AT1G67390

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017910
Physical Location & Seq
Forward (+)
25244690 .. 25247343
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67390.1

Sequence Viewer

Length: 1440 bp
ATGAGTCAATTCCCTCTCTCAATTCTCAAAACCTCTCAACCTCACCATCAGCCCAAATCCATGAACGCACCACGATCATCGGATGCAAGAGGCAAACGTATCCTCATCGATCCAATCGACGACCGGATCAGTAAACTCCCCGACGATGTGTTGGTCATGATCCTAGCAAGTTTGTCCACTGAAGATGCTTTGAAGACAAGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGTGCCTTACCTCCACTTCGATTTGCTAAGTGCTACATACGAGAGTGGACTTATCGCTGCTCTTTCCAATAGTGTTGCGGAATCGATAACCCAGGTTATAAACAATCACAATGGTCATTTGATGGGTTGCTCAATCCATCATTTCGCACACCATTGTGTAAACGGTGTGCTTGAAAATTGGATTCGATTGCTTACTCTTGAGAAAAATACTAGATTTCTCTCACTTTGTAACAAACTTGGTAAAGGTAGGAGAACCAATGTGCTTCGGTTTTCCCCTAACACTTTCTCGCATCCAAAGCTCGCAACCCTCTTCCTACGTCGATACGATTTAGTAACCGCACATGCCTTCAAGGAGTGTGAAAATCTGAAGATTCTCAAGCTTGAGGGAATCTTAGCTGAAGTTGATGTGTTCAACACAGTTATTGCATCATGTCCTTCTCTCAAGGTGCTGGTGCTAAATTGCATGTGGTACAACGAAAAGACCTGCCTGAAGATTCATAATAATAATCTGAAGGTCTTGCATTTGGATTGCCCTCATGTTGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCATTTTCTACTTTGCGTTTGCTAAGGAACAAAACTTTGTCATCAAGGCACCAAGACTTTTGTTTAATAATTGGACTAAAGATCTAGAGAAAGTGCCAAACATGAACTACAATATTACATCTCATGCTCAGGAGAAAAAAAATATTGGACATGAGTTCGTGGTGAGTGGAGATGCTAGCTACTTGCAAAAGCTTAAGTCTTTGAAGGTGGTCGTGGATGTAACAAATTCGAGAGAAGTCCACATGCTAAGGGACATTTTAGTTGCTTGGAATGGAGTATTGGAAGAGCTCCATATACTATTTAAGGATAACAATGTCCCTAACTCTAAGGAAGATAGTGAATCTTCGATTGGTGGAACACAAAAGAAAAAGTGGGAGGAGGCAAATCTGTTTCCCAATGCTGATTTTCGTGTGGAAGTTATGTGGATGTTTGATTTCAACGGTTCAAATAAAAAACAATTTGCATTAGCTTCGCGTTTTGTAACGCAAGGGACGGTAATGAAGAAGATGATGATTAAAACGTCTTCATTTTTTGCAAATGAGAAGTTGGATAACGAAGCGGTTGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGAGAATCTTAGTATTGAATGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

479

Amino Acids

54.47

Weight (kDa)

