AT1G80960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017910
Physical Location & Seq
Forward (+)
30415123 .. 30419047
3925 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80960.6

Sequence Viewer

Length: 1461 bp
ATGGAGAGATCATCATCATCATCATCATCGTCATGTGATAAGGTTTGGAATCTTGGTTTACCTTACCCAACTTTTACATTGGCCAATGACGATAAGCCCTATCTAATTACCGTCTCTGATGATCACTCTGTTAAGGTCAAAAATGTTGATTGGATCAGCAAACTCCCTGACGATGTATTGCTCATAATATTATCGAGACTTTCCACAGAAGAAGCCATAAGGACGAGTGTTGTGTCGAAGCGATGGGAACATGTGTGGAATCAAATGTCTCATCTCGTCTTCGACATGCGGAAGAATATTATCAATTCCAACAACACGCTCGATGGTTCGAATCCAGTTGCTACATTGATTACTCAGGTTATAAACAATCATCGTGGACATCTAGAGAGCTGCGTGATCATCCATGTCCCATATCAAGGTGGAAATGGAATGCTCAATTCTTGGATTCGATTACTGAGTTGCGTGAAACGCACGAAAGTTCTCACACTTAGATACCATTATGGTACTTGGGATCGAAAGTTCAAAACTTTTAACTTTTCCCCAGACTCCTTGTCCCATCCAAGTCTTATGTCTCTCTCGCTACATTCATACTTTCTCGAAAGCTCACATCCCTTGAGAAACTGCTCGAATCTCCGGACCCTCAAACTTTTATCAATCGTCGCTCCCGAGATTGGAGTCTTTAACAGGGTACTCGCATCTTGCCCTTGTCTTGAGGTGCTTGTACTAGGCATCTGCTGCTTCAAAAAAAGTAGGGTTCCTTTGAAGATTGAGAACAAAAAATTAAAGCTCTTGCAAGTGTCTTCTCTTGAACGCATTGATGCCATTGAAGTGTCAACAACTAGTCTAGACATTCTCGCCATCATAGATATCTGCTGTCGGAGAGATGACCTTTCCCTCCAGTCCCCCCAACTCCAATTTAATAGAAACTTTTGGGTTCTAGGGCCTTACGTGCCTCACATCAGCTACAACATATCAGAGGAAAAGAGCATTGGGAATGAAGAATTTGTGAACACCATATATGGTGAGTTGTTGAGACCGTTTGCAAATTTGTATGTAGCCTTGTCGGTGAGTGTAGATTTAATGAATCCGACAGAAGTTGAGAGGTTACGACAAGTCTTAGGTTTATGGACTCGTAAAATACTGGAGCTCGAGATTATATTTAAGGATAACAATGGTCCTAGGGAAGAAAATAAGTCTTGGGATAAGAAGTTGTGGGAGGATAATAATAAGAAAGATCCGTTCCCCAATGCTAAATTCCGCGTGGATACTGTGTGGATGTATAACTTCAGCGGCTCAGAGGAAGAGTTTGCCTTGATGACGTGTTTGATTAGGCAAGGGACTGTGGTCGAGAAGATGATGATCAAGACGTCAACCTTTCCTGCAAGGAAGAGGTTAAAGATAGAAGCGGCAGTGGCCAAACTACAGGCACTTCAAACTAAGCTTACCATCAAATGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

486

Amino Acids

55.69

Weight (kDa)

8.93

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 50 7.7e-10 F-box domain
F-box-like PF12937 13 - 46 1.6e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AatII GACGTC 1 cut(s) 1370
AccII CGCG 1 cut(s) 1260
AccIII TCCGGA 1 cut(s) 633
AciI CCGC 4 cut(s) 289, 1258, 1290, 1406
AclWI GGATC 3 cut(s) 161, 519, 1229
AcoI YGGCCR 2 cut(s) 81, 1413
AcsI RAATTY 3 cut(s) 1001, 1045, 1253
AcuI CTGAAG 1 cut(s) 1270
AcyI GRCGYC 1 cut(s) 1367
AfaI GTAC 3 cut(s) 505, 690, 723
AfiI CCNNNNNNNGG 2 cut(s) 416, 671
AflIII ACRYGT 2 cut(s) 250, 1319
AgsI TTSAA 6 cut(s) 523, 742, 763, 809, 827, 1433
AhdI GACNNNNNGTC 1 cut(s) 550
AhlI ACTAGT 1 cut(s) 839
AjiI CACGTC 1 cut(s) 1320
AjuI GAANNNNNNNTTGG 4 cut(s) 972, 1004, 1238, 1270
