s) 42, 472, 1247
Hsp92I GRCGYC 1 cut(s) 42
KpnI GGTACC 1 cut(s) 524
Kzo9I GATC 7 cut(s) 30, 121, 202, 403, 703, 865, 1105
LmnI GCTCC 2 cut(s) 79, 824
Lsp1109I GCAGC 1 cut(s) 1166
LweI GCATC 6 cut(s) 142, 235, 245, 928, 1106, 1267
MaeI CTAG 2 cut(s) 284, 899
MaeII ACGT 3 cut(s) 42, 472, 1247
MaeIII GTNAC 3 cut(s) 347, 839, 1174
MalI GATC 7 cut(s) 32, 123, 204, 405, 705, 867, 1107
MbiI CCGCTC 1 cut(s) 69
MboI GATC 7 cut(s) 30, 121, 202, 403, 703, 865, 1105
MfeI CAATTG 2 cut(s) 198, 717
MhlI GDGCHC 2 cut(s) 388, 821
MlyI GAGTC 2 cut(s) 607, 706
MmeI TCCRAC 2 cut(s) 1171, 1335
Mph1103I ATGCAT 2 cut(s) 157, 586
MroXI GAANNNNTTC 3 cut(s) 9, 534, 1257
MseI TTAA 5 cut(s) 357, 791, 875, 1287, 1354
MspA1I CMGCKG 1 cut(s) 1231
MspI CCGG 2 cut(s) 352, 1179
MspR9I CCNGG 3 cut(s) 464, 746, 1095
MssI GTTTAAAC 1 cut(s) 358
MunI CAATTG 2 cut(s) 198, 717
Mva1269I GAATGC 1 cut(s) 897
MvaI CCWGG 3 cut(s) 464, 746, 1095
MvnI CGCG 1 cut(s) 970
MwoI GCNNNNNNNGC 3 cut(s) 383, 392, 590
NcoI CCATGG 1 cut(s) 327
NdeI CATATG 1 cut(s) 1009
NdeII GATC 7 cut(s) 30, 121, 202, 403, 703, 865, 1105
NlaIV GGNNCC 4 cut(s) 6, 522, 750, 982
NmuCI GTSAC 1 cut(s) 839
NruI TCGCGA 1 cut(s) 970
NsiI ATGCAT 2 cut(s) 157, 586
NspI RCATGY 3 cut(s) 584, 838, 1239
PaeI GCATGC 3 cut(s) 584, 838, 1239
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 102
PctI GAATGC 1 cut(s) 897
PdmI GAANNNNTTC 3 cut(s) 9, 534, 1257
PflFI GACNNNGTC 1 cut(s) 44
PinAI ACCGGT 1 cut(s) 351
PkrI GCNGC 2 cut(s) 1156, 1351
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 2 cut(s) 606, 706
PmeI GTTTAAAC 1 cut(s) 358
PpsI GAGTC 2 cut(s) 606, 706
PpuMI RGGWCCY 2 cut(s) 304, 749
Psp124BI GAGCTC 1 cut(s) 821
Psp5II RGGWCCY 2 cut(s) 304, 749
Psp6I CCWGG 3 cut(s) 462, 744, 1093
PspFI CCCAGC 1 cut(s) 1280
PspGI CCWGG 3 cut(s) 462, 744, 1093
PspN4I GGNNCC 4 cut(s) 6, 522, 750, 982
PspPI GGNCC 3 cut(s) 304, 460, 749
PspPPI RGGWCCY 2 cut(s) 304, 749
PstI CTGCAG 1 cut(s) 1351
PsyI GACNNNGTC 1 cut(s) 44
PvuI CGATCG 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 1231
RruI TCGCGA 1 cut(s) 970
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
SacI GAGCTC 1 cut(s) 821
SaqAI TTAA 5 cut(s) 357, 791, 875, 1287, 1354
SatI GCNGC 2 cut(s) 1155, 1350
Sau3AI GATC 7 cut(s) 30, 121, 202, 403, 703, 865, 1105
Sau96I GGNCC 3 cut(s) 304, 460, 749
SchI GAGTC 2 cut(s) 607, 706
ScrFI CCNGG 3 cut(s) 464, 746, 1095
SduI GDGCHC 2 cut(s) 388, 821
SfaNI GCATC 6 cut(s) 142, 235, 245, 928, 1106, 1267
SfcI CTRYAG 2 cut(s) 684, 1347
SinI GGWCC 3 cut(s) 304, 460, 749
SmlI CTYRAG 2 cut(s) 736, 911
SmoI CTYRAG 2 cut(s) 736, 911
SphI GCATGC 3 cut(s) 584, 838, 1239
SsiI CCGC 3 cut(s) 67, 78, 631
SspI AATATT 1 cut(s) 1004
SspMI CTAG 2 cut(s) 284, 899
SstI GAGCTC 1 cut(s) 821
StyD4I CCNGG 3 cut(s) 462, 744, 1093
StyI CCWWGG 1 cut(s) 327
TaiI ACGT 3 cut(s) 45, 475, 1250
TaqI TCGA 6 cut(s) 50, 96, 105, 120, 438, 1126
TaqII GACCGA 1 cut(s) 470
Tru1I TTAA 5 cut(s) 357, 791, 875, 1287, 1354
Tru9I TTAA 5 cut(s) 357, 791, 875, 1287, 1354
TscAI CASTG 1 cut(s) 1141
TseFI GTSAC 1 cut(s) 839
TseI GCWGC 2 cut(s) 1154, 1349
Tsp45I GTSAC 1 cut(s) 839
TspDTI ATGAA 3 cut(s) 556, 996, 1250
TspGWI ACGGA 2 cut(s) 314, 1044
TspRI CASTG 1 cut(s) 1141
Tth111I GACNNNGTC 1 cut(s) 44
VpaK11BI GGWCC 3 cut(s) 304, 460, 749
XagI CCTNNNNNAGG 1 cut(s) 1098
XapI RAATTY 5 cut(s) 398, 434, 773, 1129, 1144
XceI RCATGY 3 cut(s) 584, 838, 1239
XmnI GAANNNNTTC 3 cut(s) 9, 534, 1257
XspI CTAG 2 cut(s) 284, 899
ZraI GACGTC 1 cut(s) 43
Zsp2I ATGCAT 2 cut(s) 157, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.