8.83

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 43 - 82 1.6e-08 F-box domain
LRR_At5g56370 PF24758 136 - 293 3.4e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 728
AccB1I GGYRCC 1 cut(s) 865
AccI GTMKAC 1 cut(s) 209
AccII CGCG 1 cut(s) 1291
AciI CCGC 3 cut(s) 314, 573, 1376
AclWI GGATC 3 cut(s) 104, 134, 154
AcoI YGGCCR 1 cut(s) 1383
AcsI RAATTY 1 cut(s) 1042
AcuI CTGAAG 5 cut(s) 201, 623, 654, 746, 767
AfaI GTAC 1 cut(s) 707
AflII CTTAAG 1 cut(s) 1010
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 8 cut(s) 193, 410, 586, 649, 1021, 1255, 1263, 1430
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 1 cut(s) 327
AjuI GAANNNNNNNTTGG 4 cut(s) 1079, 1111, 1149, 1181
AleI CACNNNNGTG 1 cut(s) 390
AluBI AGCT 8 cut(s) 535, 616, 632, 800, 996, 1009, 1105, 1286
AluI AGCT 8 cut(s) 535, 616, 632, 800, 996, 1009, 1105, 1286
Alw21I GWGCWC 1 cut(s) 1107
AlwI GGATC 3 cut(s) 104, 134, 154
AoxI GGCC 1 cut(s) 1383
ApeKI GCWGC 2 cut(s) 293, 797
ApoI RAATTY 1 cut(s) 1042
AsuHPI GGTGA 2 cut(s) 35, 991
AsuNHI GCTAGC 1 cut(s) 992
BalI TGGCCA 1 cut(s) 1385
BanI GGYRCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 1107
BbsI GAAGAC 2 cut(s) 200, 1332
Bbv12I GWGCWC 1 cut(s) 1107
BbvI GCAGC 2 cut(s) 280, 809
BccI CCATC 4 cut(s) 54, 210, 352, 381
BcgI CGANNNNNNTGC 2 cut(s) 1269, 1303
BciT130I CCWGG 1 cut(s) 329
BciVI GTATCC 1 cut(s) 110
BfaI CTAG 4 cut(s) 164, 447, 902, 993
BfmI CTRYAG 1 cut(s) 795
BfrI CTTAAG 1 cut(s) 1010
BfuAI ACCTGC 1 cut(s) 728
BfuI GTATCC 1 cut(s) 110
BglII AGATCT 1 cut(s) 898
BisI GCNGC 2 cut(s) 294, 798
BlsI GCNGC 2 cut(s) 295, 799
Bme1390I CCNGG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 790
BmiI GGNNCC 1 cut(s) 867
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 5 cut(s) 73, 175, 535, 671, 979
BmtI GCTAGC 1 cut(s) 996
BpiI GAAGAC 2 cut(s) 200, 1332
Bpu10I CCTNAGC 3 cut(s) 840, 945, 1064
BpuEI CTTGAG 4 cut(s) 455, 596, 638, 662
Bsa29I ATCGAT 2 cut(s) 108, 320
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 123
BseBI CCWGG 1 cut(s) 329
BseCI ATCGAT 2 cut(s) 108, 320
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 4 cut(s) 88, 526, 1039, 1248
BseMII CTCAG 1 cut(s) 959
BseRI GAGGAG 1 cut(s) 1208
BseXI GCAGC 2 cut(s) 280, 809
Bsh1236I CGCG 1 cut(s) 1291
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 1385
BshNI GGYRCC 1 cut(s) 865
BshVI ATCGAT 2 cut(s) 108, 320
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 1107
BsiSI CCGG 1 cut(s) 124
BslFI GGGAC 3 cut(s) 1082, 1118, 1321
BsmFI GGGAC 3 cut(s) 1082, 1118, 1321
BsmI GAATGC 1 cut(s) 1436
BsnI GGCC 1 cut(s) 1385
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp143I GATC 5 cut(s) 74, 109, 126, 159, 898
BspACI CCGC 3 cut(s) 314, 573, 1376
BspANI GGCC 1 cut(s) 1385
BspCNI CTCAG 1 cut(s) 958
BspDI ATCGAT 2 cut(s) 108, 320
BspFNI CGCG 1 cut(s) 1291
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 867
BspMAI CTGCAG 1 cut(s) 799
BspMI ACCTGC 1 cut(s) 728
BspOI GCTAGC 1 cut(s) 996