AloI GAACNNNNNNTCC 2 cut(s) 503, 535
AluBI AGCT 6 cut(s) 390, 603, 787, 963, 1147, 1441
AluI AGCT 6 cut(s) 390, 603, 787, 963, 1147, 1441
Alw21I GWGCWC 1 cut(s) 1149
Alw26I GTCTC 5 cut(s) 118, 190, 273, 576, 1027
AlwI GGATC 3 cut(s) 161, 519, 1229
Ama87I CYCGRG 2 cut(s) 665, 1148
Aor13HI TCCGGA 1 cut(s) 633
AoxI GGCC 3 cut(s) 81, 941, 1413
ApeKI GCWGC 2 cut(s) 390, 735
ApoI RAATTY 3 cut(s) 1001, 1045, 1253
AspA2I CCTAGG 1 cut(s) 1178
AspS9I GGNCC 3 cut(s) 636, 941, 1175
AsuHPI GGTGA 2 cut(s) 1034, 1078
AsuII TTCGAA 1 cut(s) 329
AvaI CYCGRG 2 cut(s) 665, 1148
AvaII GGWCC 2 cut(s) 636, 1175
AvrII CCTAGG 1 cut(s) 1178
BalI TGGCCA 2 cut(s) 83, 1415
BanII GRGCYC 1 cut(s) 1149
BbsI GAAGAC 2 cut(s) 271, 792
Bbv12I GWGCWC 1 cut(s) 1149
BbvI GCAGC 2 cut(s) 377, 722
BccI CCATC 5 cut(s) 237, 317, 564, 866, 1454
BciVI GTATCC 1 cut(s) 1258
BclI TGATCA 3 cut(s) 121, 396, 1359
BcoDI GTCTC 5 cut(s) 118, 190, 273, 576, 1027
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 6 cut(s) 383, 725, 840, 845, 938, 1179
BfmI CTRYAG 1 cut(s) 1421
BfuI GTATCC 1 cut(s) 1258
BisI GCNGC 4 cut(s) 391, 736, 1291, 1407
BlnI CCTAGG 1 cut(s) 1178
BlsI GCNGC 4 cut(s) 392, 737, 1292, 1408
Bme18I GGWCC 2 cut(s) 636, 1175
BmeRI GACNNNNNGTC 1 cut(s) 550
BmeT110I CYCGRG 2 cut(s) 665, 1148
BmgBI CACGTC 1 cut(s) 1320
BmgT120I GGNCC 3 cut(s) 636, 941, 1175
BmiI GGNNCC 2 cut(s) 638, 756
BmsI GCATC 3 cut(s) 704, 738, 808
BoxI GACNNNNGTC 1 cut(s) 1343
BpiI GAAGAC 2 cut(s) 271, 792
BpmI CTGGAG 2 cut(s) 881, 1163
Bpu14I TTCGAA 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 634, 731
BsaAI YACGTR 1 cut(s) 949
BsaBI GATNNNNATC 2 cut(s) 13, 1358
BsaHI GRCGYC 1 cut(s) 1367
BsaI GGTCTC 1 cut(s) 1027
BsaJI CCNNGG 1 cut(s) 1178
BsaWI WCCGGW 1 cut(s) 633
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 671
Bse1I ACTGG 3 cut(s) 335, 898, 1146
Bse8I GATNNNNATC 2 cut(s) 13, 1358
BseAI TCCGGA 1 cut(s) 633
BseDI CCNNGG 1 cut(s) 1178
BseGI GGATG 4 cut(s) 399, 556, 607, 1281
BseJI GATNNNNATC 2 cut(s) 13, 1358
BseLI CCNNNNNNNGG 2 cut(s) 416, 671
BseMII CTCAG 3 cut(s) 368, 446, 1308
BseNI ACTGG 3 cut(s) 335, 898, 1146
BseXI GCAGC 2 cut(s) 377, 722
Bsh1236I CGCG 1 cut(s) 1260
BshFI GGCC 3 cut(s) 83, 943, 1415
BsiHKAI GWGCWC 1 cut(s) 1149
BsiHKCI CYCGRG 2 cut(s) 665, 1148
BsiSI CCGG 1 cut(s) 634
BslFI GGGAC 4 cut(s) 392, 538, 886, 1351
BslI CCNNNNNNNGG 2 cut(s) 416, 671
BsmAI GTCTC 5 cut(s) 118, 190, 273, 576, 1027
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 4 cut(s) 392, 538, 886, 1351
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 3 cut(s) 83, 943, 1415
Bso31I GGTCTC 1 cut(s) 1027
BsoBI CYCGRG 2 cut(s) 665, 1148
Bsp119I TTCGAA 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 1149
Bsp13I TCCGGA 1 cut(s) 633
Bsp143I GATC 7 cut(s) 8, 121, 153, 396, 511, 1234, 1359
BspACI CCGC 4 cut(s) 289, 1258, 1290, 1406
BspANI GGCC 3 cut(s) 83, 943, 1415
BspCNI CTCAG 3 cut(s) 367, 447, 1307
BspEI TCCGGA 1 cut(s) 633
BspFNI CGCG 1 cut(s) 1260
BspLI GGNNCC 2 cut(s) 638, 756
BspPI GGATC 3 cut(s) 161, 519, 1229
BspT104I TTCGAA 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 1027
BsrI ACTGG 3 cut(s) 335, 898, 1146
BssECI CCNNGG 1 cut(s) 1178
BssMI GATC 7 cut(s) 8, 121, 153, 396, 511, 1234, 1359
BssNI GRCGYC 1 cut(s) 1367
BssT1I CCWWGG 1 cut(s) 1178
Bst4CI ACNGT 4 cut(s) 112, 1038, 1270, 1342
Bst6I CTCTTC 2 cut(s) 1296, 1382
BstACI GRCGYC 1 cut(s) 1367
BstAPI GCANNNNNTGC 1 cut(s) 735
BstBAI YACGTR 1 cut(s) 949
BstBI TTCGAA 1 cut(s) 329
BstDEI CTNAG 6 cut(s) 354, 455, 488, 1117, 1294, 1437
BstF5I GGATG 4 cut(s) 399, 556, 607, 1281
BstFNI CGCG 1 cut(s) 1260
BstKTI GATC 7 cut(s) 11, 124, 156, 399, 514, 1237, 1362
BstMAI GTCTC 5 cut(s) 118, 190, 273, 576, 1027
BstMBI GATC 7 cut(s) 8, 121, 153, 396, 511, 1234, 1359
BstMWI GCNNNNNNNGC 4 cut(s) 468, 735, 949, 1412
BstNSI RCATGY 2 cut(s) 254, 289
BstPAI GACNNNNGTC 1 cut(s) 1343
BstSFI CTRYAG 1 cut(s) 1421
BstUI CGCG 1 cut(s) 1260
BstV1I GCAGC 2 cut(s) 377, 722
BstV2I GAAGAC 2 cut(s) 271, 792
BstX2I RGATCY 1 cut(s) 1234
BstYI RGATCY 1 cut(s) 1234
BsuI GTATCC 1 cut(s) 1258
BsuRI GGCC 3 cut(s) 83, 943, 1415
BtgZI GCGATG 1 cut(s) 256
BtrI CACGTC 1 cut(s) 1320
BtsCI GGATG 4 cut(s) 399, 556, 607, 1281
BtsI GCAGTG 1 cut(s) 1416
BtsIMutI CAGTG 1 cut(s) 1416
Cfr13I GGNCC 3 cut(s) 636, 941, 1175
Csp6I GTAC 3 cut(s) 504, 689, 722
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 4 cut(s) 33, 251, 286, 404
CviQI GTAC 3 cut(s) 504, 689, 722
DdeI CTNAG 6 cut(s) 354, 455, 488, 1117, 1294, 1437
DpnI GATC 7 cut(s) 10, 123, 155, 398, 513, 1236, 1361
DpnII GATC 7 cut(s) 8, 121, 153, 396, 511, 1234, 1359
DriI GACNNNNNGTC 1 cut(s) 550
EaeI YGGCCR 2 cut(s) 81, 1413
Eam1104I CTCTTC 2 cut(s) 1296, 1382
Eam1105I GACNNNNNGTC 1 cut(s) 550
EarI CTCTTC 2 cut(s) 1296, 1382
Ecl136II GAGCTC 1 cut(s) 1147
Eco130I CCWWGG 1 cut(s) 1178
Eco24I GRGCYC 1 cut(s) 1149
Eco31I GGTCTC 1 cut(s) 1027
Eco32I GATATC 1 cut(s) 868
Eco47I GGWCC 2 cut(s) 636, 1175
Eco53kI GAGCTC 1 cut(s) 1147
Eco57I CTGAAG 1 cut(s) 1270
Eco88I CYCGRG 2 cut(s) 665, 1148
EcoICRI GAGCTC 1 cut(s) 1147