BspPI GGATC 3 cut(s) 104, 134, 154
BspQI GCTCTTC 2 cut(s) 807, 1095
BspT107I GGYRCC 1 cut(s) 865
BspTI CTTAAG 1 cut(s) 1010
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 5 cut(s) 74, 109, 126, 159, 898
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 4 cut(s) 401, 655, 1259, 1312
Bst6I CTCTTC 3 cut(s) 551, 807, 1095
BstAFI CTTAAG 1 cut(s) 1010
BstC8I GCNNGC 2 cut(s) 537, 994
BstDEI CTNAG 7 cut(s) 263, 628, 840, 945, 1064, 1143, 1421
BstF5I GGATG 4 cut(s) 88, 526, 1039, 1248
BstFNI CGCG 1 cut(s) 1291
BstKTI GATC 5 cut(s) 77, 112, 129, 162, 901
BstMBI GATC 5 cut(s) 74, 109, 126, 159, 898
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 532, 1382
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 3 cut(s) 581, 703, 1063
BstSCI CCNGG 1 cut(s) 327
BstSFI CTRYAG 1 cut(s) 795
BstUI CGCG 1 cut(s) 1291
BstV1I GCAGC 2 cut(s) 280, 809
BstV2I GAAGAC 2 cut(s) 200, 1332
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
Bsu15I ATCGAT 2 cut(s) 108, 320
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 1385
BsuTUI ATCGAT 2 cut(s) 108, 320
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 4 cut(s) 88, 526, 1039, 1248
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 728
Cac8I GCNNGC 2 cut(s) 537, 994
CciI TCATGA 1 cut(s) 156
ClaI ATCGAT 2 cut(s) 108, 320
Csp6I GTAC 1 cut(s) 706
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 7 cut(s) 263, 628, 840, 945, 1064, 1143, 1421
DpnI GATC 5 cut(s) 76, 111, 128, 161, 900
DpnII GATC 5 cut(s) 74, 109, 126, 159, 898
EaeI YGGCCR 1 cut(s) 1383
Eam1104I CTCTTC 3 cut(s) 551, 807, 1095
EarI CTCTTC 3 cut(s) 551, 807, 1095
Ecl136II GAGCTC 1 cut(s) 1105
Eco24I GRGCYC 1 cut(s) 1107
Eco53kI GAGCTC 1 cut(s) 1105
Eco57I CTGAAG 5 cut(s) 201, 623, 654, 746, 767
EcoICRI GAGCTC 1 cut(s) 1105
EcoRII CCWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 1107
FaqI GGGAC 3 cut(s) 1082, 1118, 1321
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 294, 798
FokI GGATG 4 cut(s) 95, 513, 1046, 1255
FriOI GRGCYC 1 cut(s) 1107
Fsp4HI GCNGC 2 cut(s) 294, 798
FspBI CTAG 4 cut(s) 164, 447, 902, 993
GluI GCNGC 2 cut(s) 294, 798
HaeIII GGCC 1 cut(s) 1385
HapII CCGG 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 614, 1007
HinfI GANTC 8 cut(s) 4, 317, 418, 607, 624, 730, 1157, 1417
HpaII CCGG 1 cut(s) 124
HphI GGTGA 2 cut(s) 35, 991
Hpy166II GTNNAC 6 cut(s) 134, 177, 210, 284, 397, 1057
Hpy188I TCNGA 4 cut(s) 82, 603, 747, 1439
Hpy188III TCNNGA 6 cut(s) 157, 434, 806, 902, 947, 1047
Hpy8I GTNNAC 6 cut(s) 134, 177, 210, 284, 397, 1057
Hpy99I CGWCG 3 cut(s) 122, 146, 558
HpyAV CCTTC 4 cut(s) 592, 681, 742, 1015
HpyCH4III ACNGT 4 cut(s) 401, 655, 1259, 1312
HpyCH4IV ACGT 4 cut(s) 97, 553, 789, 1337
HpyCH4V TGCA 9 cut(s) 86, 662, 699, 757, 783, 797, 1003, 1280, 1352
HpyF10VI GCNNNNNNNGC 2 cut(s) 532, 1382
HpyF3I CTNAG 7 cut(s) 263, 628, 840, 945, 1064, 1143, 1421
HpySE526I ACGT 4 cut(s) 97, 553, 789, 1337
Kzo9I GATC 5 cut(s) 74, 109, 126, 159, 898