EcoO109I RGGNCCY 1 cut(s) 941
EcoRV GATATC 1 cut(s) 868
EcoT14I CCWWGG 1 cut(s) 1178
EcoT38I GRGCYC 1 cut(s) 1149
ErhI CCWWGG 1 cut(s) 1178
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 4 cut(s) 36, 254, 289, 407
FaqI GGGAC 4 cut(s) 392, 538, 886, 1351
FatI CATG 4 cut(s) 32, 250, 285, 403
FbaI TGATCA 3 cut(s) 121, 396, 1359
Fnu4HI GCNGC 4 cut(s) 391, 736, 1291, 1407
FokI GGATG 4 cut(s) 386, 543, 594, 1288
FriOI GRGCYC 1 cut(s) 1149
Fsp4HI GCNGC 4 cut(s) 391, 736, 1291, 1407
FspBI CTAG 6 cut(s) 383, 725, 840, 845, 938, 1179
GluI GCNGC 4 cut(s) 391, 736, 1291, 1407
GsuI CTGGAG 2 cut(s) 881, 1163
HaeIII GGCC 3 cut(s) 83, 943, 1415
HapII CCGG 1 cut(s) 634
Hin1I GRCGYC 1 cut(s) 1367
Hin1II CATG 4 cut(s) 36, 254, 289, 407
HincII GTYRAC 2 cut(s) 834, 1371
HindII GTYRAC 2 cut(s) 834, 1371
HindIII AAGCTT 1 cut(s) 1439
HinfI GANTC 9 cut(s) 49, 259, 331, 445, 545, 628, 675, 1084, 1129
HpaII CCGG 1 cut(s) 634
HphI GGTGA 2 cut(s) 1034, 1078
Hpy166II GTNNAC 5 cut(s) 59, 377, 834, 1009, 1371
Hpy188I TCNGA 5 cut(s) 118, 879, 976, 1089, 1297
Hpy8I GTNNAC 5 cut(s) 59, 377, 834, 1009, 1371
Hpy99I CGWCG 1 cut(s) 662
HpyCH4III ACNGT 4 cut(s) 112, 1038, 1270, 1342
HpyCH4IV ACGT 3 cut(s) 948, 1319, 1367
HpyCH4V TGCA 3 cut(s) 793, 1043, 1382
HpyF10VI GCNNNNNNNGC 4 cut(s) 468, 735, 949, 1412
HpyF3I CTNAG 6 cut(s) 354, 455, 488, 1117, 1294, 1437
HpySE526I ACGT 3 cut(s) 948, 1319, 1367
Hsp92I GRCGYC 1 cut(s) 1367
Hsp92II CATG 4 cut(s) 36, 254, 289, 407
Kpn2I TCCGGA 1 cut(s) 633
Ksp22I TGATCA 3 cut(s) 121, 396, 1359
Kzo9I GATC 7 cut(s) 8, 121, 153, 396, 511, 1234, 1359
LmnI GCTCC 2 cut(s) 667, 1144
Lsp1109I GCAGC 2 cut(s) 377, 722
LweI GCATC 3 cut(s) 704, 738, 808
MaeI CTAG 6 cut(s) 383, 725, 840, 845, 938, 1179
MaeII ACGT 3 cut(s) 948, 1319, 1367
MaeIII GTNAC 1 cut(s) 1104
MalI GATC 7 cut(s) 10, 123, 155, 398, 513, 1236, 1361
MboI GATC 7 cut(s) 8, 121, 153, 396, 511, 1234, 1359
MflI RGATCY 1 cut(s) 1234
MhlI GDGCHC 1 cut(s) 1149
MlsI TGGCCA 2 cut(s) 83, 1415
MluCI AATT 8 cut(s) 105, 304, 436, 779, 914, 1001, 1045, 1253
MluNI TGGCCA 2 cut(s) 83, 1415
MlyI GAGTC 3 cut(s) 539, 684, 1123
MmeI TCCRAC 3 cut(s) 333, 857, 1112
MnlI CCTC 9 cut(s) 650, 706, 905, 963, 970, 1095, 1210, 1291, 1383
Mox20I TGGCCA 2 cut(s) 83, 1415
MroI TCCGGA 1 cut(s) 633
MscI TGGCCA 2 cut(s) 83, 1415
MseI TTAA 8 cut(s) 132, 531, 681, 782, 918, 1079, 1161, 1394
MslI CAYNNNNRTG 2 cut(s) 31, 827
Msp20I TGGCCA 2 cut(s) 83, 1415
MspA1I CMGCKG 1 cut(s) 1290
MspI CCGG 1 cut(s) 634
Mva1269I GAATGC 1 cut(s) 435
MvnI CGCG 1 cut(s) 1260
MwoI GCNNNNNNNGC 4 cut(s) 468, 735, 949, 1412
NdeII GATC 7 cut(s) 8, 121, 153, 396, 511, 1234, 1359
NlaIII CATG 4 cut(s) 36, 254, 289, 407
NlaIV GGNNCC 2 cut(s) 638, 756
NspI RCATGY 2 cut(s) 254, 289
NspV TTCGAA 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 1148
PciI ACATGT 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 6 cut(s) 49, 259, 331, 445, 628, 1084
PkrI GCNGC 4 cut(s) 392, 737, 1292, 1408
PleI GAGTC 3 cut(s) 539, 683, 1123
PpsI GAGTC 3 cut(s) 539, 683, 1123
Ppu21I YACGTR 1 cut(s) 949
PscI ACATGT 1 cut(s) 250
PshAI GACNNNNGTC 1 cut(s) 1343
PsiI TTATAA 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 1149
PspN4I GGNNCC 2 cut(s) 638, 756
PspPI GGNCC 3 cut(s) 636, 941, 1175
PsuI RGATCY 1 cut(s) 1234
RsaI GTAC 3 cut(s) 505, 690, 723
RsaNI GTAC 3 cut(s) 504, 689, 722
RseI CAYNNNNRTG 2 cut(s) 31, 827
SacI GAGCTC 1 cut(s) 1149
SaqAI TTAA 8 cut(s) 132, 531, 681, 782, 918, 1079, 1161, 1394
SatI GCNGC 4 cut(s) 391, 736, 1291, 1407
Sau3AI GATC 7 cut(s) 8, 121, 153, 396, 511, 1234, 1359
Sau96I GGNCC 3 cut(s) 636, 941, 1175
SchI GAGTC 3 cut(s) 539, 684, 1123
SduI GDGCHC 1 cut(s) 1149
SfaNI GCATC 3 cut(s) 704, 738, 808
SfcI CTRYAG 1 cut(s) 1421
Sfr274I CTCGAG 1 cut(s) 1148
SfuI TTCGAA 1 cut(s) 329
SinI GGWCC 2 cut(s) 636, 1175
SlaI CTCGAG 1 cut(s) 1148
SmiMI CAYNNNNRTG 2 cut(s) 31, 827
SmlI CTYRAG 3 cut(s) 613, 710, 1148
SmoI CTYRAG 3 cut(s) 613, 710, 1148
SpeI ACTAGT 1 cut(s) 839
Sse9I AATT 8 cut(s) 105, 304, 436, 779, 914, 1001, 1045, 1253
SsiI CCGC 4 cut(s) 289, 1258, 1290, 1406
SspI AATATT 2 cut(s) 189, 298
SspMI CTAG 6 cut(s) 383, 725, 840, 845, 938, 1179
SstI GAGCTC 1 cut(s) 1149
StyI CCWWGG 1 cut(s) 1178
TaaI ACNGT 4 cut(s) 112, 1038, 1270, 1342
TaiI ACGT 3 cut(s) 951, 1322, 1370
TasI AATT 8 cut(s) 105, 304, 436, 779, 914, 1001, 1045, 1253
TatI WGTACW 1 cut(s) 721
TauI GCSGC 2 cut(s) 1293, 1409
TfiI GAWTC 6 cut(s) 49, 259, 331, 445, 628, 1084
Tru1I TTAA 8 cut(s) 132, 531, 681, 782, 918, 1079, 1161, 1394
Tru9I TTAA 8 cut(s) 132, 531, 681, 782, 918, 1079, 1161, 1394
TscAI CASTG 1 cut(s) 1416
TseI GCWGC 2 cut(s) 390, 735
TspDTI ATGAA 3 cut(s) 576, 1011, 1097
TspGWI ACGGA 1 cut(s) 1227
TspRI CASTG 1 cut(s) 1416
VpaK11BI GGWCC 2 cut(s) 636, 1175
XapI RAATTY 3 cut(s) 1001, 1045, 1253
XbaI TCTAGA 2 cut(s) 382, 844
XceI RCATGY 2 cut(s) 254, 289
XhoI CTCGAG 1 cut(s) 1148
XmaJI CCTAGG 1 cut(s) 1178
XspI CTAG 6 cut(s) 383, 725, 840, 845, 938, 1179
ZraI GACGTC 1 cut(s) 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.