LguI GCTCTTC 2 cut(s) 807, 1095
LmnI GCTCC 1 cut(s) 1110
LpnPI CCDG 8 cut(s) 137, 314, 341, 671, 733, 737, 791, 932
Lsp1109I GCAGC 2 cut(s) 280, 809
LweI GCATC 5 cut(s) 73, 175, 535, 671, 979
MaeI CTAG 4 cut(s) 164, 447, 902, 993
MaeII ACGT 4 cut(s) 97, 553, 789, 1337
MaeIII GTNAC 4 cut(s) 464, 568, 1036, 1297
MalI GATC 5 cut(s) 76, 111, 128, 161, 900
MboI GATC 5 cut(s) 74, 109, 126, 159, 898
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 1 cut(s) 1107
MlsI TGGCCA 1 cut(s) 1385
MluCI AATT 7 cut(s) 8, 21, 412, 694, 886, 1042, 1274
MluNI TGGCCA 1 cut(s) 1385
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 1344
Mox20I TGGCCA 1 cut(s) 1385
MscI TGGCCA 1 cut(s) 1385
MseI TTAA 4 cut(s) 882, 1011, 1119, 1332
MslI CAYNNNNRTG 2 cut(s) 390, 788
Msp20I TGGCCA 1 cut(s) 1385
MspCI CTTAAG 1 cut(s) 1010
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 1436
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 1291
MwoI GCNNNNNNNGC 2 cut(s) 532, 1382
NdeII GATC 5 cut(s) 74, 109, 126, 159, 898
NheI GCTAGC 1 cut(s) 992
NlaIV GGNNCC 1 cut(s) 867
NspI RCATGY 3 cut(s) 581, 703, 1063
OliI CACNNNNGTG 1 cut(s) 390
PagI TCATGA 1 cut(s) 156
PciSI GCTCTTC 2 cut(s) 807, 1095
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 1436
PfeI GAWTC 7 cut(s) 317, 418, 607, 624, 730, 1157, 1417
PkrI GCNGC 2 cut(s) 295, 799
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PsiI TTATAA 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 1107
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 867
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
RseI CAYNNNNRTG 2 cut(s) 390, 788
SacI GAGCTC 1 cut(s) 1107
SapI GCTCTTC 2 cut(s) 807, 1095
SaqAI TTAA 4 cut(s) 882, 1011, 1119, 1332
SatI GCNGC 2 cut(s) 294, 798
Sau3AI GATC 5 cut(s) 74, 109, 126, 159, 898
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 1 cut(s) 1107
SfaNI GCATC 5 cut(s) 73, 175, 535, 671, 979
SfcI CTRYAG 1 cut(s) 795
SmiMI CAYNNNNRTG 2 cut(s) 390, 788
SmlI CTYRAG 5 cut(s) 434, 611, 617, 677, 1010
SmoI CTYRAG 5 cut(s) 434, 611, 617, 677, 1010
Sse9I AATT 7 cut(s) 8, 21, 412, 694, 886, 1042, 1274
SsiI CCGC 3 cut(s) 314, 573, 1376
SspI AATATT 2 cut(s) 931, 961
SspMI CTAG 4 cut(s) 164, 447, 902, 993
SstI GAGCTC 1 cut(s) 1107
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 4 cut(s) 401, 655, 1259, 1312
TaiI ACGT 4 cut(s) 100, 556, 792, 1340
TaqI TCGA 8 cut(s) 108, 117, 255, 320, 421, 556, 1046, 1163
TasI AATT 7 cut(s) 8, 21, 412, 694, 886, 1042, 1274
TfiI GAWTC 7 cut(s) 317, 418, 607, 624, 730, 1157, 1417
Tru1I TTAA 4 cut(s) 882, 1011, 1119, 1332
Tru9I TTAA 4 cut(s) 882, 1011, 1119, 1332
TscAI CASTG 1 cut(s) 184
TseI GCWGC 2 cut(s) 293, 797
TspDTI ATGAA 5 cut(s) 77, 722, 935, 1331, 1332
TspRI CASTG 1 cut(s) 184
Vha464I CTTAAG 1 cut(s) 1010
XapI RAATTY 1 cut(s) 1042
XbaI TCTAGA 1 cut(s) 901
XceI RCATGY 3 cut(s) 581, 703, 1063
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 4 cut(s) 164, 447, 902, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.